Wall clock time and date at job start Tue Mar 31 2020 11:00:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86804 * 119.99850 * 2 1 4 4 H 1.48498 * 109.47156 * 239.99660 * 3 2 1 5 5 H 1.48506 * 109.47089 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.46993 * 119.99649 * 3 2 1 7 7 C 1.38811 * 120.00240 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99802 * 197.58688 * 7 2 1 9 9 N 1.36935 * 120.00179 * 17.58418 * 7 2 1 10 10 C 1.46960 * 120.59547 * 208.20891 * 9 7 2 11 11 C 1.53370 * 108.77333 * 235.15856 * 10 9 7 12 12 N 1.47035 * 108.59739 * 310.83085 * 11 10 9 13 13 C 1.34778 * 120.45575 * 235.04862 * 12 11 10 14 14 O 1.21283 * 120.00190 * 179.90414 * 13 12 11 15 15 C 1.50700 * 119.99840 * 359.90394 * 13 12 11 16 16 C 1.52999 * 109.47099 * 179.97438 * 15 13 12 17 17 H 1.08998 * 109.38039 * 305.21279 * 16 15 13 18 18 C 1.52633 * 109.38102 * 185.53225 * 16 15 13 19 19 S 1.81176 * 109.99234 * 172.98998 * 18 16 15 20 20 C 1.81176 * 103.31339 * 62.61545 * 19 18 16 21 21 C 1.52639 * 109.98953 * 297.38874 * 20 19 18 22 22 S 1.81170 * 109.38081 * 65.00155 * 16 15 13 23 23 C 1.46968 * 118.95101 * 54.95389 * 12 11 10 24 24 C 1.46965 * 120.58979 * 28.22813 * 9 7 2 25 25 H 0.96998 * 120.00461 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.61158 * 354.98800 * 10 9 7 27 27 H 1.09001 * 109.60953 * 115.32909 * 10 9 7 28 28 H 1.08997 * 109.60670 * 70.41218 * 11 10 9 29 29 H 1.09005 * 109.60725 * 190.91609 * 11 10 9 30 30 H 1.08996 * 109.47323 * 300.00185 * 15 13 12 31 31 H 1.09005 * 109.46985 * 59.99503 * 15 13 12 32 32 H 1.08996 * 109.38632 * 293.14814 * 18 16 15 33 33 H 1.09000 * 109.38821 * 52.83275 * 18 16 15 34 34 H 1.08998 * 109.38386 * 177.22992 * 20 19 18 35 35 H 1.08994 * 109.29777 * 57.49137 * 20 19 18 36 36 H 1.09003 * 109.38472 * 306.68605 * 21 20 19 37 37 H 1.09004 * 109.37997 * 187.00821 * 21 20 19 38 38 H 1.09003 * 109.60816 * 185.12262 * 23 12 11 39 39 H 1.09004 * 109.75122 * 64.70591 * 23 12 11 40 40 H 1.09000 * 109.61062 * 244.49818 * 24 9 7 41 41 H 1.08998 * 109.61722 * 4.83700 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2124 5 1 1.2851 2.7465 -0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0524 -1.2238 0.2832 9 7 1.3737 -2.3605 -0.3572 10 6 1.8124 -3.6536 0.1861 11 6 2.1165 -4.6016 -0.9806 12 7 0.9837 -4.5706 -1.9175 13 6 0.3574 -5.7108 -2.2700 14 8 -0.5772 -5.6755 -3.0421 15 6 0.8185 -7.0295 -1.7048 16 6 -0.0547 -8.1560 -2.2610 17 1 -1.1027 -7.9347 -2.0589 18 6 0.3230 -9.4709 -1.5842 19 16 -0.8341 -10.7754 -2.0760 20 6 -0.5810 -10.9048 -3.8653 21 6 -0.9586 -9.5898 -4.5421 22 16 0.1984 -8.2852 -4.0503 23 6 0.5450 -3.2774 -2.4607 24 6 0.2397 -2.3328 -1.2917 25 1 -0.4851 0.8400 -0.0004 26 1 2.7111 -3.5122 0.7864 27 1 1.0218 -4.0774 0.8053 28 1 3.0210 -4.2731 -1.4925 29 1 2.2546 -5.6145 -0.6024 30 1 1.8573 -7.2019 -1.9859 31 1 0.7349 -7.0081 -0.6182 32 1 1.3333 -9.7530 -1.8802 33 1 0.2867 -9.3443 -0.5022 34 1 -1.2031 -11.7073 -4.2615 35 1 0.4671 -11.1268 -4.0657 36 1 -1.9691 -9.3076 -4.2461 37 1 -0.9224 -9.7164 -5.6241 38 1 -0.3537 -3.4188 -3.0612 39 1 1.3346 -2.8507 -3.0793 40 1 -0.6640 -2.6641 -0.7802 41 1 0.0978 -1.3186 -1.6650 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000751986922.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:54 Heat of formation + Delta-G solvation = -5.038492 kcal Electronic energy + Delta-G solvation = -22506.331942 eV Core-core repulsion = 19253.443032 eV Total energy + Delta-G solvation = -3252.888910 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 316.102 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.70013 -36.92961 -34.99212 -33.89477 -33.28339 -31.20495 -30.56423 -28.40076 -26.69830 -24.17490 -23.74082 -23.08659 -22.20861 -20.45059 -18.67842 -17.44240 -17.18018 -16.73461 -16.11707 -15.84641 -15.32517 -14.88600 -14.70748 -14.40117 -14.02326 -13.82127 -13.72345 -13.61773 -13.32990 -13.27003 -13.11643 -12.70471 -12.49273 -12.04435 -11.80234 -11.56975 -11.25525 -11.00090 -10.80505 -10.74459 -10.59777 -10.46118 -10.25944 -9.98227 -9.87763 -9.83839 -9.35120 -8.60213 -8.25707 -8.18045 -7.64202 -6.73596 -5.86666 -3.31933 1.25017 1.46228 2.04581 2.35891 3.00676 3.33983 3.38884 3.40634 3.42828 4.23216 4.32935 4.43035 4.52806 4.64923 4.72263 4.91074 4.94447 5.09142 5.20205 5.21458 5.26158 5.31049 5.39624 5.43059 5.66951 5.70924 5.75223 5.85789 6.14189 6.33379 6.37586 6.48977 6.66972 6.85582 7.25193 7.53498 7.70266 7.91343 8.34361 8.58362 9.10037 9.72965 10.29460 11.20799 Molecular weight = 316.10amu Principal moments of inertia in cm(-1) A = 0.038160 B = 0.002819 C = 0.002743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.570433 B = 9929.815972 C =10205.911066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.005 3.995 3 Si 0.905 3.095 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.260 4.260 8 H 0.067 0.933 9 N -0.591 5.591 10 C 0.131 3.869 11 C 0.088 3.912 12 N -0.597 5.597 13 C 0.505 3.495 14 O -0.533 6.533 15 C -0.121 4.121 16 C -0.042 4.042 17 H 0.107 0.893 18 C -0.083 4.083 19 S -0.254 6.254 20 C -0.087 4.087 21 C -0.098 4.098 22 S -0.216 6.216 23 C 0.089 3.911 24 C 0.159 3.841 25 H 0.256 0.744 26 H 0.066 0.934 27 H 0.022 0.978 28 H 0.065 0.935 29 H 0.071 0.929 30 H 0.099 0.901 31 H 0.108 0.892 32 H 0.097 0.903 33 H 0.118 0.882 34 H 0.113 0.887 35 H 0.095 0.905 36 H 0.096 0.904 37 H 0.114 0.886 38 H 0.080 0.920 39 H 0.058 0.942 40 H 0.022 0.978 41 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.751 -20.771 -5.326 21.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.194 4.194 3 Si 0.734 3.266 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.208 1.208 7 C -0.389 4.389 8 H 0.085 0.915 9 N -0.314 5.314 10 C 0.003 3.997 11 C -0.037 4.037 12 N -0.330 5.330 13 C 0.291 3.709 14 O -0.410 6.410 15 C -0.163 4.163 16 C -0.173 4.173 17 H 0.125 0.875 18 C -0.234 4.234 19 S -0.026 6.026 20 C -0.238 4.238 21 C -0.248 4.248 22 S 0.012 5.988 23 C -0.034 4.034 24 C 0.032 3.968 25 H 0.066 0.934 26 H 0.085 0.915 27 H 0.040 0.960 28 H 0.084 0.916 29 H 0.090 0.910 30 H 0.117 0.883 31 H 0.126 0.874 32 H 0.116 0.884 33 H 0.136 0.864 34 H 0.131 0.869 35 H 0.113 0.887 36 H 0.114 0.886 37 H 0.132 0.868 38 H 0.099 0.901 39 H 0.077 0.923 40 H 0.040 0.960 41 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 1.124 -20.599 -5.734 21.412 hybrid contribution 0.474 0.890 0.136 1.018 sum 1.598 -19.709 -5.598 20.551 Atomic orbital electron populations 1.70010 1.05337 1.25919 1.53121 1.25077 0.95280 0.98583 1.00506 0.86344 0.78926 0.83151 0.78177 1.20921 1.21567 1.20817 1.19137 0.92793 0.84745 1.42219 0.91531 1.43977 1.36759 1.01399 1.49225 1.21263 0.98382 0.87484 0.92531 1.22397 0.88711 1.00161 0.92392 1.48043 1.32940 1.06823 1.45204 1.20242 0.83417 0.85241 0.81985 1.90712 1.28487 1.86436 1.35413 1.21548 1.00791 0.91733 1.02268 1.23081 1.04632 0.95544 0.94039 0.87450 1.23667 1.01109 0.94053 1.04546 1.86815 1.56890 1.50188 1.08658 1.23575 1.06106 1.00376 0.93728 1.23561 1.02454 0.94522 1.04275 1.87006 1.54425 1.49214 1.08157 1.22463 0.99819 0.82716 0.98418 1.21189 0.88991 0.98708 0.87898 0.93360 0.91539 0.95981 0.91618 0.91022 0.88270 0.87396 0.88436 0.86437 0.86852 0.88654 0.88551 0.86819 0.90117 0.92318 0.95951 0.88280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.61 11.20 55.49 0.62 -24.99 16 2 C 0.00 0.13 4.90 -17.43 -0.09 0.04 16 3 Si 0.90 21.11 29.59 -169.99 -5.03 16.08 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.26 -6.84 9.57 -15.06 -0.14 -6.99 16 8 H 0.07 1.70 7.89 -52.49 -0.41 1.29 16 9 N -0.59 -14.22 2.97 -172.05 -0.51 -14.73 16 10 C 0.13 2.51 6.67 -3.60 -0.02 2.48 16 11 C 0.09 1.37 6.51 -3.56 -0.02 1.34 16 12 N -0.60 -10.52 2.95 -172.43 -0.51 -11.03 16 13 C 0.50 8.35 7.40 -10.98 -0.08 8.27 16 14 O -0.53 -10.46 14.19 5.56 0.08 -10.38 16 15 C -0.12 -1.40 3.50 -27.88 -0.10 -1.50 16 16 C -0.04 -0.47 2.02 -26.92 -0.05 -0.53 16 17 H 0.11 1.43 7.95 -51.92 -0.41 1.01 16 18 C -0.08 -0.73 5.53 36.97 0.20 -0.53 16 19 S -0.25 -2.42 22.05 -107.50 -2.37 -4.79 16 20 C -0.09 -0.68 6.25 36.97 0.23 -0.45 16 21 C -0.10 -0.90 6.25 36.97 0.23 -0.67 16 22 S -0.22 -2.68 19.85 -107.50 -2.13 -4.81 16 23 C 0.09 1.79 6.60 -3.60 -0.02 1.77 16 24 C 0.16 3.75 5.52 -3.60 -0.02 3.73 16 25 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 26 H 0.07 1.20 7.93 -51.93 -0.41 0.79 16 27 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.07 0.83 5.91 -51.93 -0.31 0.52 16 30 H 0.10 1.01 7.91 -51.93 -0.41 0.60 16 31 H 0.11 1.05 7.70 -51.93 -0.40 0.65 16 32 H 0.10 0.77 8.14 -51.92 -0.42 0.35 16 33 H 0.12 0.88 8.12 -51.92 -0.42 0.45 16 34 H 0.11 0.69 8.14 -51.92 -0.42 0.26 16 35 H 0.09 0.70 8.14 -51.92 -0.42 0.27 16 36 H 0.10 0.96 8.14 -51.92 -0.42 0.53 16 37 H 0.11 0.87 8.14 -51.92 -0.42 0.44 16 38 H 0.08 1.64 6.99 -51.93 -0.36 1.28 16 39 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 40 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.10 2.60 5.98 -51.93 -0.31 2.29 16 LS Contribution 342.82 15.07 5.17 5.17 Total: -1.00 -31.22 342.82 -10.96 -42.19 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: -6.39 Total: 0.31 kcal Atomic # 6 Polarization: 6.87 SS G_CDS: 0.11 Total: 6.99 kcal Atomic # 7 Polarization: -50.35 SS G_CDS: -0.40 Total: -50.75 kcal Atomic # 8 Polarization: -10.46 SS G_CDS: 0.08 Total: -10.38 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.03 Total: 16.08 kcal Atomic # 16 Polarization: -5.10 SS G_CDS: -4.50 Total: -9.60 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.22 -10.96 -42.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751986922.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.149 kcal (2) G-P(sol) polarization free energy of solvation -31.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds