Wall clock time and date at job start Tue Mar 31 2020 11:46:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46895 * 110.99914 * 2 1 4 4 C 1.50700 * 109.47006 * 66.04705 * 3 2 1 5 5 H 1.07997 * 120.00041 * 359.97438 * 4 3 2 6 6 C 1.37879 * 120.00066 * 179.97438 * 4 3 2 7 7 N 1.31510 * 120.00127 * 179.97438 * 6 4 3 8 8 Si 1.86803 * 119.99936 * 359.97438 * 6 4 3 9 9 H 1.48501 * 109.47026 * 89.99873 * 8 6 4 10 10 H 1.48501 * 109.47378 * 210.00120 * 8 6 4 11 11 H 1.48507 * 109.47052 * 330.00092 * 8 6 4 12 12 C 1.46903 * 110.99849 * 236.04276 * 2 1 3 13 13 C 1.52999 * 109.47066 * 199.76749 * 12 2 1 14 14 H 1.09002 * 109.46873 * 302.15942 * 13 12 2 15 15 O 1.42888 * 109.47220 * 62.15927 * 13 12 2 16 16 C 1.52993 * 109.47031 * 182.16521 * 13 12 2 17 17 N 1.46503 * 109.47413 * 180.02562 * 16 13 12 18 18 C 1.39815 * 120.00184 * 179.97438 * 17 16 13 19 19 C 1.38889 * 120.04663 * 359.72356 * 18 17 16 20 20 C 1.38120 * 119.97434 * 179.79146 * 19 18 17 21 21 C 1.38446 * 120.06451 * 0.45995 * 20 19 18 22 22 F 1.35101 * 119.96049 * 179.76471 * 21 20 19 23 23 C 1.38560 * 120.08466 * 359.79359 * 21 20 19 24 24 Cl 1.73599 * 119.98592 * 179.97438 * 23 21 20 25 25 C 1.38246 * 120.02516 * 359.97427 * 23 21 20 26 26 H 1.08999 * 109.47114 * 54.96599 * 1 2 3 27 27 H 1.09008 * 109.47158 * 174.96608 * 1 2 3 28 28 H 1.08996 * 109.47159 * 294.96052 * 1 2 3 29 29 H 1.09001 * 109.46706 * 186.04444 * 3 2 1 30 30 H 1.08996 * 109.47032 * 306.04539 * 3 2 1 31 31 H 0.97003 * 119.99586 * 179.97438 * 7 6 4 32 32 H 1.08996 * 109.47314 * 319.77214 * 12 2 1 33 33 H 1.09005 * 109.46621 * 79.76803 * 12 2 1 34 34 H 0.96705 * 114.00420 * 60.00380 * 15 13 12 35 35 H 1.09000 * 109.47261 * 299.99729 * 16 13 12 36 36 H 1.09001 * 109.47672 * 59.99645 * 16 13 12 37 37 H 0.97001 * 119.99662 * 359.97438 * 17 16 13 38 38 H 1.08001 * 120.01481 * 359.97438 * 19 18 17 39 39 H 1.08007 * 119.97001 * 180.20987 * 20 19 18 40 40 H 1.07999 * 120.02657 * 180.02562 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0470 1.2985 5 1 1.0739 1.5114 2.0484 6 6 2.0276 3.3491 1.5290 7 7 1.7143 3.9389 2.6619 8 14 3.0020 4.2753 0.2320 9 1 2.0663 4.9798 -0.6809 10 1 3.8889 5.2663 0.8929 11 1 3.8256 3.3162 -0.5472 12 6 1.9955 -0.7661 -1.1376 13 6 3.4455 -1.1650 -0.8565 14 1 4.0400 -0.2695 -0.6748 15 8 3.4926 -2.0096 0.2950 16 6 4.0109 -1.9161 -2.0635 17 7 5.3993 -2.2986 -1.7942 18 6 6.1305 -3.0003 -2.7574 19 6 5.5398 -3.3403 -3.9676 20 6 6.2649 -4.0298 -4.9197 21 6 7.5770 -4.3907 -4.6653 22 9 8.2828 -5.0693 -5.5962 23 6 8.1672 -4.0575 -3.4567 24 17 9.8125 -4.5119 -3.1401 25 6 7.4463 -3.3632 -2.5030 26 1 -0.3633 0.5899 -0.8415 27 1 -0.3634 -1.0238 -0.0902 28 1 -0.3633 0.4336 0.9316 29 1 3.0797 1.3443 -0.1082 30 1 1.5611 1.9273 -0.8309 31 1 1.9896 4.8548 2.8241 32 1 1.3932 -1.6631 -1.2814 33 1 1.9552 -0.1531 -2.0381 34 1 2.9843 -2.8273 0.2042 35 1 3.4166 -2.8115 -2.2453 36 1 3.9751 -1.2717 -2.9419 37 1 5.8112 -2.0650 -0.9476 38 1 4.5149 -3.0631 -4.1652 39 1 5.8066 -4.2912 -5.8621 40 1 7.9064 -3.1031 -1.5612 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591771767.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:46:54 Heat of formation + Delta-G solvation = -65.648619 kcal Electronic energy + Delta-G solvation = -23345.426802 eV Core-core repulsion = 19521.652757 eV Total energy + Delta-G solvation = -3823.774045 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.109 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -48.98769 -39.83942 -38.33898 -36.93942 -36.01744 -34.82058 -32.51126 -31.43502 -30.64849 -28.71116 -27.96236 -25.95719 -23.91268 -23.33864 -22.11496 -21.61459 -20.14375 -18.19480 -17.57674 -17.18258 -16.80184 -16.23429 -15.95619 -15.80837 -15.26196 -14.91800 -14.67927 -14.38024 -14.16345 -13.95133 -13.87705 -13.38050 -13.20564 -13.14402 -12.96490 -12.72738 -12.35336 -11.87523 -11.67907 -11.64958 -11.48544 -11.24071 -11.21747 -10.93192 -10.74377 -10.22586 -10.18502 -9.99478 -9.84267 -9.30634 -9.25807 -8.62608 -7.70699 -7.47816 -6.09605 -4.07030 0.72813 0.96786 1.70892 3.05494 3.22501 3.23154 3.30302 3.31178 3.97118 4.30609 4.36307 4.37279 4.52576 4.69556 4.88442 4.90768 4.99265 5.07752 5.22502 5.25374 5.33331 5.39048 5.42835 5.67651 5.74237 5.74830 5.83843 5.90369 6.11464 6.15317 6.26532 6.57179 6.72924 6.86525 6.91007 7.38945 7.51565 7.73583 7.86111 7.93021 8.59746 8.99546 9.51534 11.03641 Molecular weight = 316.11amu Principal moments of inertia in cm(-1) A = 0.019366 B = 0.002485 C = 0.002357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.500020 B =11266.725074 C =11874.299109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.521 5.521 3 C 0.162 3.838 4 C -0.508 4.508 5 H 0.081 0.919 6 C 0.068 3.932 7 N -0.899 5.899 8 Si 0.875 3.125 9 H -0.278 1.278 10 H -0.285 1.285 11 H -0.269 1.269 12 C 0.025 3.975 13 C 0.103 3.897 14 H 0.107 0.893 15 O -0.537 6.537 16 C 0.089 3.911 17 N -0.729 5.729 18 C 0.228 3.772 19 C -0.171 4.171 20 C -0.089 4.089 21 C 0.037 3.963 22 F -0.136 7.136 23 C -0.020 4.020 24 Cl -0.054 7.054 25 C -0.167 4.167 26 H 0.013 0.987 27 H 0.046 0.954 28 H 0.079 0.921 29 H 0.027 0.973 30 H -0.017 1.017 31 H 0.264 0.736 32 H 0.068 0.932 33 H 0.035 0.965 34 H 0.367 0.633 35 H 0.065 0.935 36 H 0.070 0.930 37 H 0.410 0.590 38 H 0.137 0.863 39 H 0.142 0.858 40 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.565 -17.349 -15.280 24.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 N -0.245 5.245 3 C 0.036 3.964 4 C -0.546 4.546 5 H 0.099 0.901 6 C -0.134 4.134 7 N -0.538 5.538 8 Si 0.702 3.298 9 H -0.204 1.204 10 H -0.211 1.211 11 H -0.194 1.194 12 C -0.105 4.105 13 C 0.043 3.957 14 H 0.125 0.875 15 O -0.341 6.341 16 C -0.036 4.036 17 N -0.357 5.357 18 C 0.122 3.878 19 C -0.194 4.194 20 C -0.109 4.109 21 C 0.015 3.985 22 F -0.115 7.115 23 C -0.048 4.048 24 Cl -0.025 7.025 25 C -0.190 4.190 26 H 0.032 0.968 27 H 0.065 0.935 28 H 0.098 0.902 29 H 0.045 0.955 30 H 0.000 1.000 31 H 0.074 0.926 32 H 0.086 0.914 33 H 0.054 0.946 34 H 0.213 0.787 35 H 0.083 0.917 36 H 0.088 0.912 37 H 0.247 0.753 38 H 0.154 0.846 39 H 0.160 0.840 40 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 9.070 -16.909 -14.546 24.078 hybrid contribution 0.292 0.630 -1.480 1.635 sum 9.362 -16.279 -16.026 24.688 Atomic orbital electron populations 1.22239 0.87864 0.99019 1.01733 1.61859 1.07230 1.16467 1.38923 1.20253 0.95127 0.83925 0.97141 1.21001 1.35581 0.97141 1.00897 0.90097 1.24906 0.95766 0.97381 0.95308 1.69887 1.46780 1.13269 1.23861 0.86878 0.80636 0.80105 0.82159 1.20369 1.21051 1.19363 1.22666 0.95351 0.98736 0.93778 1.22124 0.96226 0.93412 0.83974 0.87488 1.86690 1.74187 1.34687 1.38507 1.22193 0.82248 0.99516 0.99675 1.44697 1.12426 1.60552 1.18074 1.17693 0.90053 0.90716 0.89342 1.20611 1.01215 1.04580 0.93012 1.20847 0.91647 0.97997 1.00375 1.17103 0.91325 1.02748 0.87321 1.91495 1.78305 1.77828 1.63888 1.20645 0.87439 1.02009 0.94701 1.98386 1.17485 1.91134 1.95526 1.20325 0.93348 1.04722 1.00616 0.96829 0.93512 0.90246 0.95506 0.99966 0.92621 0.91351 0.94648 0.78674 0.91653 0.91164 0.75317 0.84556 0.84009 0.84084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.70 9.31 60.07 0.56 1.26 16 2 N -0.52 -10.03 4.59 -244.37 -1.12 -11.16 16 3 C 0.16 3.74 3.62 -4.98 -0.02 3.72 16 4 C -0.51 -14.13 9.13 -34.44 -0.31 -14.45 16 5 H 0.08 2.47 7.34 -52.49 -0.39 2.08 16 6 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 7 N -0.90 -27.24 13.96 55.43 0.77 -26.46 16 8 Si 0.87 21.06 27.47 -169.99 -4.67 16.39 16 9 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 10 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.27 -6.15 6.54 56.52 0.37 -5.78 16 12 C 0.02 0.34 4.65 -3.82 -0.02 0.33 16 13 C 0.10 1.30 3.13 -26.74 -0.08 1.22 16 14 H 0.11 1.64 6.73 -51.93 -0.35 1.29 16 15 O -0.54 -7.28 12.98 -35.23 -0.46 -7.74 16 16 C 0.09 0.81 4.58 -4.04 -0.02 0.79 16 17 N -0.73 -6.85 5.63 -58.62 -0.33 -7.18 16 18 C 0.23 2.16 6.65 -83.75 -0.56 1.60 16 19 C -0.17 -1.46 9.31 -39.38 -0.37 -1.82 16 20 C -0.09 -0.76 10.02 -39.55 -0.40 -1.16 16 21 C 0.04 0.39 7.27 -39.39 -0.29 0.10 16 22 F -0.14 -1.54 16.83 2.25 0.04 -1.50 16 23 C -0.02 -0.20 6.32 -39.46 -0.25 -0.45 16 24 Cl -0.05 -0.55 28.61 -51.86 -1.48 -2.04 16 25 C -0.17 -1.61 9.68 -39.35 -0.38 -1.99 16 26 H 0.01 0.23 8.08 -51.93 -0.42 -0.19 16 27 H 0.05 0.67 7.85 -51.92 -0.41 0.27 16 28 H 0.08 1.59 7.01 -51.93 -0.36 1.23 16 29 H 0.03 0.63 5.66 -51.93 -0.29 0.33 16 30 H -0.02 -0.40 7.50 -51.93 -0.39 -0.79 16 31 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 32 H 0.07 0.78 7.75 -51.93 -0.40 0.38 16 33 H 0.04 0.48 8.00 -51.93 -0.42 0.07 16 34 H 0.37 3.64 9.05 45.56 0.41 4.05 16 35 H 0.07 0.49 7.94 -51.93 -0.41 0.08 16 36 H 0.07 0.61 7.96 -51.93 -0.41 0.20 16 37 H 0.41 3.98 8.36 -40.82 -0.34 3.64 16 38 H 0.14 0.94 6.73 -52.49 -0.35 0.58 16 39 H 0.14 0.90 8.06 -52.48 -0.42 0.48 16 40 H 0.14 1.21 8.06 -52.49 -0.42 0.79 16 LS Contribution 350.34 15.07 5.28 5.28 Total: -1.00 -31.41 350.34 -8.75 -40.16 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: -4.55 Total: 3.25 kcal Atomic # 6 Polarization: -6.78 SS G_CDS: -2.23 Total: -9.01 kcal Atomic # 7 Polarization: -44.12 SS G_CDS: -0.68 Total: -44.80 kcal Atomic # 8 Polarization: -7.28 SS G_CDS: -0.46 Total: -7.74 kcal Atomic # 9 Polarization: -1.54 SS G_CDS: 0.04 Total: -1.50 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -4.67 Total: 16.39 kcal Atomic # 17 Polarization: -0.55 SS G_CDS: -1.48 Total: -2.04 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.41 -8.75 -40.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591771767.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.490 kcal (2) G-P(sol) polarization free energy of solvation -31.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds