Wall clock time and date at job start Tue Mar 31 2020 10:51:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86793 * 120.00168 * 2 1 4 4 H 1.48501 * 109.47463 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47115 * 300.00268 * 3 2 1 6 6 H 1.48508 * 109.47041 * 59.99844 * 3 2 1 7 7 C 1.37878 * 119.99515 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99458 * 173.70602 * 7 2 1 9 9 C 1.50690 * 120.00698 * 353.70726 * 7 2 1 10 10 C 1.53008 * 115.55216 * 86.10836 * 9 7 2 11 11 O 1.42896 * 109.46842 * 65.11525 * 10 9 7 12 12 C 1.35900 * 116.99881 * 180.02562 * 11 10 9 13 13 C 1.38792 * 120.02500 * 359.72642 * 12 11 10 14 14 C 1.38155 * 120.05034 * 179.70270 * 13 12 11 15 15 C 1.38202 * 120.10879 * 0.58826 * 14 13 12 16 16 C 1.38748 * 120.05634 * 359.68569 * 15 14 13 17 17 O 1.35895 * 120.02998 * 180.02562 * 16 15 14 18 18 C 1.42899 * 116.99906 * 359.97438 * 17 16 15 19 19 C 1.53000 * 109.47281 * 179.97438 * 18 17 16 20 20 F 1.39903 * 109.47120 * 60.00106 * 19 18 17 21 21 F 1.39896 * 109.47110 * 180.02562 * 19 18 17 22 22 F 1.39900 * 109.47252 * 300.00266 * 19 18 17 23 23 C 1.38612 * 120.02457 * 179.97438 * 12 11 10 24 24 C 1.53000 * 117.50288 * 231.78262 * 9 7 2 25 25 C 1.53007 * 117.49683 * 300.44507 * 9 7 2 26 26 H 0.96995 * 119.99952 * 0.02562 * 1 2 3 27 27 H 1.08996 * 109.47033 * 185.11119 * 10 9 7 28 28 H 1.08996 * 109.46777 * 305.11765 * 10 9 7 29 29 H 1.07993 * 119.97356 * 359.97438 * 13 12 11 30 30 H 1.07995 * 119.94417 * 180.30054 * 14 13 12 31 31 H 1.08005 * 119.96993 * 179.70428 * 15 14 13 32 32 H 1.09004 * 109.47212 * 299.99978 * 18 17 16 33 33 H 1.09003 * 109.47058 * 60.00205 * 18 17 16 34 34 H 1.07997 * 120.05612 * 0.02562 * 23 12 11 35 35 H 1.09000 * 117.50376 * 214.99902 * 24 9 7 36 36 H 1.09004 * 117.49661 * 0.02562 * 24 9 7 37 37 H 1.09000 * 117.49831 * 359.96787 * 25 9 7 38 38 H 1.09004 * 117.50014 * 144.97410 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0796 -1.1970 -0.1020 9 6 1.2579 -2.4952 0.1441 10 6 0.7193 -3.0941 -1.1568 11 8 1.8125 -3.4601 -2.0010 12 6 1.5049 -4.0107 -3.2048 13 6 0.1774 -4.1999 -3.5631 14 6 -0.1360 -4.7540 -4.7893 15 6 0.8710 -5.1323 -5.6569 16 6 2.1997 -4.9505 -5.3009 17 8 3.1895 -5.3222 -6.1546 18 6 2.7898 -5.8943 -7.4016 19 6 4.0318 -6.2465 -8.2227 20 9 4.8122 -7.1677 -7.5159 21 9 3.6404 -6.8060 -9.4437 22 9 4.7785 -5.0874 -8.4594 23 6 2.5167 -4.3886 -4.0735 24 6 1.7339 -3.4673 1.2254 25 6 0.4251 -2.6956 1.4120 26 1 -0.4850 0.8400 -0.0004 27 1 0.1233 -3.9781 -0.9303 28 1 0.0978 -2.3574 -1.6659 29 1 -0.6111 -3.9098 -2.8847 30 1 -1.1696 -4.8959 -5.0683 31 1 0.6235 -5.5696 -6.6129 32 1 2.2076 -6.7972 -7.2172 33 1 2.1821 -5.1763 -7.9525 34 1 3.5503 -4.2462 -3.7946 35 1 1.6635 -4.5335 1.0101 36 1 2.5870 -3.1656 1.8332 37 1 0.4178 -1.8865 2.1424 38 1 -0.5065 -3.2538 1.3193 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596255678.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:51:44 Heat of formation + Delta-G solvation = -191.988611 kcal Electronic energy + Delta-G solvation = -25588.145888 eV Core-core repulsion = 21174.803899 eV Total energy + Delta-G solvation = -4413.341989 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.107 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -51.19088 -48.73200 -48.67795 -41.47812 -40.22940 -38.34828 -37.04622 -34.02286 -32.39166 -31.00046 -30.03921 -28.37588 -27.25835 -24.88713 -23.73174 -23.01130 -22.64715 -21.09288 -20.14215 -19.72232 -19.15432 -18.92100 -18.26730 -17.36968 -17.01416 -16.92199 -16.77159 -16.54497 -16.28940 -15.71049 -15.55469 -15.49192 -15.10964 -15.06313 -14.84091 -14.82394 -14.64875 -14.49957 -13.73935 -13.61568 -13.50834 -13.03612 -12.98488 -12.89442 -12.63720 -12.51098 -12.35736 -12.08015 -11.88443 -11.69408 -11.42999 -10.78839 -10.48506 -10.08502 -9.54503 -9.09637 -8.15373 -6.24704 0.35634 0.43939 1.13833 1.37934 1.41226 1.52085 1.90212 2.40548 2.48559 2.68819 2.75038 2.91051 3.13968 3.30795 3.53209 3.77314 3.94123 3.96749 4.11009 4.12413 4.17666 4.26718 4.42201 4.46424 4.56123 4.65419 4.73854 4.94990 4.97952 5.15814 5.19713 5.32347 5.44237 5.52271 5.56006 5.60613 5.74673 6.17071 6.36194 6.63536 6.78932 7.43300 8.93413 Molecular weight = 316.11amu Principal moments of inertia in cm(-1) A = 0.018980 B = 0.002728 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.883948 B =10260.166313 C =10793.473903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.029 3.971 3 Si 0.946 3.054 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.276 1.276 7 C -0.507 4.507 8 H 0.044 0.956 9 C 0.004 3.996 10 C 0.122 3.878 11 O -0.320 6.320 12 C 0.153 3.847 13 C -0.254 4.254 14 C -0.032 4.032 15 C -0.240 4.240 16 C 0.163 3.837 17 O -0.318 6.318 18 C 0.009 3.991 19 C 0.466 3.534 20 F -0.185 7.185 21 F -0.167 7.167 22 F -0.186 7.186 23 C -0.211 4.211 24 C -0.186 4.186 25 C -0.140 4.140 26 H 0.262 0.738 27 H 0.054 0.946 28 H 0.045 0.955 29 H 0.128 0.872 30 H 0.164 0.836 31 H 0.171 0.829 32 H 0.141 0.859 33 H 0.138 0.862 34 H 0.124 0.876 35 H 0.091 0.909 36 H 0.078 0.922 37 H 0.067 0.933 38 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.491 -14.215 -16.901 22.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.172 4.172 3 Si 0.772 3.228 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.201 1.201 7 C -0.545 4.545 8 H 0.063 0.937 9 C 0.003 3.997 10 C 0.048 3.952 11 O -0.233 6.233 12 C 0.106 3.894 13 C -0.273 4.273 14 C -0.050 4.050 15 C -0.259 4.259 16 C 0.118 3.882 17 O -0.232 6.232 18 C -0.067 4.067 19 C 0.411 3.589 20 F -0.167 7.167 21 F -0.148 7.148 22 F -0.168 7.168 23 C -0.231 4.231 24 C -0.224 4.224 25 C -0.178 4.178 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.063 0.937 29 H 0.146 0.854 30 H 0.181 0.819 31 H 0.188 0.812 32 H 0.158 0.842 33 H 0.155 0.845 34 H 0.142 0.858 35 H 0.109 0.891 36 H 0.096 0.904 37 H 0.086 0.914 38 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -0.217 -14.037 -16.791 21.887 hybrid contribution 0.452 1.150 0.136 1.243 sum 0.235 -12.887 -16.655 21.060 Atomic orbital electron populations 1.70067 1.06709 1.27201 1.50146 1.25599 0.95671 1.01667 0.94263 0.85684 0.79118 0.80194 0.77766 1.19762 1.20669 1.20109 1.20633 0.92647 0.90353 1.50847 0.93740 1.18884 1.00424 0.94376 0.85995 1.22295 0.86441 0.96198 0.90308 1.86124 1.37157 1.74384 1.25630 1.19072 0.93586 0.91147 0.85586 1.21464 0.94606 1.09904 1.01345 1.21091 1.00847 0.92288 0.90786 1.21423 0.90086 1.10489 1.03878 1.18332 0.87390 0.94128 0.88303 1.85962 1.33322 1.76708 1.27228 1.24143 0.93240 1.04740 0.84566 1.20199 0.85300 0.74506 0.78850 1.93221 1.77503 1.67468 1.78462 1.93235 1.90760 1.85518 1.45299 1.93222 1.79224 1.49584 1.94756 1.19459 0.99281 1.10425 0.93908 1.23013 0.97813 0.96585 1.04945 1.22462 0.93516 1.00997 1.00789 0.92902 0.92835 0.93714 0.85444 0.81856 0.81188 0.84166 0.84472 0.85774 0.89089 0.90367 0.91444 0.89727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -50.42 12.88 21.45 0.28 -50.14 16 2 C 0.03 1.57 5.38 84.65 0.46 2.03 16 3 Si 0.95 43.84 29.54 68.60 2.03 45.86 16 4 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 5 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 6 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 7 C -0.51 -28.33 8.77 25.60 0.22 -28.11 16 8 H 0.04 2.57 7.82 -2.91 -0.02 2.55 16 9 C 0.00 0.18 1.62 -52.93 -0.09 0.09 16 10 C 0.12 5.50 4.56 71.98 0.33 5.83 16 11 O -0.32 -14.37 10.06 -92.42 -0.93 -15.30 16 12 C 0.15 5.69 6.68 22.49 0.15 5.84 16 13 C -0.25 -7.88 9.04 22.38 0.20 -7.67 16 14 C -0.03 -0.71 10.04 22.24 0.22 -0.49 16 15 C -0.24 -4.70 9.04 22.38 0.20 -4.50 16 16 C 0.16 4.21 6.68 22.49 0.15 4.36 16 17 O -0.32 -7.24 10.02 -92.36 -0.93 -8.16 16 18 C 0.01 0.12 4.70 71.98 0.34 0.46 16 19 C 0.47 7.39 3.32 71.98 0.24 7.63 16 20 F -0.19 -3.64 17.26 44.97 0.78 -2.87 16 21 F -0.17 -2.31 17.32 44.97 0.78 -1.53 16 22 F -0.19 -3.78 17.26 44.97 0.78 -3.01 16 23 C -0.21 -7.11 9.93 22.46 0.22 -6.88 16 24 C -0.19 -7.98 9.96 30.62 0.30 -7.67 16 25 C -0.14 -6.32 9.37 30.62 0.29 -6.03 16 26 H 0.26 13.90 8.31 -92.71 -0.77 13.13 16 27 H 0.05 2.11 7.60 -2.39 -0.02 2.09 16 28 H 0.04 2.19 7.67 -2.39 -0.02 2.17 16 29 H 0.13 3.99 6.29 -2.91 -0.02 3.97 16 30 H 0.16 2.37 8.06 -2.91 -0.02 2.35 16 31 H 0.17 1.70 6.29 -2.91 -0.02 1.68 16 32 H 0.14 0.93 7.66 -2.39 -0.02 0.92 16 33 H 0.14 1.01 7.66 -2.39 -0.02 0.99 16 34 H 0.12 4.35 8.06 -2.91 -0.02 4.33 16 35 H 0.09 3.43 8.14 -2.39 -0.02 3.41 16 36 H 0.08 3.34 8.14 -2.38 -0.02 3.33 16 37 H 0.07 3.28 8.14 -2.39 -0.02 3.26 16 38 H 0.08 3.42 8.14 -2.39 -0.02 3.40 16 Total: -1.00 -65.42 342.73 7.11 -58.31 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: 1.09 Total: 11.96 kcal Atomic # 6 Polarization: -38.37 SS G_CDS: 3.24 Total: -35.12 kcal Atomic # 7 Polarization: -50.42 SS G_CDS: 0.28 Total: -50.14 kcal Atomic # 8 Polarization: -21.61 SS G_CDS: -1.86 Total: -23.47 kcal Atomic # 9 Polarization: -9.73 SS G_CDS: 2.33 Total: -7.40 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.86 kcal Total: -65.42 7.11 -58.31 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596255678.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.681 kcal (2) G-P(sol) polarization free energy of solvation -65.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -199.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds