Wall clock time and date at job start Tue Mar 31 2020 12:00:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86795 * 120.00174 * 2 1 4 4 H 1.48494 * 109.47224 * 269.99727 * 3 2 1 5 5 H 1.48499 * 109.47058 * 29.99983 * 3 2 1 6 6 H 1.48500 * 109.47217 * 149.99732 * 3 2 1 7 7 C 1.37875 * 119.99728 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00395 * 175.50999 * 7 2 1 9 9 C 1.50705 * 119.99960 * 355.78386 * 7 2 1 10 10 C 1.53006 * 115.54991 * 35.32177 * 9 7 2 11 11 N 1.46498 * 109.47062 * 54.23422 * 10 9 7 12 12 C 1.34783 * 119.99756 * 185.00033 * 11 10 9 13 13 O 1.21591 * 119.99959 * 5.07170 * 12 11 10 14 14 C 1.47595 * 119.99968 * 185.08091 * 12 11 10 15 15 C 1.39725 * 120.03224 * 5.15292 * 14 12 11 16 16 C 1.37808 * 120.05723 * 179.97438 * 15 14 12 17 17 C 1.38823 * 120.02052 * 0.02562 * 16 15 14 18 18 C 1.39667 * 120.20144 * 0.03043 * 17 16 15 19 19 C 1.37976 * 120.01602 * 359.69062 * 18 17 16 20 20 O 1.36038 * 119.44028 * 179.91340 * 18 17 16 21 21 C 1.42998 * 116.67084 * 327.23007 * 20 18 17 22 22 C 1.50758 * 109.59191 * 46.35214 * 21 20 18 23 23 O 1.21279 * 120.11572 * 148.70960 * 22 21 20 24 24 N 1.35051 * 119.76809 * 328.68853 * 22 21 20 25 25 C 1.52991 * 117.50014 * 249.64705 * 9 7 2 26 26 C 1.53001 * 117.50029 * 180.98582 * 9 7 2 27 27 H 0.96993 * 119.99425 * 5.00338 * 1 2 3 28 28 H 1.08995 * 109.46812 * 174.24084 * 10 9 7 29 29 H 1.09004 * 109.46511 * 294.23383 * 10 9 7 30 30 H 0.96992 * 120.00536 * 4.99801 * 11 10 9 31 31 H 1.08001 * 119.96821 * 359.97438 * 15 14 12 32 32 H 1.08001 * 119.98850 * 179.97438 * 16 15 14 33 33 H 1.08003 * 120.11927 * 180.30117 * 19 18 17 34 34 H 1.08991 * 109.45600 * 166.38647 * 21 20 18 35 35 H 1.08997 * 109.45205 * 286.34610 * 21 20 18 36 36 H 0.97008 * 120.45867 * 181.61550 * 24 22 21 37 37 H 1.09002 * 117.50241 * 359.97438 * 25 9 7 38 38 H 1.09003 * 117.50188 * 145.02287 * 25 9 7 39 39 H 1.08997 * 117.50381 * 214.98203 * 26 9 7 40 40 H 1.09008 * 117.49708 * 359.97438 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0820 -1.1957 -0.0727 9 6 1.2540 -2.4974 0.0971 10 6 -0.0995 -2.5338 -0.6155 11 7 0.0749 -2.1392 -2.0155 12 6 -1.0009 -2.0006 -2.8156 13 8 -2.1202 -2.1123 -2.3540 14 6 -0.8202 -1.7133 -4.2520 15 6 0.4629 -1.6915 -4.8047 16 6 0.6321 -1.4238 -6.1459 17 6 -0.4723 -1.1750 -6.9493 18 6 -1.7574 -1.1942 -6.4026 19 6 -1.9330 -1.4673 -5.0616 20 8 -2.8286 -0.9465 -7.2037 21 6 -2.6262 -0.0271 -8.2801 22 6 -1.3432 -0.3628 -8.9972 23 8 -1.2360 -0.1470 -10.1858 24 7 -0.3136 -0.9043 -8.3112 25 6 1.3914 -3.2973 1.3939 26 6 2.0772 -3.7869 0.1160 27 1 -0.4849 0.8368 -0.0733 28 1 -0.5067 -3.5438 -0.5705 29 1 -0.7863 -1.8431 -0.1261 30 1 0.9644 -1.9777 -2.3667 31 1 1.3227 -1.8845 -4.1803 32 1 1.6244 -1.4068 -6.5720 33 1 -2.9263 -1.4874 -4.6381 34 1 -3.4606 -0.0957 -8.9779 35 1 -2.5659 0.9869 -7.8849 36 1 0.5245 -1.1026 -8.7576 37 1 2.0250 -2.8812 2.1773 38 1 0.5176 -3.8499 1.7395 39 1 1.6544 -4.6613 -0.3787 40 1 3.1616 -3.6927 0.0583 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619541995.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:00:53 Heat of formation + Delta-G solvation = -45.889230 kcal Electronic energy + Delta-G solvation = -25846.585310 eV Core-core repulsion = 22013.728156 eV Total energy + Delta-G solvation = -3832.857153 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.66127 -39.49929 -38.60314 -37.40596 -36.64847 -35.23092 -33.18532 -32.23437 -30.81675 -30.16685 -28.12458 -26.13377 -25.41605 -24.02957 -23.02994 -21.32572 -20.79011 -19.70171 -19.34458 -18.81661 -18.06700 -17.39926 -16.84073 -16.36772 -15.80005 -15.44452 -15.13421 -14.89758 -14.76134 -14.37978 -14.23135 -14.04110 -13.95334 -13.36069 -13.31049 -12.94674 -12.56504 -12.54727 -11.84242 -11.62047 -11.51717 -11.39484 -11.12100 -10.90690 -10.74431 -10.56073 -10.38325 -10.28944 -9.80006 -9.23612 -9.00790 -8.89820 -8.85869 -8.34787 -8.19968 -7.85956 -6.03855 -4.24809 0.62786 1.14055 1.91498 2.44112 2.97732 3.16705 3.19060 3.27783 3.29181 3.67508 4.00992 4.13095 4.25492 4.39230 4.61859 4.80698 4.86173 4.91418 5.03850 5.22530 5.37518 5.43964 5.63517 5.78243 5.96882 6.01251 6.18889 6.25083 6.29321 6.39499 6.48352 6.51364 6.56375 6.66008 6.85192 7.04322 7.05300 7.21082 7.42325 7.51460 7.58715 7.92895 8.25343 8.48647 8.76991 9.08713 9.39227 10.84860 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.017440 B = 0.003455 C = 0.003245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.140922 B = 8102.760177 C = 8627.060627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.075 3.925 3 Si 0.892 3.108 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.500 4.500 8 H 0.061 0.939 9 C 0.036 3.964 10 C 0.163 3.837 11 N -0.672 5.672 12 C 0.547 3.453 13 O -0.552 6.552 14 C -0.104 4.104 15 C -0.075 4.075 16 C -0.129 4.129 17 C 0.102 3.898 18 C 0.065 3.935 19 C -0.051 4.051 20 O -0.299 6.299 21 C 0.050 3.950 22 C 0.492 3.508 23 O -0.516 6.516 24 N -0.656 5.656 25 C -0.198 4.198 26 C -0.213 4.213 27 H 0.264 0.736 28 H 0.020 0.980 29 H 0.120 0.880 30 H 0.397 0.603 31 H 0.142 0.858 32 H 0.138 0.862 33 H 0.153 0.847 34 H 0.146 0.854 35 H 0.101 0.899 36 H 0.416 0.584 37 H 0.079 0.921 38 H 0.067 0.933 39 H 0.068 0.932 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.513 -1.452 -13.402 13.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.129 4.129 3 Si 0.720 3.280 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.537 4.537 8 H 0.079 0.921 9 C 0.035 3.965 10 C 0.041 3.959 11 N -0.318 5.318 12 C 0.332 3.668 13 O -0.433 6.433 14 C -0.109 4.109 15 C -0.094 4.094 16 C -0.149 4.149 17 C 0.006 3.994 18 C 0.019 3.981 19 C -0.071 4.071 20 O -0.214 6.214 21 C -0.029 4.029 22 C 0.279 3.721 23 O -0.391 6.391 24 N -0.303 5.303 25 C -0.237 4.237 26 C -0.250 4.250 27 H 0.074 0.926 28 H 0.038 0.962 29 H 0.137 0.863 30 H 0.232 0.768 31 H 0.160 0.840 32 H 0.156 0.844 33 H 0.170 0.830 34 H 0.163 0.837 35 H 0.119 0.881 36 H 0.255 0.745 37 H 0.098 0.902 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -1.775 -1.307 -13.588 13.765 hybrid contribution 1.671 0.999 -0.403 1.988 sum -0.104 -0.308 -13.990 13.994 Atomic orbital electron populations 1.69849 1.05639 1.26819 1.47716 1.24996 0.94833 0.99041 0.94071 0.86582 0.79895 0.83353 0.78181 1.20637 1.21082 1.19846 1.20494 0.92731 0.88534 1.51944 0.92106 1.19237 0.92830 0.89917 0.94516 1.21133 0.98336 0.96789 0.79691 1.45535 1.08162 1.66265 1.11826 1.17822 0.85425 0.78578 0.84958 1.90727 1.24160 1.52461 1.75908 1.20105 0.92857 1.02865 0.95031 1.21281 0.97055 0.96816 0.94265 1.20538 0.97005 1.03913 0.93474 1.18148 0.94153 1.03501 0.83568 1.18377 0.84033 1.04809 0.90880 1.20586 1.00691 0.97359 0.88501 1.86296 1.33374 1.61288 1.40419 1.23189 0.96103 0.94811 0.88747 1.21612 0.86092 0.76706 0.87700 1.90805 1.82341 1.51518 1.14415 1.43634 1.17402 1.61085 1.08192 1.22942 1.01704 1.06539 0.92511 1.22966 0.98430 0.99994 1.03619 0.92571 0.96164 0.86280 0.76814 0.84039 0.84433 0.82982 0.83676 0.88140 0.74469 0.90214 0.91420 0.91309 0.90621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -22.23 10.11 55.43 0.56 -21.67 16 2 C 0.08 1.85 5.31 -17.82 -0.09 1.76 16 3 Si 0.89 19.44 29.54 -169.99 -5.02 14.42 16 4 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 5 H -0.29 -6.37 7.11 56.52 0.40 -5.96 16 6 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 7 C -0.50 -12.08 8.44 -34.44 -0.29 -12.37 16 8 H 0.06 1.47 7.82 -52.49 -0.41 1.06 16 9 C 0.04 0.80 2.04 -155.66 -0.32 0.48 16 10 C 0.16 3.66 4.62 -4.04 -0.02 3.64 16 11 N -0.67 -13.44 4.96 -61.33 -0.30 -13.75 16 12 C 0.55 10.83 7.75 -12.44 -0.10 10.74 16 13 O -0.55 -12.79 16.33 5.29 0.09 -12.71 16 14 C -0.10 -1.64 5.88 -104.94 -0.62 -2.25 16 15 C -0.07 -0.95 9.50 -39.18 -0.37 -1.32 16 16 C -0.13 -1.35 9.92 -39.52 -0.39 -1.74 16 17 C 0.10 1.15 6.55 -83.50 -0.55 0.60 16 18 C 0.07 0.83 6.43 -39.14 -0.25 0.58 16 19 C -0.05 -0.75 9.53 -39.09 -0.37 -1.12 16 20 O -0.30 -3.52 10.45 -19.86 -0.21 -3.73 16 21 C 0.05 0.44 7.17 36.03 0.26 0.70 16 22 C 0.49 5.36 7.94 -10.83 -0.09 5.27 16 23 O -0.52 -6.97 17.95 5.56 0.10 -6.87 16 24 N -0.66 -6.50 5.45 -9.65 -0.05 -6.55 16 25 C -0.20 -4.14 9.96 -26.70 -0.27 -4.41 16 26 C -0.21 -4.16 9.92 -26.69 -0.26 -4.43 16 27 H 0.26 6.71 8.32 -40.82 -0.34 6.37 16 28 H 0.02 0.44 8.09 -51.93 -0.42 0.02 16 29 H 0.12 3.10 5.89 -51.93 -0.31 2.79 16 30 H 0.40 7.32 6.19 -40.82 -0.25 7.07 16 31 H 0.14 1.64 6.46 -52.49 -0.34 1.30 16 32 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 33 H 0.15 2.30 7.65 -52.48 -0.40 1.89 16 34 H 0.15 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.42 3.26 8.88 -40.82 -0.36 2.90 16 37 H 0.08 1.67 8.14 -51.93 -0.42 1.25 16 38 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 39 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 40 H 0.08 1.44 8.14 -51.92 -0.42 1.02 16 LS Contribution 343.27 15.07 5.17 5.17 Total: -1.00 -29.87 343.27 -7.98 -37.85 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: -4.59 Total: 11.70 kcal Atomic # 6 Polarization: -0.14 SS G_CDS: -3.73 Total: -3.86 kcal Atomic # 7 Polarization: -42.18 SS G_CDS: 0.20 Total: -41.97 kcal Atomic # 8 Polarization: -23.28 SS G_CDS: -0.02 Total: -23.30 kcal Atomic # 14 Polarization: 19.44 SS G_CDS: -5.02 Total: 14.42 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -29.87 -7.98 -37.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619541995.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.041 kcal (2) G-P(sol) polarization free energy of solvation -29.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds