Wall clock time and date at job start Tue Mar 31 2020 11:22:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.47098 * 2 1 4 4 C 1.50708 * 109.46844 * 240.00567 * 2 1 3 5 5 H 1.08001 * 119.99682 * 239.99729 * 4 2 1 6 6 C 1.37880 * 119.99892 * 59.99695 * 4 2 1 7 7 N 1.31506 * 120.00107 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99483 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47005 * 90.00747 * 8 6 4 10 10 H 1.48503 * 109.46616 * 210.00150 * 8 6 4 11 11 H 1.48497 * 109.47270 * 329.99961 * 8 6 4 12 12 C 1.52997 * 109.47553 * 120.00894 * 2 1 3 13 13 S 1.81407 * 109.46458 * 299.99815 * 12 2 1 14 14 O 1.42101 * 110.54395 * 68.37769 * 13 12 2 15 15 O 1.42100 * 110.54289 * 291.62391 * 13 12 2 16 16 N 1.65605 * 104.44427 * 180.02562 * 13 12 2 17 17 C 1.46498 * 120.00341 * 65.00016 * 16 13 12 18 18 C 1.50703 * 109.47108 * 164.99709 * 17 16 13 19 19 N 1.31865 * 119.63513 * 269.97587 * 18 17 16 20 20 C 1.31845 * 121.75130 * 179.67786 * 19 18 17 21 21 C 1.38238 * 120.81726 * 0.64271 * 20 19 18 22 22 C 1.38588 * 119.18753 * 359.39683 * 21 20 19 23 23 C 1.38413 * 119.63374 * 90.00121 * 18 17 16 24 24 F 1.35101 * 120.44736 * 359.97438 * 23 18 17 25 25 H 1.08997 * 109.46886 * 299.98857 * 1 2 3 26 26 H 1.08998 * 109.47130 * 59.99866 * 1 2 3 27 27 H 1.09003 * 109.46436 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47102 * 179.97438 * 3 2 1 29 29 H 1.08999 * 109.46981 * 300.00546 * 3 2 1 30 30 H 1.09005 * 109.46679 * 60.00712 * 3 2 1 31 31 H 0.97003 * 120.00029 * 180.02562 * 7 6 4 32 32 H 1.08995 * 109.47157 * 179.97438 * 12 2 1 33 33 H 1.08996 * 109.47176 * 59.99561 * 12 2 1 34 34 H 0.97004 * 120.00001 * 244.99847 * 16 13 12 35 35 H 1.09002 * 109.46982 * 44.99611 * 17 16 13 36 36 H 1.08996 * 109.47044 * 284.99760 * 17 16 13 37 37 H 1.08000 * 119.59812 * 180.31887 * 20 19 18 38 38 H 1.08002 * 120.40978 * 179.67953 * 21 20 19 39 39 H 1.07999 * 120.80386 * 180.30037 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1316 6 6 1.6991 -0.2392 -2.4828 7 7 0.9435 0.8303 -2.6034 8 14 2.3224 -1.1193 -4.0081 9 1 1.3446 -2.1612 -4.4126 10 1 2.4871 -0.1398 -5.1121 11 1 3.6308 -1.7563 -3.7122 12 6 2.0402 -0.7214 1.2491 13 16 1.4355 0.1337 2.7303 14 8 0.0281 -0.0186 2.8544 15 8 2.0481 1.4098 2.8544 16 7 2.0544 -0.7404 3.9934 17 6 3.5029 -0.7967 4.2052 18 6 3.7884 -1.3246 5.5875 19 7 3.8937 -0.4837 6.5978 20 6 4.1363 -0.9003 7.8249 21 6 4.3034 -2.2455 8.0961 22 6 4.2006 -3.1614 7.0611 23 6 3.9376 -2.6868 5.7826 24 9 3.8286 -3.5432 4.7435 25 1 -0.3633 0.5136 0.8901 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3632 -1.0277 -0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6766 1.9563 -0.8899 30 1 1.6768 1.9563 0.8901 31 1 0.7088 1.1616 -3.4843 32 1 3.1301 -0.7218 1.2488 33 1 1.6768 -1.7490 1.2490 34 1 1.4578 -1.2151 4.5932 35 1 3.9240 0.2036 4.1041 36 1 3.9530 -1.4570 3.4640 37 1 4.2105 -0.1814 8.6274 38 1 4.5070 -2.5790 9.1029 39 1 4.3216 -4.2188 7.2443 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000571155319.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:11 Heat of formation + Delta-G solvation = -104.731147 kcal Electronic energy + Delta-G solvation = -24700.887700 eV Core-core repulsion = 20877.462616 eV Total energy + Delta-G solvation = -3823.425084 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.104 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -50.04271 -41.14464 -38.15827 -38.12319 -36.95781 -36.56504 -33.63005 -33.42034 -31.95254 -28.33758 -27.68189 -27.49417 -27.21268 -24.58877 -23.36066 -21.41410 -20.34293 -19.00355 -18.70642 -18.32037 -18.00925 -17.74730 -16.97971 -16.90687 -16.71080 -16.58759 -15.84387 -15.10844 -15.03310 -14.85842 -14.66242 -14.51350 -14.42314 -14.30580 -13.89613 -13.80515 -13.54096 -13.11289 -13.02208 -12.88366 -12.78729 -12.72456 -12.49906 -12.17653 -12.13655 -11.96673 -11.55853 -11.40161 -10.92747 -10.75524 -10.61919 -10.42466 -10.40168 -9.98512 -8.02157 -6.20765 -0.70769 -0.15720 0.07590 1.44915 1.46633 1.55404 1.84169 2.45020 2.61662 2.79716 2.91169 3.16110 3.20053 3.30518 3.55315 3.72172 3.96392 3.98312 4.15714 4.22921 4.38337 4.51777 4.60632 4.64956 4.70143 4.87349 4.88214 4.90785 4.99853 5.01971 5.09721 5.39467 5.51638 5.59669 5.65688 5.92849 5.98357 6.12301 6.34808 6.81441 6.83947 7.47471 8.97795 Molecular weight = 316.10amu Principal moments of inertia in cm(-1) A = 0.022485 B = 0.003560 C = 0.003273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.972821 B = 7862.749460 C = 8553.889185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.069 3.931 3 C -0.160 4.160 4 C -0.517 4.517 5 H 0.064 0.936 6 C 0.017 3.983 7 N -0.908 5.908 8 Si 0.955 3.045 9 H -0.278 1.278 10 H -0.287 1.287 11 H -0.267 1.267 12 C -0.584 4.584 13 S 2.615 3.385 14 O -0.990 6.990 15 O -0.987 6.987 16 N -1.109 6.109 17 C 0.156 3.844 18 C 0.071 3.929 19 N -0.476 5.476 20 C 0.082 3.918 21 C -0.120 4.120 22 C -0.108 4.108 23 C 0.049 3.951 24 F -0.132 7.132 25 H 0.031 0.969 26 H 0.071 0.929 27 H 0.040 0.960 28 H 0.041 0.959 29 H 0.071 0.929 30 H 0.032 0.968 31 H 0.261 0.739 32 H 0.140 0.860 33 H 0.139 0.861 34 H 0.420 0.580 35 H 0.094 0.906 36 H 0.101 0.899 37 H 0.193 0.807 38 H 0.189 0.811 39 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.678 -9.467 21.942 25.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.067 3.933 3 C -0.218 4.218 4 C -0.556 4.556 5 H 0.082 0.918 6 C -0.182 4.182 7 N -0.547 5.547 8 Si 0.781 3.219 9 H -0.204 1.204 10 H -0.213 1.213 11 H -0.191 1.191 12 C -0.717 4.717 13 S 2.713 3.287 14 O -0.980 6.980 15 O -0.976 6.976 16 N -0.868 5.868 17 C 0.030 3.970 18 C -0.068 4.068 19 N -0.185 5.185 20 C -0.076 4.076 21 C -0.140 4.140 22 C -0.134 4.134 23 C 0.027 3.973 24 F -0.110 7.110 25 H 0.050 0.950 26 H 0.090 0.910 27 H 0.059 0.941 28 H 0.061 0.939 29 H 0.090 0.910 30 H 0.051 0.949 31 H 0.071 0.929 32 H 0.158 0.842 33 H 0.157 0.843 34 H 0.254 0.746 35 H 0.113 0.887 36 H 0.119 0.881 37 H 0.210 0.790 38 H 0.207 0.793 39 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 8.080 -7.593 21.585 24.266 hybrid contribution 0.214 -1.840 -1.235 2.226 sum 8.294 -9.432 20.350 23.914 Atomic orbital electron populations 1.22215 0.97775 1.00507 1.01332 1.17940 0.92347 0.92236 0.90827 1.22207 0.99936 0.98269 1.01357 1.21299 1.31678 1.12299 0.90331 0.91766 1.25683 0.95207 0.95640 1.01687 1.69945 1.37232 1.23655 1.23839 0.85602 0.78888 0.78209 0.79183 1.20432 1.21298 1.19097 1.30454 1.12762 1.13443 1.15044 1.04758 0.73504 0.74775 0.75671 1.93510 1.31237 1.87004 1.86242 1.93509 1.78364 1.39873 1.85881 1.55386 1.14006 1.70928 1.46526 1.20231 0.80463 1.03571 0.92742 1.21093 1.01013 0.88855 0.95840 1.67557 1.11056 1.39073 1.00818 1.23533 0.94434 0.96406 0.93231 1.22609 0.96883 0.92715 1.01769 1.22118 0.97651 1.03783 0.89843 1.18807 1.04344 0.87754 0.86396 1.91537 1.93474 1.69247 1.56770 0.94972 0.90984 0.94098 0.93935 0.91040 0.94895 0.92937 0.84222 0.84270 0.74570 0.88730 0.88087 0.79014 0.79340 0.80497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -8.08 7.78 71.98 0.56 -7.52 16 2 C 0.07 3.34 0.52 -52.92 -0.03 3.31 16 3 C -0.16 -8.01 7.78 71.98 0.56 -7.45 16 4 C -0.52 -27.03 8.01 25.60 0.21 -26.82 16 5 H 0.06 3.21 7.74 -2.91 -0.02 3.19 16 6 C 0.02 0.92 5.15 84.66 0.44 1.35 16 7 N -0.91 -50.65 9.35 21.45 0.20 -50.45 16 8 Si 0.96 42.34 29.54 68.60 2.03 44.36 16 9 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 10 H -0.29 -12.68 7.11 99.48 0.71 -11.98 16 11 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 12 C -0.58 -22.29 5.01 71.98 0.36 -21.93 16 13 S 2.62 97.82 4.49 -56.49 -0.25 97.56 16 14 O -0.99 -42.20 15.70 -127.65 -2.00 -44.20 16 15 O -0.99 -42.24 15.11 -127.65 -1.93 -44.17 16 16 N -1.11 -31.44 5.88 -190.79 -1.12 -32.56 16 17 C 0.16 3.95 6.24 85.63 0.53 4.49 16 18 C 0.07 1.60 6.18 42.60 0.26 1.87 16 19 N -0.48 -10.43 10.27 -183.72 -1.89 -12.32 16 20 C 0.08 1.06 11.18 84.69 0.95 2.01 16 21 C -0.12 -0.94 10.11 22.35 0.23 -0.72 16 22 C -0.11 -1.20 10.16 22.51 0.23 -0.97 16 23 C 0.05 0.92 7.27 22.47 0.16 1.08 16 24 F -0.13 -2.73 16.49 44.97 0.74 -1.99 16 25 H 0.03 1.55 5.46 -2.39 -0.01 1.53 16 26 H 0.07 3.95 6.07 -2.39 -0.01 3.94 16 27 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 28 H 0.04 2.00 8.14 -2.39 -0.02 1.98 16 29 H 0.07 3.91 6.07 -2.39 -0.01 3.89 16 30 H 0.03 1.58 5.46 -2.38 -0.01 1.56 16 31 H 0.26 13.95 8.31 -92.71 -0.77 13.18 16 32 H 0.14 4.66 8.14 -2.39 -0.02 4.64 16 33 H 0.14 4.75 8.14 -2.39 -0.02 4.73 16 34 H 0.42 10.55 8.61 -96.74 -0.83 9.72 16 35 H 0.09 2.57 7.69 -2.39 -0.02 2.55 16 36 H 0.10 2.16 7.63 -2.39 -0.02 2.14 16 37 H 0.19 1.27 8.06 -2.91 -0.02 1.24 16 38 H 0.19 -0.12 8.06 -2.91 -0.02 -0.14 16 39 H 0.18 0.93 8.06 -2.91 -0.02 0.91 16 Total: -1.00 -72.65 333.34 0.48 -72.17 By element: Atomic # 1 Polarization: 22.65 SS G_CDS: 0.26 Total: 22.91 kcal Atomic # 6 Polarization: -55.76 SS G_CDS: 4.46 Total: -51.31 kcal Atomic # 7 Polarization: -92.52 SS G_CDS: -2.81 Total: -95.33 kcal Atomic # 8 Polarization: -84.45 SS G_CDS: -3.93 Total: -88.38 kcal Atomic # 9 Polarization: -2.73 SS G_CDS: 0.74 Total: -1.99 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.36 kcal Atomic # 16 Polarization: 97.82 SS G_CDS: -0.25 Total: 97.56 kcal Total: -72.65 0.48 -72.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571155319.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.564 kcal (2) G-P(sol) polarization free energy of solvation -72.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds