Wall clock time and date at job start Tue Mar 31 2020 11:46:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46895 * 110.99914 * 2 1 4 4 C 1.50700 * 109.47006 * 66.04705 * 3 2 1 5 5 H 1.07997 * 120.00041 * 359.97438 * 4 3 2 6 6 C 1.37879 * 120.00066 * 179.97438 * 4 3 2 7 7 N 1.31510 * 120.00127 * 179.97438 * 6 4 3 8 8 Si 1.86803 * 119.99936 * 359.97438 * 6 4 3 9 9 H 1.48501 * 109.47026 * 89.99873 * 8 6 4 10 10 H 1.48501 * 109.47378 * 210.00120 * 8 6 4 11 11 H 1.48507 * 109.47052 * 330.00092 * 8 6 4 12 12 C 1.46903 * 110.99849 * 236.04276 * 2 1 3 13 13 C 1.52999 * 109.47066 * 199.76749 * 12 2 1 14 14 H 1.09002 * 109.46873 * 302.15942 * 13 12 2 15 15 O 1.42888 * 109.47220 * 62.15927 * 13 12 2 16 16 C 1.52993 * 109.47031 * 182.16521 * 13 12 2 17 17 N 1.46503 * 109.47413 * 180.02562 * 16 13 12 18 18 C 1.39815 * 120.00184 * 179.97438 * 17 16 13 19 19 C 1.38889 * 120.04663 * 359.72356 * 18 17 16 20 20 C 1.38120 * 119.97434 * 179.79146 * 19 18 17 21 21 C 1.38446 * 120.06451 * 0.45995 * 20 19 18 22 22 F 1.35101 * 119.96049 * 179.76471 * 21 20 19 23 23 C 1.38560 * 120.08466 * 359.79359 * 21 20 19 24 24 Cl 1.73599 * 119.98592 * 179.97438 * 23 21 20 25 25 C 1.38246 * 120.02516 * 359.97427 * 23 21 20 26 26 H 1.08999 * 109.47114 * 54.96599 * 1 2 3 27 27 H 1.09008 * 109.47158 * 174.96608 * 1 2 3 28 28 H 1.08996 * 109.47159 * 294.96052 * 1 2 3 29 29 H 1.09001 * 109.46706 * 186.04444 * 3 2 1 30 30 H 1.08996 * 109.47032 * 306.04539 * 3 2 1 31 31 H 0.97003 * 119.99586 * 179.97438 * 7 6 4 32 32 H 1.08996 * 109.47314 * 319.77214 * 12 2 1 33 33 H 1.09005 * 109.46621 * 79.76803 * 12 2 1 34 34 H 0.96705 * 114.00420 * 60.00380 * 15 13 12 35 35 H 1.09000 * 109.47261 * 299.99729 * 16 13 12 36 36 H 1.09001 * 109.47672 * 59.99645 * 16 13 12 37 37 H 0.97001 * 119.99662 * 359.97438 * 17 16 13 38 38 H 1.08001 * 120.01481 * 359.97438 * 19 18 17 39 39 H 1.08007 * 119.97001 * 180.20987 * 20 19 18 40 40 H 1.07999 * 120.02657 * 180.02562 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0470 1.2985 5 1 1.0739 1.5114 2.0484 6 6 2.0276 3.3491 1.5290 7 7 1.7143 3.9389 2.6619 8 14 3.0020 4.2753 0.2320 9 1 2.0663 4.9798 -0.6809 10 1 3.8889 5.2663 0.8929 11 1 3.8256 3.3162 -0.5472 12 6 1.9955 -0.7661 -1.1376 13 6 3.4455 -1.1650 -0.8565 14 1 4.0400 -0.2695 -0.6748 15 8 3.4926 -2.0096 0.2950 16 6 4.0109 -1.9161 -2.0635 17 7 5.3993 -2.2986 -1.7942 18 6 6.1305 -3.0003 -2.7574 19 6 5.5398 -3.3403 -3.9676 20 6 6.2649 -4.0298 -4.9197 21 6 7.5770 -4.3907 -4.6653 22 9 8.2828 -5.0693 -5.5962 23 6 8.1672 -4.0575 -3.4567 24 17 9.8125 -4.5119 -3.1401 25 6 7.4463 -3.3632 -2.5030 26 1 -0.3633 0.5899 -0.8415 27 1 -0.3634 -1.0238 -0.0902 28 1 -0.3633 0.4336 0.9316 29 1 3.0797 1.3443 -0.1082 30 1 1.5611 1.9273 -0.8309 31 1 1.9896 4.8548 2.8241 32 1 1.3932 -1.6631 -1.2814 33 1 1.9552 -0.1531 -2.0381 34 1 2.9843 -2.8273 0.2042 35 1 3.4166 -2.8115 -2.2453 36 1 3.9751 -1.2717 -2.9419 37 1 5.8112 -2.0650 -0.9476 38 1 4.5149 -3.0631 -4.1652 39 1 5.8066 -4.2912 -5.8621 40 1 7.9064 -3.1031 -1.5612 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591771767.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:46:53 Heat of formation + Delta-G solvation = -89.298608 kcal Electronic energy + Delta-G solvation = -23346.452342 eV Core-core repulsion = 19521.652757 eV Total energy + Delta-G solvation = -3824.799585 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.109 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.77291 -40.55921 -39.40296 -37.76598 -37.24717 -35.65168 -34.59080 -32.16595 -31.57177 -30.13112 -29.28546 -27.00501 -25.22517 -24.32298 -23.14759 -22.41697 -21.64235 -19.06222 -18.90909 -18.31793 -17.79597 -17.22200 -16.91929 -16.64351 -16.40234 -16.22654 -15.88093 -15.47512 -15.27313 -14.91701 -14.81350 -14.51592 -14.47744 -14.11876 -14.05737 -13.76827 -13.63461 -13.21115 -13.06021 -12.62726 -12.57141 -12.51379 -12.38555 -12.15041 -11.96293 -11.82043 -11.66850 -11.44153 -10.90403 -10.82844 -10.78844 -9.95871 -8.95097 -8.40574 -8.28132 -6.31086 0.03982 0.26508 0.96745 1.32738 1.35183 1.45071 2.30901 2.33436 2.54820 3.04762 3.20066 3.27463 3.65322 3.72046 3.87102 4.03258 4.07408 4.22251 4.25879 4.40684 4.46262 4.56578 4.60372 4.67420 4.72993 4.77842 4.91903 4.98090 5.01605 5.10195 5.15438 5.17321 5.22945 5.56295 5.58400 5.98596 6.22444 6.38403 6.64389 6.68150 6.76160 7.02870 7.32325 8.88858 Molecular weight = 316.11amu Principal moments of inertia in cm(-1) A = 0.019366 B = 0.002485 C = 0.002357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.500020 B =11266.725074 C =11874.299109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 N -0.543 5.543 3 C 0.172 3.828 4 C -0.514 4.514 5 H 0.035 0.965 6 C 0.004 3.996 7 N -0.950 5.950 8 Si 0.947 3.053 9 H -0.267 1.267 10 H -0.284 1.284 11 H -0.247 1.247 12 C 0.024 3.976 13 C 0.109 3.891 14 H 0.075 0.925 15 O -0.560 6.560 16 C 0.100 3.900 17 N -0.731 5.731 18 C 0.225 3.775 19 C -0.167 4.167 20 C -0.083 4.083 21 C 0.017 3.983 22 F -0.146 7.146 23 C -0.032 4.032 24 Cl -0.061 7.061 25 C -0.174 4.174 26 H 0.018 0.982 27 H 0.085 0.915 28 H 0.040 0.960 29 H 0.028 0.972 30 H -0.014 1.014 31 H 0.266 0.734 32 H 0.103 0.897 33 H 0.047 0.953 34 H 0.383 0.617 35 H 0.091 0.909 36 H 0.082 0.918 37 H 0.407 0.593 38 H 0.160 0.840 39 H 0.166 0.834 40 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.494 -18.335 -18.132 27.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 N -0.266 5.266 3 C 0.045 3.955 4 C -0.553 4.553 5 H 0.053 0.947 6 C -0.193 4.193 7 N -0.591 5.591 8 Si 0.770 3.230 9 H -0.192 1.192 10 H -0.210 1.210 11 H -0.170 1.170 12 C -0.105 4.105 13 C 0.049 3.951 14 H 0.093 0.907 15 O -0.366 6.366 16 C -0.024 4.024 17 N -0.359 5.359 18 C 0.118 3.882 19 C -0.190 4.190 20 C -0.102 4.102 21 C -0.005 4.005 22 F -0.125 7.125 23 C -0.060 4.060 24 Cl -0.032 7.032 25 C -0.198 4.198 26 H 0.037 0.963 27 H 0.103 0.897 28 H 0.059 0.941 29 H 0.046 0.954 30 H 0.004 0.996 31 H 0.075 0.925 32 H 0.121 0.879 33 H 0.065 0.935 34 H 0.232 0.768 35 H 0.109 0.891 36 H 0.100 0.900 37 H 0.243 0.757 38 H 0.178 0.822 39 H 0.184 0.816 40 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 8.986 -17.936 -17.419 26.568 hybrid contribution 0.231 0.846 -0.504 1.012 sum 9.218 -17.090 -17.924 26.425 Atomic orbital electron populations 1.22192 0.87260 1.01177 0.99896 1.61695 1.08019 1.14490 1.42435 1.19970 0.95211 0.86040 0.94251 1.21300 1.34541 0.97365 1.02059 0.94697 1.25888 0.97096 0.98563 0.97728 1.70059 1.48738 1.13864 1.26471 0.85726 0.79252 0.78769 0.79247 1.19177 1.20963 1.17027 1.22820 0.96373 0.99312 0.92005 1.21950 0.95162 0.92885 0.85137 0.90676 1.86654 1.74772 1.35722 1.39462 1.22088 0.82101 1.00318 0.97933 1.44702 1.12625 1.60603 1.17982 1.17792 0.89919 0.90722 0.89749 1.20878 1.02130 1.03726 0.92235 1.21125 0.90751 0.97053 1.01321 1.17399 0.92226 1.03547 0.87303 1.91467 1.78674 1.78157 1.64190 1.20783 0.87354 1.02667 0.95182 1.98378 1.18039 1.91244 1.95574 1.20408 0.93766 1.04882 1.00734 0.96323 0.89650 0.94097 0.95360 0.99624 0.92528 0.87879 0.93506 0.76813 0.89056 0.89990 0.75730 0.82245 0.81640 0.83737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.47 9.31 127.69 1.19 2.65 16 2 N -0.54 -20.10 4.59 -927.05 -4.25 -24.35 16 3 C 0.17 7.83 3.62 85.56 0.31 8.14 16 4 C -0.51 -29.40 9.13 25.60 0.23 -29.16 16 5 H 0.03 2.25 7.34 -2.91 -0.02 2.23 16 6 C 0.00 0.24 5.47 84.66 0.46 0.70 16 7 N -0.95 -59.49 13.96 21.45 0.30 -59.19 16 8 Si 0.95 43.27 27.47 68.60 1.88 45.16 16 9 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 10 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 11 H -0.25 -10.30 6.54 99.48 0.65 -9.65 16 12 C 0.02 0.58 4.65 86.30 0.40 0.98 16 13 C 0.11 2.46 3.13 30.59 0.10 2.56 16 14 H 0.08 2.19 6.73 -2.39 -0.02 2.18 16 15 O -0.56 -14.04 12.98 -148.98 -1.93 -15.97 16 16 C 0.10 1.42 4.58 86.38 0.40 1.82 16 17 N -0.73 -11.73 5.63 -339.37 -1.91 -13.64 16 18 C 0.22 3.66 6.65 38.17 0.25 3.91 16 19 C -0.17 -2.23 9.31 22.40 0.21 -2.02 16 20 C -0.08 -1.18 10.02 22.29 0.22 -0.96 16 21 C 0.02 0.33 7.27 22.40 0.16 0.50 16 22 F -0.15 -3.16 16.83 44.97 0.76 -2.40 16 23 C -0.03 -0.63 6.32 22.35 0.14 -0.49 16 24 Cl -0.06 -1.23 28.61 -2.72 -0.08 -1.31 16 25 C -0.17 -3.14 9.68 22.42 0.22 -2.92 16 26 H 0.02 0.60 8.08 -2.39 -0.02 0.58 16 27 H 0.08 2.22 7.85 -2.38 -0.02 2.20 16 28 H 0.04 1.68 7.01 -2.39 -0.02 1.66 16 29 H 0.03 1.28 5.66 -2.39 -0.01 1.27 16 30 H -0.01 -0.61 7.50 -2.39 -0.02 -0.63 16 31 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 32 H 0.10 1.82 7.75 -2.39 -0.02 1.81 16 33 H 0.05 1.08 8.00 -2.38 -0.02 1.06 16 34 H 0.38 6.49 9.05 -74.05 -0.67 5.82 16 35 H 0.09 0.88 7.94 -2.39 -0.02 0.86 16 36 H 0.08 1.03 7.96 -2.39 -0.02 1.01 16 37 H 0.41 7.20 8.36 -92.71 -0.78 6.43 16 38 H 0.16 1.37 6.73 -2.91 -0.02 1.35 16 39 H 0.17 1.50 8.06 -2.91 -0.02 1.47 16 40 H 0.14 2.38 8.06 -2.91 -0.02 2.36 16 Total: -1.00 -70.99 350.34 -1.36 -72.35 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: -0.42 Total: 13.65 kcal Atomic # 6 Polarization: -18.58 SS G_CDS: 4.29 Total: -14.29 kcal Atomic # 7 Polarization: -91.32 SS G_CDS: -5.86 Total: -97.18 kcal Atomic # 8 Polarization: -14.04 SS G_CDS: -1.93 Total: -15.97 kcal Atomic # 9 Polarization: -3.16 SS G_CDS: 0.76 Total: -2.40 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 1.88 Total: 45.16 kcal Atomic # 17 Polarization: -1.23 SS G_CDS: -0.08 Total: -1.31 kcal Total: -70.99 -1.36 -72.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591771767.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.947 kcal (2) G-P(sol) polarization free energy of solvation -70.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds