Wall clock time and date at job start Tue Mar 31 2020 12:00:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86795 * 120.00174 * 2 1 4 4 H 1.48494 * 109.47224 * 269.99727 * 3 2 1 5 5 H 1.48499 * 109.47058 * 29.99983 * 3 2 1 6 6 H 1.48500 * 109.47217 * 149.99732 * 3 2 1 7 7 C 1.37875 * 119.99728 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00395 * 175.50999 * 7 2 1 9 9 C 1.50705 * 119.99960 * 355.78386 * 7 2 1 10 10 C 1.53006 * 115.54991 * 35.32177 * 9 7 2 11 11 N 1.46498 * 109.47062 * 54.23422 * 10 9 7 12 12 C 1.34783 * 119.99756 * 185.00033 * 11 10 9 13 13 O 1.21591 * 119.99959 * 5.07170 * 12 11 10 14 14 C 1.47595 * 119.99968 * 185.08091 * 12 11 10 15 15 C 1.39725 * 120.03224 * 5.15292 * 14 12 11 16 16 C 1.37808 * 120.05723 * 179.97438 * 15 14 12 17 17 C 1.38823 * 120.02052 * 0.02562 * 16 15 14 18 18 C 1.39667 * 120.20144 * 0.03043 * 17 16 15 19 19 C 1.37976 * 120.01602 * 359.69062 * 18 17 16 20 20 O 1.36038 * 119.44028 * 179.91340 * 18 17 16 21 21 C 1.42998 * 116.67084 * 327.23007 * 20 18 17 22 22 C 1.50758 * 109.59191 * 46.35214 * 21 20 18 23 23 O 1.21279 * 120.11572 * 148.70960 * 22 21 20 24 24 N 1.35051 * 119.76809 * 328.68853 * 22 21 20 25 25 C 1.52991 * 117.50014 * 249.64705 * 9 7 2 26 26 C 1.53001 * 117.50029 * 180.98582 * 9 7 2 27 27 H 0.96993 * 119.99425 * 5.00338 * 1 2 3 28 28 H 1.08995 * 109.46812 * 174.24084 * 10 9 7 29 29 H 1.09004 * 109.46511 * 294.23383 * 10 9 7 30 30 H 0.96992 * 120.00536 * 4.99801 * 11 10 9 31 31 H 1.08001 * 119.96821 * 359.97438 * 15 14 12 32 32 H 1.08001 * 119.98850 * 179.97438 * 16 15 14 33 33 H 1.08003 * 120.11927 * 180.30117 * 19 18 17 34 34 H 1.08991 * 109.45600 * 166.38647 * 21 20 18 35 35 H 1.08997 * 109.45205 * 286.34610 * 21 20 18 36 36 H 0.97008 * 120.45867 * 181.61550 * 24 22 21 37 37 H 1.09002 * 117.50241 * 359.97438 * 25 9 7 38 38 H 1.09003 * 117.50188 * 145.02287 * 25 9 7 39 39 H 1.08997 * 117.50381 * 214.98203 * 26 9 7 40 40 H 1.09008 * 117.49708 * 359.97438 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0820 -1.1957 -0.0727 9 6 1.2540 -2.4974 0.0971 10 6 -0.0995 -2.5338 -0.6155 11 7 0.0749 -2.1392 -2.0155 12 6 -1.0009 -2.0006 -2.8156 13 8 -2.1202 -2.1123 -2.3540 14 6 -0.8202 -1.7133 -4.2520 15 6 0.4629 -1.6915 -4.8047 16 6 0.6321 -1.4238 -6.1459 17 6 -0.4723 -1.1750 -6.9493 18 6 -1.7574 -1.1942 -6.4026 19 6 -1.9330 -1.4673 -5.0616 20 8 -2.8286 -0.9465 -7.2037 21 6 -2.6262 -0.0271 -8.2801 22 6 -1.3432 -0.3628 -8.9972 23 8 -1.2360 -0.1470 -10.1858 24 7 -0.3136 -0.9043 -8.3112 25 6 1.3914 -3.2973 1.3939 26 6 2.0772 -3.7869 0.1160 27 1 -0.4849 0.8368 -0.0733 28 1 -0.5067 -3.5438 -0.5705 29 1 -0.7863 -1.8431 -0.1261 30 1 0.9644 -1.9777 -2.3667 31 1 1.3227 -1.8845 -4.1803 32 1 1.6244 -1.4068 -6.5720 33 1 -2.9263 -1.4874 -4.6381 34 1 -3.4606 -0.0957 -8.9779 35 1 -2.5659 0.9869 -7.8849 36 1 0.5245 -1.1026 -8.7576 37 1 2.0250 -2.8812 2.1773 38 1 0.5176 -3.8499 1.7395 39 1 1.6544 -4.6613 -0.3787 40 1 3.1616 -3.6927 0.0583 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619541995.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:00:52 Heat of formation + Delta-G solvation = -65.881927 kcal Electronic energy + Delta-G solvation = -25847.452258 eV Core-core repulsion = 22013.728156 eV Total energy + Delta-G solvation = -3833.724102 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.57162 -40.79515 -39.74323 -38.60136 -38.14915 -36.22918 -34.80560 -34.08712 -31.79106 -31.22365 -29.02636 -27.78823 -27.13631 -25.07419 -24.12278 -22.93364 -21.97348 -21.09177 -20.70811 -19.98284 -18.99464 -18.67139 -18.01497 -17.61069 -17.01148 -16.72000 -16.56546 -16.30810 -15.85335 -15.75840 -15.49422 -15.35696 -14.97099 -14.75020 -14.53184 -14.20303 -13.95454 -13.59731 -13.52895 -13.30816 -12.86500 -12.57345 -12.55290 -12.33117 -12.25943 -12.00125 -11.89620 -11.52468 -11.28206 -10.93086 -10.76214 -10.60772 -10.11859 -9.85193 -9.63809 -9.08432 -7.89409 -6.16011 -0.42335 0.16248 1.01319 1.43730 1.50147 1.56731 1.61758 1.96247 2.08780 2.44343 2.61615 2.80260 2.86011 3.12215 3.48063 3.67747 3.88346 3.98339 4.01396 4.11290 4.16395 4.30573 4.36948 4.58908 4.64402 4.79503 4.83787 4.86041 5.00251 5.01269 5.18091 5.24576 5.31839 5.35641 5.43951 5.57731 5.64526 5.65406 5.91669 6.04625 6.13341 6.41564 6.61538 6.82175 7.00180 7.49693 7.55119 8.95752 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.017440 B = 0.003455 C = 0.003245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.140922 B = 8102.760177 C = 8627.060627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.038 3.962 3 Si 0.945 3.055 4 H -0.271 1.271 5 H -0.296 1.296 6 H -0.271 1.271 7 C -0.503 4.503 8 H 0.060 0.940 9 C 0.008 3.992 10 C 0.174 3.826 11 N -0.668 5.668 12 C 0.543 3.457 13 O -0.598 6.598 14 C -0.127 4.127 15 C -0.070 4.070 16 C -0.112 4.112 17 C 0.115 3.885 18 C 0.063 3.937 19 C -0.063 4.063 20 O -0.310 6.310 21 C 0.046 3.954 22 C 0.493 3.507 23 O -0.542 6.542 24 N -0.647 5.647 25 C -0.203 4.203 26 C -0.184 4.184 27 H 0.255 0.745 28 H 0.019 0.981 29 H 0.081 0.919 30 H 0.405 0.595 31 H 0.154 0.846 32 H 0.179 0.821 33 H 0.135 0.865 34 H 0.171 0.829 35 H 0.121 0.879 36 H 0.428 0.572 37 H 0.076 0.924 38 H 0.074 0.926 39 H 0.086 0.914 40 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.495 -1.405 -15.396 15.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.164 4.164 3 Si 0.772 3.228 4 H -0.197 1.197 5 H -0.223 1.223 6 H -0.196 1.196 7 C -0.541 4.541 8 H 0.079 0.921 9 C 0.008 3.992 10 C 0.050 3.950 11 N -0.314 5.314 12 C 0.331 3.669 13 O -0.481 6.481 14 C -0.131 4.131 15 C -0.089 4.089 16 C -0.132 4.132 17 C 0.018 3.982 18 C 0.017 3.983 19 C -0.084 4.084 20 O -0.225 6.225 21 C -0.031 4.031 22 C 0.281 3.719 23 O -0.419 6.419 24 N -0.295 5.295 25 C -0.242 4.242 26 C -0.221 4.221 27 H 0.065 0.935 28 H 0.037 0.963 29 H 0.098 0.902 30 H 0.241 0.759 31 H 0.171 0.829 32 H 0.196 0.804 33 H 0.153 0.847 34 H 0.188 0.812 35 H 0.139 0.861 36 H 0.269 0.731 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.104 0.896 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 0.283 -1.270 -15.601 15.655 hybrid contribution 1.038 0.963 0.158 1.424 sum 1.321 -0.308 -15.443 15.502 Atomic orbital electron populations 1.70057 1.06764 1.26613 1.49122 1.25558 0.95245 1.01490 0.94125 0.85750 0.78603 0.80130 0.78327 1.19686 1.22276 1.19564 1.20698 0.92741 0.89396 1.51230 0.92140 1.19267 0.93254 0.90714 0.95988 1.20778 0.97789 0.95580 0.80853 1.45420 1.08723 1.66312 1.10978 1.18456 0.84531 0.77232 0.86675 1.90686 1.25766 1.54436 1.77240 1.19761 0.94723 1.06071 0.92583 1.21399 0.95876 0.96185 0.95435 1.20867 0.98515 1.01608 0.92187 1.18191 0.93698 1.02133 0.84137 1.18306 0.85074 1.04639 0.90318 1.20431 0.99790 0.98566 0.89563 1.86290 1.33267 1.62041 1.40854 1.23508 0.96205 0.95160 0.88251 1.21897 0.86614 0.76045 0.87342 1.90805 1.82857 1.52707 1.15523 1.43584 1.17918 1.60451 1.07512 1.22967 1.02268 1.06422 0.92521 1.22961 0.98659 0.98715 1.01752 0.93472 0.96279 0.90152 0.75881 0.82869 0.80402 0.84712 0.81213 0.86143 0.73072 0.90579 0.90726 0.89559 0.89592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -46.89 10.11 21.45 0.22 -46.67 16 2 C 0.04 1.85 5.31 84.65 0.45 2.30 16 3 Si 0.95 39.69 29.54 68.60 2.03 41.72 16 4 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 5 H -0.30 -12.90 7.11 99.48 0.71 -12.20 16 6 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 7 C -0.50 -24.03 8.44 25.60 0.22 -23.81 16 8 H 0.06 2.84 7.82 -2.91 -0.02 2.82 16 9 C 0.01 0.37 2.04 -52.93 -0.11 0.26 16 10 C 0.17 7.98 4.62 86.38 0.40 8.38 16 11 N -0.67 -27.12 4.96 -466.19 -2.31 -29.44 16 12 C 0.54 22.25 7.75 86.71 0.67 22.92 16 13 O -0.60 -29.29 16.33 -4.00 -0.07 -29.36 16 14 C -0.13 -3.99 5.88 -20.07 -0.12 -4.11 16 15 C -0.07 -1.62 9.50 22.53 0.21 -1.41 16 16 C -0.11 -1.94 9.92 22.31 0.22 -1.72 16 17 C 0.12 2.26 6.55 38.36 0.25 2.51 16 18 C 0.06 1.53 6.43 22.55 0.15 1.67 16 19 C -0.06 -1.88 9.53 22.59 0.22 -1.66 16 20 O -0.31 -6.84 10.45 -93.98 -0.98 -7.82 16 21 C 0.05 0.71 7.17 71.25 0.51 1.22 16 22 C 0.49 9.46 7.94 87.63 0.70 10.16 16 23 O -0.54 -13.45 17.95 -3.03 -0.05 -13.51 16 24 N -0.65 -10.76 5.45 -302.67 -1.65 -12.40 16 25 C -0.20 -8.31 9.96 30.62 0.30 -8.01 16 26 C -0.18 -6.82 9.92 30.62 0.30 -6.51 16 27 H 0.26 13.44 8.32 -92.71 -0.77 12.67 16 28 H 0.02 0.86 8.09 -2.39 -0.02 0.84 16 29 H 0.08 4.38 5.89 -2.38 -0.01 4.36 16 30 H 0.40 14.76 6.19 -92.71 -0.57 14.19 16 31 H 0.15 3.17 6.46 -2.91 -0.02 3.15 16 32 H 0.18 1.69 8.06 -2.91 -0.02 1.67 16 33 H 0.14 4.36 7.65 -2.91 -0.02 4.34 16 34 H 0.17 1.77 8.14 -2.39 -0.02 1.76 16 35 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.43 5.13 8.88 -92.70 -0.82 4.31 16 37 H 0.08 3.13 8.14 -2.39 -0.02 3.11 16 38 H 0.07 2.91 8.14 -2.39 -0.02 2.89 16 39 H 0.09 2.90 8.14 -2.39 -0.02 2.88 16 40 H 0.09 3.02 8.14 -2.38 -0.02 3.00 16 Total: -1.00 -66.00 343.27 1.27 -64.74 By element: Atomic # 1 Polarization: 30.83 SS G_CDS: -0.28 Total: 30.54 kcal Atomic # 6 Polarization: -2.17 SS G_CDS: 4.37 Total: 2.21 kcal Atomic # 7 Polarization: -84.77 SS G_CDS: -3.75 Total: -88.52 kcal Atomic # 8 Polarization: -49.59 SS G_CDS: -1.10 Total: -50.69 kcal Atomic # 14 Polarization: 39.69 SS G_CDS: 2.03 Total: 41.72 kcal Total: -66.00 1.27 -64.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619541995.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.146 kcal (2) G-P(sol) polarization free energy of solvation -66.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds