Wall clock time and date at job start Tue Mar 31 2020 12:00:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86807 * 119.99534 * 2 1 4 4 H 1.48497 * 109.46745 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47178 * 299.99477 * 3 2 1 6 6 H 1.48492 * 109.47100 * 59.99913 * 3 2 1 7 7 C 1.37877 * 120.00294 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99972 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99982 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.50061 * 300.06169 * 9 7 2 11 11 C 1.53041 * 109.49926 * 179.97438 * 9 7 2 12 12 C 1.53037 * 109.54128 * 178.65059 * 11 9 7 13 13 C 1.53190 * 109.31098 * 61.36256 * 12 11 9 14 14 N 1.46922 * 108.77970 * 305.36749 * 13 12 11 15 15 C 1.34781 * 120.63205 * 233.58805 * 14 13 12 16 16 O 1.21574 * 119.99914 * 183.80831 * 15 14 13 17 17 C 1.47709 * 119.99872 * 3.80609 * 15 14 13 18 18 C 1.40000 * 119.96336 * 309.10173 * 17 15 14 19 19 C 1.36599 * 120.46005 * 179.97438 * 18 17 15 20 20 C 1.38799 * 120.21071 * 0.05076 * 19 18 17 21 21 O 1.35181 * 133.65470 * 179.97438 * 20 19 18 22 22 C 1.34397 * 108.25006 * 180.02562 * 21 20 19 23 23 O 1.35177 * 124.91105 * 180.02562 * 22 21 20 24 24 N 1.30585 * 110.17752 * 0.02562 * 22 21 20 25 25 C 1.36224 * 108.68548 * 359.71776 * 24 22 21 26 26 C 1.39219 * 133.66471 * 179.47020 * 25 24 22 27 27 C 1.46929 * 118.73781 * 53.85990 * 14 13 12 28 28 H 0.96993 * 119.99961 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.45908 * 58.62904 * 11 9 7 30 30 H 1.09003 * 109.45470 * 298.67413 * 11 9 7 31 31 H 1.09007 * 109.49723 * 301.41677 * 12 11 9 32 32 H 1.08991 * 109.49768 * 181.31779 * 12 11 9 33 33 H 1.09002 * 109.58890 * 185.58083 * 13 12 11 34 34 H 1.08998 * 109.58802 * 65.15644 * 13 12 11 35 35 H 1.07996 * 119.76834 * 359.97438 * 18 17 15 36 36 H 1.07999 * 119.89600 * 180.02562 * 19 18 17 37 37 H 0.96699 * 114.00027 * 359.97324 * 23 22 21 38 38 H 1.07997 * 120.26125 * 0.79341 * 26 25 24 39 39 H 1.08998 * 109.58665 * 65.92829 * 27 14 13 40 40 H 1.08998 * 109.58574 * 186.35681 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3965 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0847 -1.1940 0.0010 9 6 1.2512 -2.4991 0.0005 10 1 0.6232 -2.5567 0.8896 11 6 2.2452 -3.6628 0.0005 12 6 1.4814 -4.9885 0.0345 13 6 0.6055 -5.1007 -1.2173 14 7 -0.2531 -3.9115 -1.3020 15 6 -1.5896 -4.0367 -1.4238 16 8 -2.2826 -3.0475 -1.5625 17 6 -2.2121 -5.3757 -1.3889 18 6 -1.7256 -6.3948 -2.2164 19 6 -2.2934 -7.6370 -2.1920 20 6 -3.3610 -7.9004 -1.3451 21 8 -4.1115 -8.9985 -1.1032 22 6 -5.0264 -8.6857 -0.1698 23 8 -5.9519 -9.5390 0.3228 24 7 -4.8922 -7.4383 0.1924 25 6 -3.8585 -6.8901 -0.5052 26 6 -3.2841 -5.6223 -0.5349 27 6 0.3733 -2.5832 -1.2574 28 1 -0.4850 0.8400 -0.0004 29 1 2.8879 -3.5914 0.8780 30 1 2.8560 -3.6185 -0.9012 31 1 0.8514 -5.0227 0.9235 32 1 2.1901 -5.8161 0.0581 33 1 -0.0143 -5.9948 -1.1507 34 1 1.2389 -5.1578 -2.1025 35 1 -0.8957 -6.1974 -2.8787 36 1 -1.9106 -8.4165 -2.8339 37 1 -5.9101 -10.4271 -0.0577 38 1 -3.6625 -4.8383 0.1043 39 1 0.9882 -2.4392 -2.1458 40 1 -0.3997 -1.8158 -1.2171 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597903437.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:00:05 Heat of formation + Delta-G solvation = -57.378342 kcal Electronic energy + Delta-G solvation = -26063.682686 eV Core-core repulsion = 22230.327327 eV Total energy + Delta-G solvation = -3833.355359 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -44.44740 -41.38889 -39.48554 -38.60369 -38.10201 -35.95602 -35.23677 -33.48588 -32.07978 -31.60220 -30.52523 -27.18792 -26.65370 -24.83999 -24.46900 -23.42389 -23.04301 -21.87020 -20.82226 -20.10330 -19.05415 -18.59501 -18.37435 -18.00021 -17.29034 -16.61077 -16.54616 -16.36950 -15.84741 -15.35507 -15.23206 -15.12296 -14.93126 -14.79653 -14.46719 -14.38358 -13.92471 -13.81312 -13.56697 -13.47629 -12.90700 -12.81153 -12.66039 -12.28678 -12.26209 -12.14285 -11.72726 -11.64147 -11.58042 -11.19046 -10.94490 -10.72096 -10.52086 -9.97529 -9.45066 -9.41608 -8.10306 -6.27137 -0.36832 -0.28639 0.78313 1.27188 1.40256 1.42177 1.54007 1.59147 1.95727 2.19071 2.42861 2.50632 3.18074 3.27213 3.41350 3.80729 3.84597 3.96294 4.08662 4.13618 4.20702 4.35926 4.54574 4.62910 4.76843 4.79916 4.82391 4.88048 4.96275 4.98636 5.10780 5.14418 5.27007 5.28984 5.33979 5.40434 5.55686 5.64449 5.81015 5.91487 6.00649 6.33567 6.59439 6.66846 6.86317 7.20811 7.43401 8.93405 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.026275 B = 0.003064 C = 0.002921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.376186 B = 9135.722148 C = 9581.821206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.008 3.992 3 Si 0.957 3.043 4 H -0.259 1.259 5 H -0.283 1.283 6 H -0.285 1.285 7 C -0.532 4.532 8 H 0.064 0.936 9 C 0.037 3.963 10 H -0.017 1.017 11 C -0.105 4.105 12 C -0.129 4.129 13 C 0.093 3.907 14 N -0.596 5.596 15 C 0.544 3.456 16 O -0.588 6.588 17 C -0.110 4.110 18 C -0.067 4.067 19 C -0.057 4.057 20 C 0.016 3.984 21 O -0.227 6.227 22 C 0.456 3.544 23 O -0.381 6.381 24 N -0.524 5.524 25 C 0.027 3.973 26 C -0.042 4.042 27 C 0.125 3.875 28 H 0.259 0.741 29 H 0.050 0.950 30 H 0.063 0.937 31 H 0.043 0.957 32 H 0.107 0.893 33 H 0.111 0.889 34 H 0.097 0.903 35 H 0.180 0.820 36 H 0.192 0.808 37 H 0.453 0.547 38 H 0.117 0.883 39 H 0.047 0.953 40 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.065 -25.709 -5.951 26.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.191 4.191 3 Si 0.783 3.217 4 H -0.183 1.183 5 H -0.208 1.208 6 H -0.211 1.211 7 C -0.571 4.571 8 H 0.082 0.918 9 C 0.018 3.982 10 H 0.001 0.999 11 C -0.143 4.143 12 C -0.167 4.167 13 C -0.028 4.028 14 N -0.327 5.327 15 C 0.332 3.668 16 O -0.469 6.469 17 C -0.115 4.115 18 C -0.086 4.086 19 C -0.075 4.075 20 C -0.034 4.034 21 O -0.124 6.124 22 C 0.206 3.794 23 O -0.187 6.187 24 N -0.272 5.272 25 C -0.084 4.084 26 C -0.062 4.062 27 C 0.003 3.997 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.082 0.918 31 H 0.062 0.938 32 H 0.126 0.874 33 H 0.129 0.871 34 H 0.115 0.885 35 H 0.197 0.803 36 H 0.209 0.791 37 H 0.316 0.684 38 H 0.135 0.865 39 H 0.065 0.935 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -4.151 -24.457 -5.233 25.352 hybrid contribution 0.126 0.878 -0.076 0.890 sum -4.024 -23.579 -5.309 24.502 Atomic orbital electron populations 1.70100 1.07479 1.27170 1.50802 1.25911 0.95523 1.02987 0.94693 0.85511 0.79357 0.79499 0.77333 1.18256 1.20849 1.21143 1.21554 0.93346 0.91399 1.50787 0.91785 1.18998 0.93137 0.93977 0.92096 0.99865 1.21521 0.97593 0.93996 1.01156 1.21932 0.99017 0.98365 0.97345 1.22381 0.93671 0.87169 0.99616 1.48456 1.05404 1.09342 1.69466 1.18753 0.82535 0.88764 0.76710 1.90795 1.63147 1.41076 1.51919 1.19630 0.97488 0.93887 1.00463 1.21161 0.99885 0.89938 0.97569 1.19913 0.91727 0.98262 0.97600 1.20338 0.97520 0.83790 1.01724 1.84476 1.39927 1.36714 1.51245 1.23019 0.84486 0.87973 0.83944 1.85223 1.44589 1.27774 1.61067 1.70831 1.21376 1.05082 1.29884 1.19375 0.95451 0.95840 0.97688 1.20047 0.93941 0.93922 0.98298 1.21858 0.97147 0.82362 0.98336 0.93207 0.93162 0.91813 0.93813 0.87432 0.87069 0.88461 0.80300 0.79107 0.68354 0.86522 0.93499 0.90804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.35 11.41 21.45 0.24 -56.11 16 2 C 0.01 0.46 5.30 84.65 0.45 0.90 16 3 Si 0.96 44.47 29.54 68.60 2.03 46.50 16 4 H -0.26 -11.29 7.11 99.48 0.71 -10.59 16 5 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 6 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 7 C -0.53 -29.16 8.56 25.60 0.22 -28.94 16 8 H 0.06 3.36 7.74 -2.91 -0.02 3.33 16 9 C 0.04 1.86 2.26 -11.32 -0.03 1.83 16 10 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 11 C -0.11 -3.92 5.10 30.62 0.16 -3.76 16 12 C -0.13 -3.65 6.08 30.67 0.19 -3.47 16 13 C 0.09 2.43 5.36 86.36 0.46 2.89 16 14 N -0.60 -23.30 2.97 -821.62 -2.44 -25.74 16 15 C 0.54 22.53 7.22 86.75 0.63 23.15 16 16 O -0.59 -31.15 16.47 -3.95 -0.07 -31.22 16 17 C -0.11 -3.40 4.99 -20.10 -0.10 -3.50 16 18 C -0.07 -1.30 7.28 22.31 0.16 -1.13 16 19 C -0.06 -0.85 9.99 22.02 0.22 -0.63 16 20 C 0.02 0.34 7.42 22.95 0.17 0.51 16 21 O -0.23 -3.90 10.78 9.99 0.11 -3.79 16 22 C 0.46 8.91 9.53 130.43 1.24 10.15 16 23 O -0.38 -4.02 13.62 -62.30 -0.85 -4.87 16 24 N -0.52 -15.25 11.38 -422.83 -4.81 -20.06 16 25 C 0.03 0.77 7.22 39.24 0.28 1.05 16 26 C -0.04 -1.38 9.79 22.75 0.22 -1.16 16 27 C 0.12 6.15 5.42 86.51 0.47 6.62 16 28 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 29 H 0.05 1.86 8.14 -2.39 -0.02 1.85 16 30 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 31 H 0.04 1.40 8.14 -2.38 -0.02 1.38 16 32 H 0.11 2.13 8.14 -2.39 -0.02 2.12 16 33 H 0.11 2.23 4.56 -2.39 -0.01 2.22 16 34 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.18 2.40 7.07 -2.91 -0.02 2.38 16 36 H 0.19 1.05 8.06 -2.91 -0.02 1.03 16 37 H 0.45 -1.95 9.06 -74.06 -0.67 -2.62 16 38 H 0.12 4.38 8.06 -2.91 -0.02 4.36 16 39 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 40 H 0.07 4.42 5.17 -2.39 -0.01 4.41 16 Total: -1.00 -85.08 334.04 -0.61 -85.69 By element: Atomic # 1 Polarization: 4.64 SS G_CDS: 0.43 Total: 5.07 kcal Atomic # 6 Polarization: -0.21 SS G_CDS: 4.75 Total: 4.54 kcal Atomic # 7 Polarization: -94.90 SS G_CDS: -7.00 Total: -101.91 kcal Atomic # 8 Polarization: -39.08 SS G_CDS: -0.81 Total: -39.88 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Total: -85.08 -0.61 -85.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597903437.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.312 kcal (2) G-P(sol) polarization free energy of solvation -85.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds