Wall clock time and date at job start Tue Mar 31 2020 11:44:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46504 * 109.47173 * 2 1 4 4 C 1.46504 * 119.99846 * 274.34856 * 3 2 1 5 5 C 1.50692 * 109.46874 * 280.38239 * 4 3 2 6 6 H 1.07994 * 120.00316 * 3.96903 * 5 4 3 7 7 C 1.37882 * 119.99770 * 183.96661 * 5 4 3 8 8 N 1.31515 * 120.00001 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 119.99883 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47170 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47113 * 120.00037 * 9 7 5 12 12 H 1.48498 * 109.46804 * 239.99651 * 9 7 5 13 13 S 1.65594 * 119.99835 * 94.34328 * 3 2 1 14 14 O 1.42100 * 106.40635 * 330.38043 * 13 3 2 15 15 O 1.42107 * 106.40458 * 197.45851 * 13 3 2 16 16 N 1.65602 * 107.21652 * 83.91909 * 13 3 2 17 17 C 1.46501 * 119.99877 * 64.58742 * 16 13 3 18 18 C 1.50695 * 109.46981 * 164.49423 * 17 16 13 19 19 C 1.38275 * 119.98684 * 270.24816 * 18 17 16 20 20 C 1.38226 * 120.05132 * 180.25515 * 19 18 17 21 21 C 1.38219 * 120.02132 * 359.49241 * 20 19 18 22 22 C 1.38436 * 119.97821 * 0.25466 * 21 20 19 23 23 F 1.35104 * 120.02632 * 179.97438 * 22 21 20 24 24 C 1.38175 * 119.99120 * 89.99569 * 18 17 16 25 25 H 1.08999 * 109.47430 * 305.08026 * 1 2 3 26 26 H 1.09004 * 109.47157 * 65.08532 * 1 2 3 27 27 H 1.09005 * 109.47152 * 185.08104 * 1 2 3 28 28 H 1.09002 * 109.46794 * 240.00442 * 2 1 3 29 29 H 1.08996 * 109.47478 * 119.99871 * 2 1 3 30 30 H 1.08995 * 109.47310 * 40.38611 * 4 3 2 31 31 H 1.09007 * 109.46602 * 160.38496 * 4 3 2 32 32 H 0.96994 * 119.99869 * 180.02562 * 8 7 5 33 33 H 0.96995 * 119.99725 * 244.58010 * 16 13 3 34 34 H 1.08995 * 109.47249 * 44.49135 * 17 16 13 35 35 H 1.08997 * 109.46763 * 284.48979 * 17 16 13 36 36 H 1.08000 * 119.97264 * 0.02829 * 19 18 17 37 37 H 1.07996 * 119.98580 * 179.77155 * 20 19 18 38 38 H 1.08002 * 120.00827 * 180.22798 * 21 20 19 39 39 H 1.08004 * 120.01001 * 0.02562 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1718 2.1039 -1.2651 5 6 3.4551 1.6813 -1.9324 6 1 4.0606 0.9020 -1.4940 7 6 3.8562 2.2897 -3.1030 8 7 3.1191 3.2391 -3.6367 9 14 5.4467 1.7654 -3.9306 10 1 6.0863 0.6867 -3.1354 11 1 5.1520 1.2651 -5.2973 12 1 6.3665 2.9281 -4.0168 13 16 2.3967 2.1256 1.4300 14 8 1.5552 1.5474 2.4184 15 8 2.4329 3.5202 1.1592 16 7 3.9450 1.6842 1.8177 17 6 5.0597 2.0922 0.9591 18 6 6.3584 1.9091 1.7012 19 6 6.8677 2.9408 2.4681 20 6 8.0615 2.7761 3.1451 21 6 8.7422 1.5758 3.0646 22 6 8.2307 0.5403 2.3014 23 9 8.8956 -0.6331 2.2216 24 6 7.0373 0.7084 1.6193 25 1 -0.3634 0.5906 0.8410 26 1 -0.3634 0.4329 -0.9321 27 1 -0.3634 -1.0237 0.0910 28 1 1.8932 -0.5138 -0.8901 29 1 1.8933 -0.5138 0.8899 30 1 1.3300 1.8752 -1.9186 31 1 2.1996 3.1760 -1.0700 32 1 3.4012 3.6668 -4.4603 33 1 4.1138 1.1556 2.6132 34 1 4.9425 3.1407 0.6852 35 1 5.0670 1.4798 0.0576 36 1 6.3341 3.8774 2.5352 37 1 8.4601 3.5839 3.7408 38 1 9.6731 1.4461 3.5966 39 1 6.6375 -0.0987 1.0232 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336909692.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:06 Heat of formation + Delta-G solvation = -123.877066 kcal Electronic energy + Delta-G solvation = -24938.968048 eV Core-core repulsion = 21114.712734 eV Total energy + Delta-G solvation = -3824.255313 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.104 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.89870 -40.20609 -38.30006 -37.66681 -36.87306 -36.24958 -34.65181 -32.08253 -31.49663 -31.40566 -28.48578 -26.81526 -24.92083 -23.68992 -23.27502 -22.60703 -20.39557 -18.94256 -18.56011 -18.46604 -17.96872 -17.35439 -17.21577 -17.09246 -16.67246 -16.53977 -16.05308 -15.41372 -15.08175 -14.80172 -14.68974 -14.54197 -14.25463 -13.80793 -13.70722 -13.62348 -13.36676 -13.32730 -13.14543 -13.01390 -12.95240 -12.72958 -12.65071 -12.60919 -12.25395 -12.09010 -11.92664 -11.67762 -11.55668 -10.56796 -10.45580 -10.03495 -9.77374 -9.67392 -8.13748 -6.26351 -0.35077 0.16935 0.23508 1.43349 1.46885 1.55903 2.01750 2.43883 2.55232 2.72449 3.18704 3.19801 3.46984 3.66648 3.82935 3.99583 4.09823 4.24868 4.32149 4.40065 4.47038 4.55564 4.57919 4.74277 4.89550 4.96704 5.01838 5.09791 5.13369 5.19460 5.32318 5.33802 5.44401 5.52976 5.57449 5.81344 5.91426 5.91695 6.14990 6.19010 6.86336 7.43548 8.94808 Molecular weight = 316.10amu Principal moments of inertia in cm(-1) A = 0.010237 B = 0.005772 C = 0.004390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2734.477389 B = 4850.179146 C = 6377.170406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.122 3.878 3 N -0.995 5.995 4 C 0.257 3.743 5 C -0.534 4.534 6 H 0.078 0.922 7 C 0.015 3.985 8 N -0.928 5.928 9 Si 0.949 3.051 10 H -0.255 1.255 11 H -0.285 1.285 12 H -0.284 1.284 13 S 2.800 3.200 14 O -1.004 7.004 15 O -1.014 7.014 16 N -1.110 6.110 17 C 0.159 3.841 18 C -0.072 4.072 19 C -0.119 4.119 20 C -0.085 4.085 21 C -0.146 4.146 22 C 0.078 3.922 23 F -0.148 7.148 24 C -0.146 4.146 25 H 0.046 0.954 26 H 0.048 0.952 27 H 0.089 0.911 28 H 0.082 0.918 29 H 0.085 0.915 30 H 0.017 0.983 31 H 0.024 0.976 32 H 0.264 0.736 33 H 0.422 0.578 34 H 0.075 0.925 35 H 0.083 0.917 36 H 0.140 0.860 37 H 0.167 0.833 38 H 0.159 0.841 39 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.694 -5.488 12.585 16.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.003 4.003 3 N -0.836 5.836 4 C 0.133 3.867 5 C -0.573 4.573 6 H 0.096 0.904 7 C -0.185 4.185 8 N -0.568 5.568 9 Si 0.775 3.225 10 H -0.179 1.179 11 H -0.211 1.211 12 H -0.210 1.210 13 S 2.808 3.192 14 O -0.988 6.988 15 O -0.998 6.998 16 N -0.872 5.872 17 C 0.034 3.966 18 C -0.074 4.074 19 C -0.138 4.138 20 C -0.102 4.102 21 C -0.165 4.165 22 C 0.059 3.941 23 F -0.127 7.127 24 C -0.166 4.166 25 H 0.065 0.935 26 H 0.067 0.933 27 H 0.108 0.892 28 H 0.100 0.900 29 H 0.103 0.897 30 H 0.035 0.965 31 H 0.042 0.958 32 H 0.073 0.927 33 H 0.257 0.743 34 H 0.093 0.907 35 H 0.101 0.899 36 H 0.157 0.843 37 H 0.184 0.816 38 H 0.177 0.823 39 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 8.074 -4.726 12.760 15.822 hybrid contribution 0.835 -0.637 -0.939 1.409 sum 8.909 -5.364 11.821 15.744 Atomic orbital electron populations 1.22196 0.96038 1.03098 1.01368 1.21239 0.94535 0.81255 1.03305 1.57618 1.79340 1.24154 1.22498 1.18779 0.96453 0.91314 0.80136 1.21842 1.07117 1.20393 1.07956 0.90417 1.25732 1.00043 0.94819 0.97896 1.70069 1.39907 1.26025 1.20767 0.85636 0.79850 0.78498 0.78551 1.17888 1.21077 1.20987 1.01161 0.73017 0.72856 0.72179 1.93539 1.65795 1.79587 1.59909 1.93534 1.87196 1.33490 1.85582 1.55670 1.23267 1.71039 1.37206 1.20230 0.82644 1.01465 0.92277 1.19686 0.95690 0.93916 0.98142 1.21493 0.96843 0.99232 0.96255 1.21360 0.93546 0.97284 0.98030 1.21488 1.02356 0.92638 1.00003 1.17868 0.92573 0.82679 1.00952 1.91480 1.80004 1.46032 1.95171 1.21167 0.94961 0.98950 1.01473 0.93502 0.93331 0.89226 0.89961 0.89704 0.96542 0.95800 0.92690 0.74317 0.90660 0.89895 0.84260 0.81565 0.82335 0.84499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.03 10.24 71.98 0.74 -4.29 16 2 C 0.12 3.94 6.01 86.38 0.52 4.45 16 3 N -0.99 -39.13 2.84 -519.85 -1.48 -40.61 16 4 C 0.26 12.48 5.46 85.63 0.47 12.95 16 5 C -0.53 -26.32 8.50 25.60 0.22 -26.10 16 6 H 0.08 3.55 6.45 -2.91 -0.02 3.53 16 7 C 0.01 0.77 5.46 84.66 0.46 1.23 16 8 N -0.93 -52.59 13.29 21.45 0.28 -52.30 16 9 Si 0.95 40.75 29.54 68.60 2.03 42.77 16 10 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 11 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 12 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 13 S 2.80 105.95 6.07 -56.49 -0.34 105.61 16 14 O -1.00 -38.74 17.10 -128.00 -2.19 -40.93 16 15 O -1.01 -46.50 16.02 -128.00 -2.05 -48.55 16 16 N -1.11 -33.31 6.04 -190.80 -1.15 -34.46 16 17 C 0.16 4.99 6.31 85.63 0.54 5.53 16 18 C -0.07 -1.87 5.28 -19.87 -0.10 -1.97 16 19 C -0.12 -2.59 9.70 22.28 0.22 -2.37 16 20 C -0.08 -1.40 10.04 22.26 0.22 -1.18 16 21 C -0.15 -2.59 10.03 22.31 0.22 -2.37 16 22 C 0.08 1.79 7.30 22.37 0.16 1.95 16 23 F -0.15 -3.60 17.27 44.97 0.78 -2.82 16 24 C -0.15 -3.62 9.68 22.31 0.22 -3.40 16 25 H 0.05 1.49 7.90 -2.39 -0.02 1.47 16 26 H 0.05 1.54 8.14 -2.38 -0.02 1.52 16 27 H 0.09 2.08 8.14 -2.38 -0.02 2.06 16 28 H 0.08 2.64 8.08 -2.39 -0.02 2.62 16 29 H 0.08 2.31 7.80 -2.39 -0.02 2.29 16 30 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.02 1.32 6.77 -2.38 -0.02 1.30 16 32 H 0.26 14.22 8.31 -92.71 -0.77 13.44 16 33 H 0.42 10.26 8.65 -96.75 -0.84 9.42 16 34 H 0.08 2.62 7.69 -2.39 -0.02 2.60 16 35 H 0.08 2.82 5.85 -2.39 -0.01 2.81 16 36 H 0.14 2.82 8.06 -2.91 -0.02 2.79 16 37 H 0.17 1.64 8.06 -2.91 -0.02 1.62 16 38 H 0.16 1.96 8.06 -2.91 -0.02 1.94 16 39 H 0.14 3.32 8.06 -2.91 -0.02 3.30 16 Total: -1.00 -65.81 347.65 -0.01 -65.82 By element: Atomic # 1 Polarization: 20.81 SS G_CDS: 0.24 Total: 21.05 kcal Atomic # 6 Polarization: -19.45 SS G_CDS: 3.88 Total: -15.57 kcal Atomic # 7 Polarization: -125.03 SS G_CDS: -2.35 Total: -127.37 kcal Atomic # 8 Polarization: -85.24 SS G_CDS: -4.24 Total: -89.48 kcal Atomic # 9 Polarization: -3.60 SS G_CDS: 0.78 Total: -2.82 kcal Atomic # 14 Polarization: 40.75 SS G_CDS: 2.03 Total: 42.77 kcal Atomic # 16 Polarization: 105.95 SS G_CDS: -0.34 Total: 105.61 kcal Total: -65.81 -0.01 -65.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336909692.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.058 kcal (2) G-P(sol) polarization free energy of solvation -65.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds