Wall clock time and date at job start Tue Mar 31 2020 11:00:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86804 * 119.99850 * 2 1 4 4 H 1.48498 * 109.47156 * 239.99660 * 3 2 1 5 5 H 1.48506 * 109.47089 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.46993 * 119.99649 * 3 2 1 7 7 C 1.38811 * 120.00240 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99802 * 197.58688 * 7 2 1 9 9 N 1.36935 * 120.00179 * 17.58418 * 7 2 1 10 10 C 1.46960 * 120.59547 * 208.20891 * 9 7 2 11 11 C 1.53370 * 108.77333 * 235.15856 * 10 9 7 12 12 N 1.47035 * 108.59739 * 310.83085 * 11 10 9 13 13 C 1.34778 * 120.45575 * 235.04862 * 12 11 10 14 14 O 1.21283 * 120.00190 * 179.90414 * 13 12 11 15 15 C 1.50700 * 119.99840 * 359.90394 * 13 12 11 16 16 C 1.52999 * 109.47099 * 179.97438 * 15 13 12 17 17 H 1.08998 * 109.38039 * 305.21279 * 16 15 13 18 18 C 1.52633 * 109.38102 * 185.53225 * 16 15 13 19 19 S 1.81176 * 109.99234 * 172.98998 * 18 16 15 20 20 C 1.81176 * 103.31339 * 62.61545 * 19 18 16 21 21 C 1.52639 * 109.98953 * 297.38874 * 20 19 18 22 22 S 1.81170 * 109.38081 * 65.00155 * 16 15 13 23 23 C 1.46968 * 118.95101 * 54.95389 * 12 11 10 24 24 C 1.46965 * 120.58979 * 28.22813 * 9 7 2 25 25 H 0.96998 * 120.00461 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.61158 * 354.98800 * 10 9 7 27 27 H 1.09001 * 109.60953 * 115.32909 * 10 9 7 28 28 H 1.08997 * 109.60670 * 70.41218 * 11 10 9 29 29 H 1.09005 * 109.60725 * 190.91609 * 11 10 9 30 30 H 1.08996 * 109.47323 * 300.00185 * 15 13 12 31 31 H 1.09005 * 109.46985 * 59.99503 * 15 13 12 32 32 H 1.08996 * 109.38632 * 293.14814 * 18 16 15 33 33 H 1.09000 * 109.38821 * 52.83275 * 18 16 15 34 34 H 1.08998 * 109.38386 * 177.22992 * 20 19 18 35 35 H 1.08994 * 109.29777 * 57.49137 * 20 19 18 36 36 H 1.09003 * 109.38472 * 306.68605 * 21 20 19 37 37 H 1.09004 * 109.37997 * 187.00821 * 21 20 19 38 38 H 1.09003 * 109.60816 * 185.12262 * 23 12 11 39 39 H 1.09004 * 109.75122 * 64.70591 * 23 12 11 40 40 H 1.09000 * 109.61062 * 244.49818 * 24 9 7 41 41 H 1.08998 * 109.61722 * 4.83700 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2124 5 1 1.2851 2.7465 -0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0524 -1.2238 0.2832 9 7 1.3737 -2.3605 -0.3572 10 6 1.8124 -3.6536 0.1861 11 6 2.1165 -4.6016 -0.9806 12 7 0.9837 -4.5706 -1.9175 13 6 0.3574 -5.7108 -2.2700 14 8 -0.5772 -5.6755 -3.0421 15 6 0.8185 -7.0295 -1.7048 16 6 -0.0547 -8.1560 -2.2610 17 1 -1.1027 -7.9347 -2.0589 18 6 0.3230 -9.4709 -1.5842 19 16 -0.8341 -10.7754 -2.0760 20 6 -0.5810 -10.9048 -3.8653 21 6 -0.9586 -9.5898 -4.5421 22 16 0.1984 -8.2852 -4.0503 23 6 0.5450 -3.2774 -2.4607 24 6 0.2397 -2.3328 -1.2917 25 1 -0.4851 0.8400 -0.0004 26 1 2.7111 -3.5122 0.7864 27 1 1.0218 -4.0774 0.8053 28 1 3.0210 -4.2731 -1.4925 29 1 2.2546 -5.6145 -0.6024 30 1 1.8573 -7.2019 -1.9859 31 1 0.7349 -7.0081 -0.6182 32 1 1.3333 -9.7530 -1.8802 33 1 0.2867 -9.3443 -0.5022 34 1 -1.2031 -11.7073 -4.2615 35 1 0.4671 -11.1268 -4.0657 36 1 -1.9691 -9.3076 -4.2461 37 1 -0.9224 -9.7164 -5.6241 38 1 -0.3537 -3.4188 -3.0612 39 1 1.3346 -2.8507 -3.0793 40 1 -0.6640 -2.6641 -0.7802 41 1 0.0978 -1.3186 -1.6650 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000751986922.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:54 Heat of formation + Delta-G solvation = -23.142684 kcal Electronic energy + Delta-G solvation = -22507.116999 eV Core-core repulsion = 19253.443032 eV Total energy + Delta-G solvation = -3253.673967 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 316.102 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.06230 -38.50435 -35.91437 -35.60482 -34.00732 -33.05003 -32.12595 -29.54628 -28.29325 -25.47474 -24.85204 -24.51399 -23.36218 -21.97728 -20.13106 -18.82439 -18.18013 -17.91039 -17.44784 -16.79846 -16.68302 -16.66865 -15.82675 -15.48989 -15.29195 -15.16508 -15.01999 -14.83437 -14.79245 -14.34623 -13.99753 -13.87564 -13.55762 -13.36008 -13.10819 -13.04283 -12.62686 -12.48506 -12.44289 -12.29964 -11.99771 -11.88871 -11.69532 -11.66065 -11.21851 -10.79539 -10.60938 -10.55597 -9.77169 -8.94751 -8.65968 -8.55873 -7.88649 -5.37034 0.55212 0.68226 1.34817 1.47850 1.50896 1.57111 1.57227 1.73097 2.09456 2.51181 3.26124 3.32551 3.59498 3.62735 3.65708 3.88789 4.00778 4.02300 4.26170 4.27333 4.32700 4.33860 4.43000 4.51310 4.56621 4.57864 4.60548 4.69624 4.74636 4.82542 4.83125 4.91038 5.07922 5.26432 5.47296 5.61081 5.69859 6.35170 6.57973 7.09297 7.26542 7.79790 8.32588 9.16439 Molecular weight = 316.10amu Principal moments of inertia in cm(-1) A = 0.038160 B = 0.002819 C = 0.002743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.570433 B = 9929.815972 C =10205.911066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.051 4.051 3 Si 0.968 3.032 4 H -0.278 1.278 5 H -0.298 1.298 6 H -0.272 1.272 7 C -0.263 4.263 8 H 0.076 0.924 9 N -0.610 5.610 10 C 0.124 3.876 11 C 0.098 3.902 12 N -0.605 5.605 13 C 0.500 3.500 14 O -0.569 6.569 15 C -0.113 4.113 16 C -0.029 4.029 17 H 0.081 0.919 18 C -0.072 4.072 19 S -0.286 6.286 20 C -0.076 4.076 21 C -0.084 4.084 22 S -0.274 6.274 23 C 0.105 3.895 24 C 0.171 3.829 25 H 0.250 0.750 26 H 0.080 0.920 27 H 0.018 0.982 28 H 0.071 0.929 29 H 0.123 0.877 30 H 0.125 0.875 31 H 0.137 0.863 32 H 0.112 0.888 33 H 0.136 0.864 34 H 0.134 0.866 35 H 0.104 0.896 36 H 0.085 0.915 37 H 0.130 0.870 38 H 0.071 0.929 39 H 0.059 0.941 40 H -0.009 1.009 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.861 -23.124 -5.016 23.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.247 4.247 3 Si 0.796 3.204 4 H -0.204 1.204 5 H -0.225 1.225 6 H -0.198 1.198 7 C -0.393 4.393 8 H 0.094 0.906 9 N -0.333 5.333 10 C -0.002 4.002 11 C -0.025 4.025 12 N -0.338 5.338 13 C 0.289 3.711 14 O -0.449 6.449 15 C -0.154 4.154 16 C -0.160 4.160 17 H 0.100 0.900 18 C -0.222 4.222 19 S -0.058 6.058 20 C -0.226 4.226 21 C -0.234 4.234 22 S -0.046 6.046 23 C -0.019 4.019 24 C 0.045 3.955 25 H 0.059 0.941 26 H 0.098 0.902 27 H 0.036 0.964 28 H 0.090 0.910 29 H 0.141 0.859 30 H 0.143 0.857 31 H 0.155 0.845 32 H 0.131 0.869 33 H 0.154 0.846 34 H 0.152 0.848 35 H 0.123 0.877 36 H 0.103 0.897 37 H 0.148 0.852 38 H 0.090 0.910 39 H 0.078 0.922 40 H 0.009 0.991 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.270 -23.003 -5.409 23.856 hybrid contribution -0.236 1.552 0.026 1.570 sum 3.034 -21.451 -5.383 22.323 Atomic orbital electron populations 1.70175 1.06886 1.26059 1.55158 1.25849 0.95941 1.01765 1.01123 0.85327 0.77511 0.79059 0.78458 1.20364 1.22476 1.19790 1.19536 0.93292 0.85765 1.40744 0.90649 1.44241 1.36510 1.02796 1.49794 1.21505 0.98552 0.85929 0.94188 1.22426 0.87788 1.01919 0.90387 1.48134 1.33773 1.06076 1.45778 1.21131 0.82442 0.86366 0.81172 1.90700 1.30072 1.87097 1.37004 1.21616 1.01930 0.88344 1.03556 1.22988 1.03104 0.96893 0.93023 0.90031 1.23621 1.01351 0.92003 1.05236 1.86963 1.57830 1.50430 1.10547 1.23575 1.07106 0.99881 0.92043 1.23561 1.00637 0.93913 1.05306 1.87125 1.55694 1.51524 1.10246 1.21991 0.99564 0.83756 0.96620 1.20850 0.88186 0.97704 0.88808 0.94091 0.90193 0.96427 0.91038 0.85911 0.85663 0.84526 0.86905 0.84649 0.84829 0.87701 0.89675 0.85248 0.91035 0.92219 0.99081 0.91548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.22 11.20 21.65 0.24 -54.97 16 2 C -0.05 -2.81 4.90 84.86 0.42 -2.39 16 3 Si 0.97 43.88 29.59 68.60 2.03 45.91 16 4 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 5 H -0.30 -13.80 7.11 99.48 0.71 -13.09 16 6 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 7 C -0.26 -13.87 9.57 84.03 0.80 -13.07 16 8 H 0.08 3.76 7.89 -2.91 -0.02 3.74 16 9 N -0.61 -29.42 2.97 -698.23 -2.07 -31.49 16 10 C 0.12 4.53 6.67 86.42 0.58 5.10 16 11 C 0.10 2.72 6.51 86.40 0.56 3.29 16 12 N -0.60 -20.43 2.95 -817.82 -2.41 -22.84 16 13 C 0.50 15.78 7.40 87.66 0.65 16.43 16 14 O -0.57 -22.38 14.19 -3.04 -0.04 -22.42 16 15 C -0.11 -2.22 3.50 29.85 0.10 -2.12 16 16 C -0.03 -0.59 2.02 30.47 0.06 -0.53 16 17 H 0.08 2.10 7.95 -2.40 -0.02 2.08 16 18 C -0.07 -1.03 5.53 71.86 0.40 -0.64 16 19 S -0.29 -4.83 22.05 -56.49 -1.25 -6.08 16 20 C -0.08 -0.99 6.25 71.86 0.45 -0.54 16 21 C -0.08 -1.42 6.25 71.86 0.45 -0.97 16 22 S -0.27 -6.41 19.85 -56.49 -1.12 -7.53 16 23 C 0.11 4.30 6.60 86.41 0.57 4.87 16 24 C 0.17 8.41 5.52 86.41 0.48 8.89 16 25 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16 26 H 0.08 2.68 7.93 -2.39 -0.02 2.66 16 27 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 29 H 0.12 2.17 5.91 -2.38 -0.01 2.16 16 30 H 0.13 1.92 7.91 -2.39 -0.02 1.90 16 31 H 0.14 1.98 7.70 -2.38 -0.02 1.96 16 32 H 0.11 1.33 8.14 -2.40 -0.02 1.31 16 33 H 0.14 1.48 8.12 -2.39 -0.02 1.46 16 34 H 0.13 1.23 8.14 -2.40 -0.02 1.21 16 35 H 0.10 1.22 8.14 -2.40 -0.02 1.20 16 36 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.13 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.07 3.02 6.99 -2.39 -0.02 3.01 16 39 H 0.06 2.40 8.14 -2.39 -0.02 2.39 16 40 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 41 H 0.07 3.68 5.98 -2.39 -0.01 3.66 16 Total: -1.00 -70.93 342.82 1.91 -69.03 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: 1.01 Total: 12.07 kcal Atomic # 6 Polarization: 12.81 SS G_CDS: 5.52 Total: 18.33 kcal Atomic # 7 Polarization: -105.06 SS G_CDS: -4.24 Total: -109.31 kcal Atomic # 8 Polarization: -22.38 SS G_CDS: -0.04 Total: -22.42 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Atomic # 16 Polarization: -11.24 SS G_CDS: -2.37 Total: -13.61 kcal Total: -70.93 1.91 -69.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751986922.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.885 kcal (2) G-P(sol) polarization free energy of solvation -70.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds