Wall clock time and date at job start Tue Mar 31 2020 11:06:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38262 * 119.99015 * 2 1 4 4 C 1.38227 * 120.05195 * 179.97438 * 3 2 1 5 5 C 1.38219 * 120.02402 * 0.25898 * 4 3 2 6 6 C 1.38438 * 119.97312 * 359.48405 * 5 4 3 7 7 F 1.35104 * 120.02404 * 180.25480 * 6 5 4 8 8 C 1.38177 * 119.98498 * 179.97438 * 2 1 3 9 9 C 1.50703 * 120.01185 * 0.02562 * 8 2 1 10 10 N 1.46504 * 109.46896 * 89.99877 * 9 8 2 11 11 S 1.65603 * 119.99803 * 164.99950 * 10 9 8 12 12 O 1.42097 * 106.40171 * 178.54255 * 11 10 9 13 13 O 1.42100 * 106.40036 * 311.45925 * 11 10 9 14 14 N 1.65596 * 107.21668 * 64.99997 * 11 10 9 15 15 C 1.46501 * 120.00062 * 269.99745 * 14 11 10 16 16 C 1.46499 * 120.00010 * 90.00426 * 14 11 10 17 17 C 1.50697 * 109.47756 * 94.99423 * 16 14 11 18 18 H 1.08001 * 119.99412 * 0.02562 * 17 16 14 19 19 C 1.37873 * 120.00258 * 180.02562 * 17 16 14 20 20 N 1.31513 * 120.00236 * 359.97438 * 19 17 16 21 21 Si 1.86807 * 119.99873 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47253 * 89.99896 * 21 19 17 23 23 H 1.48498 * 109.46801 * 210.00025 * 21 19 17 24 24 H 1.48497 * 109.47076 * 329.99724 * 21 19 17 25 25 H 1.09003 * 109.47014 * 90.00105 * 1 2 3 26 26 H 1.08997 * 109.47614 * 210.00522 * 1 2 3 27 27 H 1.09002 * 109.47087 * 330.00369 * 1 2 3 28 28 H 1.07999 * 119.97792 * 359.95482 * 3 2 1 29 29 H 1.08002 * 119.98464 * 179.97438 * 4 3 2 30 30 H 1.08004 * 120.01035 * 179.74654 * 5 4 3 31 31 H 1.08999 * 109.47040 * 209.99975 * 9 8 2 32 32 H 1.08998 * 109.47510 * 329.99856 * 9 8 2 33 33 H 0.97000 * 120.00256 * 344.99981 * 10 9 8 34 34 H 1.08998 * 109.46814 * 90.00079 * 15 14 11 35 35 H 1.09008 * 109.46945 * 210.00098 * 15 14 11 36 36 H 1.09001 * 109.47310 * 330.00055 * 15 14 11 37 37 H 1.09003 * 109.46955 * 215.00062 * 16 14 11 38 38 H 1.09002 * 109.46952 * 334.99664 * 16 14 11 39 39 H 0.96995 * 120.00377 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1975 0.0000 4 6 3.5804 1.1990 0.0005 5 6 4.2733 0.0030 -0.0043 6 6 3.5823 -1.1966 0.0010 7 9 4.2586 -2.3662 0.0015 8 6 2.1976 -1.1968 0.0005 9 6 1.4440 -2.5019 0.0005 10 7 1.2003 -2.9251 -1.3807 11 16 0.7308 -4.4808 -1.6995 12 8 0.5451 -4.5638 -3.1058 13 8 1.6219 -5.3238 -0.9821 14 7 -0.7634 -4.6914 -1.0173 15 6 -0.8777 -5.1704 0.3625 16 6 -1.9708 -4.3988 -1.7935 17 6 -2.4794 -5.6672 -2.4289 18 1 -1.9557 -6.5982 -2.2699 19 6 -3.6131 -5.6390 -3.2130 20 7 -4.2510 -4.5053 -3.4061 21 14 -4.2437 -7.2114 -4.0000 22 1 -5.1987 -7.8777 -3.0784 23 1 -4.9318 -6.8854 -5.2749 24 1 -3.1020 -8.1211 -4.2723 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3634 -0.8899 0.5139 27 1 -0.3633 0.8900 0.5138 28 1 1.6576 2.1325 -0.0007 29 1 4.1191 2.1350 0.0001 30 1 5.3533 0.0045 -0.0081 31 1 2.0328 -3.2615 0.5148 32 1 0.4914 -2.3715 0.5140 33 1 1.3140 -2.2940 -2.1086 34 1 -0.8884 -4.3190 1.0429 35 1 -1.8022 -5.7370 0.4749 36 1 -0.0278 -5.8117 0.5961 37 1 -2.7366 -3.9904 -1.1340 38 1 -1.7357 -3.6720 -2.5711 39 1 -5.0484 -4.4854 -3.9580 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000742326769.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:35 Heat of formation + Delta-G solvation = -98.437239 kcal Electronic energy + Delta-G solvation = -24844.792092 eV Core-core repulsion = 21021.639932 eV Total energy + Delta-G solvation = -3823.152160 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.104 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -48.99694 -39.67440 -36.60615 -35.54742 -35.34526 -35.13707 -32.74535 -32.43079 -30.79592 -27.77705 -27.41465 -25.72751 -25.03790 -22.29684 -22.20451 -21.38023 -18.98773 -17.53349 -17.19999 -16.95897 -16.70854 -16.48124 -16.11070 -15.70969 -15.45109 -14.89553 -14.27588 -14.10819 -13.96243 -13.65616 -13.46155 -13.29981 -13.21127 -13.06023 -12.31996 -12.20996 -12.15378 -12.00042 -11.82284 -11.61010 -11.56856 -11.37680 -11.15673 -11.05999 -10.99083 -10.69161 -10.50968 -10.02816 -9.76649 -9.33124 -9.07574 -8.84313 -8.44538 -8.06930 -6.06594 -4.10316 0.80234 0.94400 1.32142 3.24584 3.31892 3.38313 3.44625 3.64045 4.03940 4.15351 4.34741 4.45205 4.49506 4.64776 4.81155 4.99096 5.08234 5.24716 5.29027 5.34705 5.37571 5.49633 5.58097 5.65482 5.79388 5.87410 5.95167 5.99618 6.03554 6.07552 6.27759 6.30547 6.55713 6.66259 7.08892 7.25348 7.41859 7.61432 7.91262 8.20619 8.92189 9.55016 11.02017 Molecular weight = 316.10amu Principal moments of inertia in cm(-1) A = 0.022494 B = 0.003796 C = 0.003497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.497534 B = 7374.650282 C = 8004.246187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.036 4.036 3 C -0.136 4.136 4 C -0.083 4.083 5 C -0.166 4.166 6 C 0.120 3.880 7 F -0.131 7.131 8 C -0.134 4.134 9 C 0.161 3.839 10 N -1.128 6.128 11 S 2.781 3.219 12 O -0.962 6.962 13 O -0.995 6.995 14 N -0.996 5.996 15 C 0.093 3.907 16 C 0.258 3.742 17 C -0.529 4.529 18 H 0.060 0.940 19 C 0.062 3.938 20 N -0.896 5.896 21 Si 0.897 3.103 22 H -0.280 1.280 23 H -0.285 1.285 24 H -0.272 1.272 25 H 0.082 0.918 26 H 0.078 0.922 27 H 0.071 0.929 28 H 0.130 0.870 29 H 0.132 0.868 30 H 0.135 0.865 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.413 0.587 34 H 0.038 0.962 35 H 0.078 0.922 36 H 0.066 0.934 37 H 0.035 0.965 38 H 0.038 0.962 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.224 13.333 10.277 20.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.037 4.037 3 C -0.154 4.154 4 C -0.102 4.102 5 C -0.185 4.185 6 C 0.100 3.900 7 F -0.110 7.110 8 C -0.136 4.136 9 C 0.035 3.965 10 N -0.887 5.887 11 S 2.789 3.211 12 O -0.946 6.946 13 O -0.979 6.979 14 N -0.839 5.839 15 C -0.053 4.053 16 C 0.136 3.864 17 C -0.569 4.569 18 H 0.078 0.922 19 C -0.140 4.140 20 N -0.535 5.535 21 Si 0.724 3.276 22 H -0.206 1.206 23 H -0.211 1.211 24 H -0.197 1.197 25 H 0.101 0.899 26 H 0.097 0.903 27 H 0.090 0.910 28 H 0.148 0.852 29 H 0.150 0.850 30 H 0.153 0.847 31 H 0.103 0.897 32 H 0.098 0.902 33 H 0.246 0.754 34 H 0.056 0.944 35 H 0.097 0.903 36 H 0.085 0.915 37 H 0.053 0.947 38 H 0.056 0.944 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 12.549 12.550 9.864 20.305 hybrid contribution -0.424 -0.370 -0.599 0.822 sum 12.125 12.180 9.265 19.525 Atomic orbital electron populations 1.20982 0.89922 1.03545 1.03713 1.19762 0.96752 0.91490 0.95725 1.21108 0.94163 0.97770 1.02336 1.21011 0.94202 0.97437 0.97511 1.21127 1.00882 0.91227 1.05284 1.17603 0.89496 0.81605 1.01256 1.91544 1.79911 1.46022 1.93511 1.19784 0.91866 0.96027 1.05965 1.20020 0.99465 0.93202 0.83840 1.56302 1.86053 1.33396 1.12928 1.01974 0.72964 0.72820 0.73374 1.93645 1.85928 1.85278 1.29729 1.93528 1.64228 1.65001 1.75129 1.57609 1.23711 1.79908 1.22625 1.21382 1.03710 0.98516 0.81718 1.19046 0.80641 0.96749 0.89986 1.21508 1.10291 0.94954 1.30115 0.92163 1.24923 0.96474 0.96538 0.96055 1.69911 1.19121 1.25256 1.39257 0.86514 0.78931 0.83353 0.78779 1.20616 1.21059 1.19690 0.89904 0.90342 0.91032 0.85192 0.85038 0.84741 0.89651 0.90157 0.75434 0.94390 0.90311 0.91525 0.94695 0.94429 0.92710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.13 9.60 36.01 0.35 -0.79 16 2 C -0.04 -0.36 5.88 -104.64 -0.62 -0.98 16 3 C -0.14 -1.13 9.70 -39.58 -0.38 -1.51 16 4 C -0.08 -0.66 10.04 -39.59 -0.40 -1.05 16 5 C -0.17 -1.57 10.03 -39.51 -0.40 -1.97 16 6 C 0.12 1.44 7.24 -39.42 -0.29 1.16 16 7 F -0.13 -1.83 16.48 2.25 0.04 -1.79 16 8 C -0.13 -1.57 5.28 -104.55 -0.55 -2.13 16 9 C 0.16 2.10 5.79 -5.19 -0.03 2.07 16 10 N -1.13 -17.28 6.05 -11.65 -0.07 -17.35 16 11 S 2.78 55.75 6.10 -107.50 -0.66 55.09 16 12 O -0.96 -23.29 17.11 -57.17 -0.98 -24.27 16 13 O -1.00 -21.21 16.21 -57.17 -0.93 -22.14 16 14 N -1.00 -20.33 3.23 -123.05 -0.40 -20.73 16 15 C 0.09 1.57 10.68 59.85 0.64 2.20 16 16 C 0.26 6.36 5.08 -5.20 -0.03 6.33 16 17 C -0.53 -14.84 9.38 -34.44 -0.32 -15.17 16 18 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 19 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 20 N -0.90 -25.96 13.29 55.43 0.74 -25.22 16 21 Si 0.90 21.86 29.54 -169.99 -5.02 16.84 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 23 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 24 H -0.27 -6.67 7.11 56.52 0.40 -6.26 16 25 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.08 0.73 5.95 -51.93 -0.31 0.42 16 27 H 0.07 0.51 8.09 -51.93 -0.42 0.09 16 28 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 29 H 0.13 0.68 8.06 -52.49 -0.42 0.25 16 30 H 0.13 1.02 8.06 -52.48 -0.42 0.60 16 31 H 0.09 1.17 7.25 -51.93 -0.38 0.79 16 32 H 0.08 0.91 5.95 -51.93 -0.31 0.60 16 33 H 0.41 5.77 8.64 -34.47 -0.30 5.47 16 34 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.08 1.35 8.07 -51.92 -0.42 0.93 16 36 H 0.07 1.07 7.02 -51.93 -0.36 0.71 16 37 H 0.04 0.86 8.11 -51.93 -0.42 0.44 16 38 H 0.04 0.98 7.61 -51.93 -0.40 0.59 16 39 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 346.74 15.07 5.23 5.23 Total: -1.00 -34.39 346.74 -9.14 -43.54 By element: Atomic # 1 Polarization: 5.93 SS G_CDS: -4.97 Total: 0.96 kcal Atomic # 6 Polarization: -8.05 SS G_CDS: -2.12 Total: -10.17 kcal Atomic # 7 Polarization: -63.56 SS G_CDS: 0.27 Total: -63.30 kcal Atomic # 8 Polarization: -44.50 SS G_CDS: -1.91 Total: -46.40 kcal Atomic # 9 Polarization: -1.83 SS G_CDS: 0.04 Total: -1.79 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Atomic # 16 Polarization: 55.75 SS G_CDS: -0.66 Total: 55.09 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -34.39 -9.14 -43.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000742326769.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.902 kcal (2) G-P(sol) polarization free energy of solvation -34.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds