Wall clock time and date at job start Tue Mar 31 2020 10:46:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30615 * 1 3 3 Si 1.86796 * 120.00349 * 2 1 4 4 H 1.48501 * 109.47408 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47203 * 299.99690 * 3 2 1 6 6 H 1.48500 * 109.47316 * 59.99784 * 3 2 1 7 7 C 1.40294 * 119.99809 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00134 * 170.76194 * 7 2 1 9 9 C 1.40865 * 120.00210 * 350.76100 * 7 2 1 10 10 C 1.40713 * 120.32621 * 325.82540 * 9 7 2 11 11 C 1.37593 * 119.88203 * 180.02562 * 10 9 7 12 12 C 1.38839 * 120.58767 * 0.02562 * 11 10 9 13 13 C 1.38198 * 120.67996 * 359.97438 * 12 11 10 14 14 C 1.39293 * 120.08973 * 0.02562 * 13 12 11 15 15 C 1.47284 * 120.29240 * 179.97438 * 14 13 12 16 16 O 1.21530 * 120.00352 * 174.20693 * 15 14 13 17 17 O 1.34804 * 119.99653 * 354.19753 * 15 14 13 18 18 C 1.45204 * 116.99794 * 180.02562 * 17 15 14 19 19 C 1.53007 * 109.46966 * 180.02562 * 18 17 15 20 20 H 1.08998 * 110.37937 * 307.38902 * 19 18 17 21 21 C 1.54727 * 110.42562 * 184.99822 * 19 18 17 22 22 C 1.53888 * 101.89014 * 214.86624 * 21 19 18 23 23 C 1.52332 * 121.20395 * 231.06940 * 22 21 19 24 24 C 1.52325 * 121.22419 * 159.07181 * 22 21 19 25 25 C 1.50699 * 105.54690 * 15.04186 * 22 21 19 26 26 O 1.20831 * 125.26054 * 182.37539 * 25 22 21 27 27 O 1.34293 * 109.48308 * 2.37969 * 25 22 21 28 28 H 0.97001 * 119.99290 * 0.02562 * 1 2 3 29 29 H 1.08001 * 120.05681 * 0.02562 * 10 9 7 30 30 H 1.08006 * 119.70812 * 180.27668 * 11 10 9 31 31 H 1.08000 * 119.66294 * 180.02562 * 12 11 10 32 32 H 1.08001 * 119.95933 * 180.02562 * 13 12 11 33 33 H 1.09007 * 109.47079 * 299.99868 * 18 17 15 34 34 H 1.08998 * 109.47183 * 60.00272 * 18 17 15 35 35 H 1.09005 * 110.94714 * 333.01013 * 21 19 18 36 36 H 1.08996 * 110.95038 * 96.67739 * 21 19 18 37 37 H 1.08992 * 117.52162 * 356.78892 * 23 22 21 38 38 H 1.09003 * 117.51337 * 141.91946 * 23 22 21 39 39 H 1.08998 * 117.51478 * 218.05468 * 24 22 21 40 40 H 1.08997 * 117.51686 * 3.18060 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3062 0.0000 0.0000 3 14 2.2402 1.6176 0.0000 4 1 3.7002 1.3463 -0.0006 5 1 1.8816 2.3964 -1.2126 6 1 1.8815 2.3964 1.2125 7 6 2.0076 -1.2150 0.0005 8 1 3.0771 -1.2212 -0.1496 9 6 1.3170 -2.4269 0.1969 10 6 0.1989 -2.4774 1.0498 11 6 -0.4686 -3.6662 1.2355 12 6 -0.0489 -4.8206 0.5883 13 6 1.0462 -4.7981 -0.2545 14 6 1.7427 -3.6100 -0.4628 15 6 2.9107 -3.5810 -1.3597 16 8 3.4504 -2.5239 -1.6207 17 8 3.3811 -4.7272 -1.8909 18 6 4.5355 -4.6234 -2.7655 19 6 4.9212 -6.0160 -3.2685 20 1 5.0413 -6.7024 -2.4304 21 6 6.2232 -5.9477 -4.1016 22 6 5.9717 -7.0246 -5.1718 23 6 6.9970 -8.1167 -5.4487 24 6 6.7370 -7.0230 -6.4888 25 6 4.4948 -7.3178 -5.1104 26 8 3.9196 -8.1454 -5.7769 27 8 3.9166 -6.5171 -4.2005 28 1 -0.4849 0.8401 -0.0004 29 1 -0.1347 -1.5846 1.5578 30 1 -1.3291 -3.7008 1.8872 31 1 -0.5841 -5.7456 0.7445 32 1 1.3623 -5.7029 -0.7523 33 1 4.2915 -3.9853 -3.6150 34 1 5.3710 -4.1913 -2.2147 35 1 6.3427 -4.9652 -4.5582 36 1 7.0903 -6.1995 -3.4910 37 1 7.9373 -8.0757 -4.8992 38 1 6.6214 -9.1168 -5.6651 39 1 6.1906 -7.3039 -7.3891 40 1 7.5065 -6.2628 -6.6231 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000763105878.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:46:36 Heat of formation + Delta-G solvation = -136.512654 kcal Electronic energy + Delta-G solvation = -25469.386742 eV Core-core repulsion = 21600.307110 eV Total energy + Delta-G solvation = -3869.079631 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.119 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.34148 -41.13603 -39.19620 -38.71514 -37.76906 -37.07465 -35.62462 -33.07237 -31.94347 -31.46782 -28.89595 -27.43277 -25.48823 -24.22114 -23.56889 -23.00784 -22.86251 -21.47951 -20.99712 -19.39036 -18.58673 -18.15767 -17.87893 -17.61658 -17.25179 -16.94154 -16.64357 -16.11543 -15.98566 -15.45232 -15.09137 -14.96374 -14.50428 -14.28287 -14.13616 -14.03090 -13.80892 -13.45848 -13.41611 -13.10333 -12.88136 -12.86296 -12.57917 -12.45614 -12.35321 -11.97711 -11.85284 -11.69729 -11.60211 -11.53366 -11.24946 -11.19825 -11.12977 -10.69772 -9.52995 -9.33785 -8.75008 -6.46730 0.31611 0.77550 0.97571 1.35286 1.48467 1.51155 1.82609 1.97322 2.02434 2.18994 2.69409 2.71043 2.80216 3.20161 3.32162 3.61851 3.68883 3.84736 3.91970 3.99115 4.24423 4.32854 4.39782 4.46196 4.57739 4.60298 4.68347 4.79383 4.82249 4.90553 4.91918 5.05716 5.15587 5.17409 5.26125 5.47021 5.59475 5.66530 5.78869 5.98882 6.05144 6.26595 6.28474 6.61026 6.76633 6.85931 7.21820 8.22419 Molecular weight = 316.12amu Principal moments of inertia in cm(-1) A = 0.017645 B = 0.003165 C = 0.002793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.464241 B = 8844.413181 C =10023.270080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.814 5.814 2 C 0.032 3.968 3 Si 0.985 3.015 4 H -0.263 1.263 5 H -0.267 1.267 6 H -0.253 1.253 7 C -0.453 4.453 8 H 0.089 0.911 9 C 0.120 3.880 10 C -0.174 4.174 11 C -0.083 4.083 12 C -0.240 4.240 13 C -0.040 4.040 14 C -0.276 4.276 15 C 0.508 3.492 16 O -0.540 6.540 17 O -0.365 6.365 18 C 0.062 3.938 19 C 0.090 3.910 20 H 0.124 0.876 21 C -0.095 4.095 22 C -0.235 4.235 23 C -0.115 4.115 24 C -0.124 4.124 25 C 0.505 3.495 26 O -0.500 6.500 27 O -0.363 6.363 28 H 0.293 0.707 29 H 0.108 0.892 30 H 0.126 0.874 31 H 0.131 0.869 32 H 0.122 0.878 33 H 0.067 0.933 34 H 0.113 0.887 35 H 0.107 0.893 36 H 0.142 0.858 37 H 0.144 0.856 38 H 0.097 0.903 39 H 0.094 0.906 40 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.938 -9.409 -5.886 18.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C -0.185 4.185 3 Si 0.805 3.195 4 H -0.187 1.187 5 H -0.192 1.192 6 H -0.177 1.177 7 C -0.480 4.480 8 H 0.106 0.894 9 C 0.116 3.884 10 C -0.193 4.193 11 C -0.102 4.102 12 C -0.259 4.259 13 C -0.058 4.058 14 C -0.279 4.279 15 C 0.359 3.641 16 O -0.433 6.433 17 O -0.284 6.284 18 C -0.012 4.012 19 C 0.035 3.965 20 H 0.141 0.859 21 C -0.132 4.132 22 C -0.236 4.236 23 C -0.151 4.151 24 C -0.160 4.160 25 C 0.348 3.652 26 O -0.388 6.388 27 O -0.280 6.280 28 H 0.104 0.896 29 H 0.126 0.874 30 H 0.144 0.856 31 H 0.149 0.851 32 H 0.140 0.860 33 H 0.085 0.915 34 H 0.131 0.869 35 H 0.126 0.874 36 H 0.160 0.840 37 H 0.162 0.838 38 H 0.116 0.884 39 H 0.113 0.887 40 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 14.413 -9.284 -6.267 18.254 hybrid contribution -0.362 0.879 -0.201 0.971 sum 14.051 -8.406 -6.468 17.605 Atomic orbital electron populations 1.69734 1.08869 1.31122 1.34224 1.26909 0.95658 1.04651 0.91247 0.85115 0.79248 0.75873 0.79248 1.18716 1.19176 1.17745 1.20259 0.96826 0.90983 1.39976 0.89353 1.17833 0.91107 0.91669 0.87743 1.21308 0.99210 0.97368 1.01427 1.21244 0.98185 0.92677 0.98053 1.20821 1.01187 0.98665 1.05210 1.21123 0.93905 0.95642 0.95166 1.19103 1.02214 0.97406 1.09154 1.21273 0.83518 0.80845 0.78428 1.90708 1.59790 1.31834 1.60927 1.86583 1.46469 1.35694 1.59635 1.23275 0.88107 0.96304 0.93476 1.24009 0.86166 0.94681 0.91620 0.85877 1.22512 0.96427 0.99316 0.94905 1.22261 0.90495 1.05985 1.04891 1.23160 0.97729 0.93368 1.00857 1.23094 1.00449 1.02415 0.90078 1.22637 0.89349 0.76523 0.76664 1.90643 1.72805 1.30814 1.44491 1.87191 1.40141 1.59309 1.41366 0.89581 0.87364 0.85583 0.85083 0.85969 0.91478 0.86946 0.87413 0.83974 0.83761 0.88427 0.88727 0.84246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -42.13 11.14 21.88 0.24 -41.88 16 2 C 0.03 1.62 5.25 85.37 0.45 2.07 16 3 Si 0.98 39.39 29.57 68.60 2.03 41.42 16 4 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 5 H -0.27 -10.34 7.11 99.48 0.71 -9.63 16 6 H -0.25 -9.29 7.11 99.48 0.71 -8.58 16 7 C -0.45 -25.16 7.68 23.41 0.18 -24.98 16 8 H 0.09 5.06 5.92 -2.91 -0.02 5.05 16 9 C 0.12 6.56 5.51 -21.10 -0.12 6.45 16 10 C -0.17 -8.85 8.62 22.72 0.20 -8.66 16 11 C -0.08 -3.62 10.01 22.26 0.22 -3.40 16 12 C -0.24 -9.92 10.03 22.40 0.22 -9.70 16 13 C -0.04 -1.78 9.60 22.51 0.22 -1.57 16 14 C -0.28 -14.05 5.92 -19.71 -0.12 -14.17 16 15 C 0.51 24.48 7.84 70.20 0.55 25.03 16 16 O -0.54 -28.04 13.39 19.74 0.26 -27.78 16 17 O -0.37 -14.42 9.49 -56.72 -0.54 -14.96 16 18 C 0.06 1.78 5.13 71.98 0.37 2.15 16 19 C 0.09 1.95 3.85 31.19 0.12 2.07 16 20 H 0.12 2.28 8.14 -2.39 -0.02 2.26 16 21 C -0.09 -1.16 6.48 31.48 0.20 -0.96 16 22 C -0.23 -3.74 2.44 -53.07 -0.13 -3.87 16 23 C -0.11 -1.14 10.28 30.42 0.31 -0.83 16 24 C -0.12 -1.37 10.28 30.42 0.31 -1.06 16 25 C 0.50 14.04 8.34 71.24 0.59 14.64 16 26 O -0.50 -17.33 18.00 21.60 0.39 -16.94 16 27 O -0.36 -11.15 10.77 -51.93 -0.56 -11.71 16 28 H 0.29 13.55 8.29 -92.71 -0.77 12.78 16 29 H 0.11 5.64 6.59 -2.91 -0.02 5.62 16 30 H 0.13 4.60 8.06 -2.91 -0.02 4.57 16 31 H 0.13 4.45 8.06 -2.91 -0.02 4.43 16 32 H 0.12 4.88 7.61 -2.91 -0.02 4.86 16 33 H 0.07 2.06 8.14 -2.38 -0.02 2.04 16 34 H 0.11 2.71 8.14 -2.39 -0.02 2.69 16 35 H 0.11 1.15 7.93 -2.38 -0.02 1.13 16 36 H 0.14 0.69 8.13 -2.39 -0.02 0.67 16 37 H 0.14 0.50 8.14 -2.39 -0.02 0.48 16 38 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.14 0.77 8.14 -2.39 -0.02 0.75 16 Total: -1.00 -73.51 348.51 6.49 -67.02 By element: Atomic # 1 Polarization: 20.55 SS G_CDS: 1.07 Total: 21.62 kcal Atomic # 6 Polarization: -20.38 SS G_CDS: 3.59 Total: -16.79 kcal Atomic # 7 Polarization: -42.13 SS G_CDS: 0.24 Total: -41.88 kcal Atomic # 8 Polarization: -70.94 SS G_CDS: -0.44 Total: -71.39 kcal Atomic # 14 Polarization: 39.39 SS G_CDS: 2.03 Total: 41.42 kcal Total: -73.51 6.49 -67.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000763105878.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.489 kcal (2) G-P(sol) polarization free energy of solvation -73.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds