Wall clock time and date at job start Tue Mar 31 2020 10:49:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86804 * 119.99641 * 2 1 4 4 H 1.48503 * 109.46498 * 239.99611 * 3 2 1 5 5 H 1.48496 * 109.47252 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47152 * 120.00048 * 3 2 1 7 7 C 1.39931 * 120.00265 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00703 * 197.73092 * 7 2 1 9 9 C 1.41438 * 120.00024 * 17.73427 * 7 2 1 10 10 C 1.40795 * 120.17730 * 204.35995 * 9 7 2 11 11 C 1.37714 * 120.05204 * 180.02562 * 10 9 7 12 12 C 1.38361 * 120.41728 * 359.95212 * 11 10 9 13 13 C 1.39931 * 120.35589 * 0.04534 * 12 11 10 14 14 C 1.47767 * 120.03269 * 179.97438 * 13 12 11 15 15 O 1.21458 * 120.00082 * 180.02562 * 14 13 12 16 16 O 1.34705 * 119.99634 * 359.97438 * 14 13 12 17 17 C 1.45204 * 116.99552 * 180.02562 * 16 14 13 18 18 C 1.53001 * 109.46970 * 179.97438 * 17 16 14 19 19 H 1.09008 * 110.38212 * 52.61438 * 18 17 16 20 20 C 1.54737 * 110.42773 * 175.00147 * 18 17 16 21 21 C 1.53879 * 101.88848 * 145.13962 * 20 18 17 22 22 C 1.52323 * 121.21936 * 200.93028 * 21 20 18 23 23 C 1.52333 * 121.20939 * 128.93829 * 21 20 18 24 24 C 1.50704 * 105.55059 * 344.95371 * 21 20 18 25 25 O 1.20824 * 125.26027 * 177.60134 * 24 21 20 26 26 O 1.34295 * 109.47698 * 357.62788 * 24 21 20 27 27 C 1.39082 * 119.93600 * 0.25365 * 13 12 11 28 28 H 0.96992 * 120.00451 * 0.02562 * 1 2 3 29 29 H 1.07994 * 119.97163 * 359.97438 * 10 9 7 30 30 H 1.07997 * 119.79228 * 179.97438 * 11 10 9 31 31 H 1.08006 * 119.82248 * 180.02562 * 12 11 10 32 32 H 1.09004 * 109.46832 * 60.00596 * 17 16 14 33 33 H 1.08995 * 109.47512 * 300.00118 * 17 16 14 34 34 H 1.08998 * 110.94268 * 263.28832 * 20 18 17 35 35 H 1.09001 * 110.94129 * 26.98635 * 20 18 17 36 36 H 1.09000 * 117.52167 * 356.82131 * 22 21 20 37 37 H 1.09004 * 117.51323 * 141.93687 * 22 21 20 38 38 H 1.08999 * 117.51361 * 218.08564 * 23 21 20 39 39 H 1.09002 * 117.51141 * 3.19888 * 23 21 20 40 40 H 1.07998 * 120.20509 * 179.72256 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.0960 1.6964 -1.2125 5 1 1.2772 2.7465 -0.0006 6 1 3.0960 1.6966 1.2125 7 6 2.0080 -1.2118 0.0005 8 1 3.0495 -1.2340 0.2854 9 6 1.3513 -2.4078 -0.3720 10 6 1.8277 -3.6499 0.0889 11 6 1.1866 -4.8129 -0.2759 12 6 0.0721 -4.7712 -1.0948 13 6 -0.4162 -3.5461 -1.5627 14 6 -1.6067 -3.5099 -2.4374 15 8 -2.0297 -2.4463 -2.8436 16 8 -2.2221 -4.6567 -2.7850 17 6 -3.3852 -4.5454 -3.6471 18 6 -3.9443 -5.9408 -3.9318 19 1 -4.1146 -6.4791 -2.9993 20 6 -5.2568 -5.8411 -4.7453 21 6 -5.1658 -7.0843 -5.6475 22 6 -5.9689 -7.1838 -6.9380 23 6 -6.3180 -8.0761 -5.7434 24 6 -3.7309 -7.5380 -5.5667 25 8 -3.2769 -8.5161 -6.1117 26 8 -3.0351 -6.6874 -4.7948 27 6 0.2236 -2.3631 -1.2086 28 1 -0.4850 0.8399 -0.0004 29 1 2.6970 -3.6908 0.7283 30 1 1.5558 -5.7634 0.0797 31 1 -0.4236 -5.6891 -1.3746 32 1 -3.0978 -4.0711 -4.5855 33 1 -4.1470 -3.9421 -3.1534 34 1 -6.1263 -5.8977 -4.0904 35 1 -5.2778 -4.9282 -5.3405 36 1 -6.6502 -6.3656 -7.1716 37 1 -5.4882 -7.6552 -7.7952 38 1 -6.0669 -9.1344 -5.8148 39 1 -7.2289 -7.8447 -5.1912 40 1 -0.1469 -1.4155 -1.5709 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000763124389.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:49:41 Heat of formation + Delta-G solvation = -123.471165 kcal Electronic energy + Delta-G solvation = -25072.457570 eV Core-core repulsion = 21203.943461 eV Total energy + Delta-G solvation = -3868.514110 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.119 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.48739 -39.82118 -37.87885 -37.34464 -37.12072 -35.81434 -33.78365 -32.18276 -30.36918 -29.53435 -28.07577 -25.42706 -24.55052 -23.10898 -22.99452 -22.16210 -21.01992 -20.21513 -19.86881 -17.93548 -17.45217 -17.01100 -16.67714 -16.20918 -16.00748 -15.64256 -15.41044 -14.96472 -14.68639 -14.42708 -13.74102 -13.54604 -13.31830 -13.22044 -13.00628 -12.81673 -12.63094 -12.33993 -12.13495 -12.03671 -11.70865 -11.22102 -11.16744 -11.13649 -10.95502 -10.79511 -10.58310 -10.55944 -10.42380 -10.35829 -10.24928 -9.75857 -9.53997 -9.26145 -7.77696 -7.58295 -6.85724 -4.46391 1.67142 1.92750 2.76385 2.82563 2.91099 3.04503 3.06118 3.12811 3.28371 3.47801 3.54682 3.87912 3.88406 3.98741 4.25029 4.54605 4.56070 4.59176 4.67933 4.99601 5.07994 5.13027 5.21425 5.29492 5.34180 5.43001 5.51701 5.56516 5.70016 6.10984 6.38994 6.51995 6.58290 6.84129 6.90993 6.94579 7.14152 7.23726 7.28021 7.65330 7.72459 7.87962 8.07283 8.41005 8.46500 8.74054 8.76085 10.09717 Molecular weight = 316.12amu Principal moments of inertia in cm(-1) A = 0.025985 B = 0.002575 C = 0.002414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.280850 B =10872.978086 C =11595.211628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.073 3.927 3 Si 0.912 3.088 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.264 1.264 7 C -0.460 4.460 8 H 0.082 0.918 9 C 0.095 3.905 10 C -0.200 4.200 11 C -0.104 4.104 12 C -0.192 4.192 13 C -0.115 4.115 14 C 0.515 3.485 15 O -0.517 6.517 16 O -0.350 6.350 17 C 0.067 3.933 18 C 0.090 3.910 19 H 0.111 0.889 20 C -0.111 4.111 21 C -0.223 4.223 22 C -0.130 4.130 23 C -0.132 4.132 24 C 0.515 3.485 25 O -0.453 6.453 26 O -0.325 6.325 27 C -0.089 4.089 28 H 0.285 0.715 29 H 0.099 0.901 30 H 0.097 0.903 31 H 0.104 0.896 32 H 0.081 0.919 33 H 0.095 0.905 34 H 0.104 0.896 35 H 0.098 0.902 36 H 0.111 0.889 37 H 0.107 0.893 38 H 0.108 0.892 39 H 0.111 0.889 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.758 -8.970 -8.080 18.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C -0.145 4.145 3 Si 0.736 3.264 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.189 1.189 7 C -0.489 4.489 8 H 0.101 0.899 9 C 0.093 3.907 10 C -0.220 4.220 11 C -0.122 4.122 12 C -0.212 4.212 13 C -0.117 4.117 14 C 0.362 3.638 15 O -0.407 6.407 16 O -0.267 6.267 17 C -0.008 4.008 18 C 0.035 3.965 19 H 0.129 0.871 20 C -0.149 4.149 21 C -0.225 4.225 22 C -0.167 4.167 23 C -0.168 4.168 24 C 0.355 3.645 25 O -0.337 6.337 26 O -0.242 6.242 27 C -0.109 4.109 28 H 0.096 0.904 29 H 0.117 0.883 30 H 0.115 0.885 31 H 0.122 0.878 32 H 0.099 0.901 33 H 0.113 0.887 34 H 0.123 0.877 35 H 0.117 0.883 36 H 0.129 0.871 37 H 0.125 0.875 38 H 0.126 0.874 39 H 0.129 0.871 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -13.665 -8.914 -8.440 18.370 hybrid contribution 0.134 0.907 0.042 0.918 sum -13.532 -8.007 -8.398 17.826 Atomic orbital electron populations 1.69765 1.07606 1.29908 1.33951 1.25962 0.94787 1.01595 0.92204 0.86304 0.80102 0.79966 0.80046 1.18694 1.20232 1.18905 1.19539 0.98221 0.90912 1.40203 0.89949 1.17541 0.91176 0.92613 0.89408 1.21199 1.03082 0.92706 1.04995 1.20519 0.96082 0.96958 0.98629 1.20586 1.00110 0.95326 1.05167 1.18805 0.94780 0.95960 1.02120 1.21904 0.83095 0.80648 0.78144 1.90764 1.65218 1.31162 1.53554 1.86647 1.41348 1.36366 1.62369 1.22988 0.88128 0.94201 0.95459 1.23773 0.86930 0.92359 0.93480 0.87132 1.22437 0.97561 0.97130 0.97725 1.22305 0.93525 1.01299 1.05355 1.22915 1.00381 1.02600 0.90831 1.22970 0.95959 0.96871 1.01038 1.21839 0.86151 0.80337 0.76202 1.90694 1.76063 1.22116 1.44820 1.87251 1.36643 1.50282 1.49986 1.21652 0.96519 0.95966 0.96739 0.90373 0.88303 0.88471 0.87791 0.90087 0.88741 0.87746 0.88320 0.87078 0.87462 0.87411 0.87112 0.84663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.34 10.96 55.55 0.61 -19.73 16 2 C 0.07 1.82 5.14 -17.35 -0.09 1.73 16 3 Si 0.91 18.41 29.59 -169.99 -5.03 13.38 16 4 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 5 H -0.28 -5.48 7.11 56.52 0.40 -5.08 16 6 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 7 C -0.46 -11.85 9.05 -37.73 -0.34 -12.19 16 8 H 0.08 2.01 7.91 -52.48 -0.41 1.59 16 9 C 0.10 2.48 5.57 -106.87 -0.60 1.88 16 10 C -0.20 -4.70 9.78 -38.81 -0.38 -5.08 16 11 C -0.10 -2.24 10.01 -39.73 -0.40 -2.64 16 12 C -0.19 -4.25 9.62 -38.90 -0.37 -4.62 16 13 C -0.12 -2.76 5.87 -105.05 -0.62 -3.38 16 14 C 0.51 11.29 7.90 34.63 0.27 11.56 16 15 O -0.52 -12.17 16.12 -19.23 -0.31 -12.48 16 16 O -0.35 -6.37 9.46 -40.96 -0.39 -6.75 16 17 C 0.07 0.88 5.13 37.16 0.19 1.07 16 18 C 0.09 0.95 3.84 -25.82 -0.10 0.85 16 19 H 0.11 1.03 8.14 -51.92 -0.42 0.60 16 20 C -0.11 -0.77 6.48 -25.36 -0.16 -0.93 16 21 C -0.22 -1.86 2.44 -155.89 -0.38 -2.24 16 22 C -0.13 -0.82 10.28 -27.01 -0.28 -1.09 16 23 C -0.13 -0.79 10.27 -27.00 -0.28 -1.07 16 24 C 0.51 6.69 8.34 36.01 0.30 6.99 16 25 O -0.45 -7.22 18.00 -18.38 -0.33 -7.55 16 26 O -0.33 -4.61 10.77 -39.53 -0.43 -5.04 16 27 C -0.09 -2.34 8.24 -38.42 -0.32 -2.66 16 28 H 0.29 6.76 8.30 -40.82 -0.34 6.42 16 29 H 0.10 2.14 8.06 -52.49 -0.42 1.72 16 30 H 0.10 1.79 8.06 -52.49 -0.42 1.36 16 31 H 0.10 2.09 7.59 -52.48 -0.40 1.69 16 32 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 34 H 0.10 0.45 8.13 -51.93 -0.42 0.03 16 35 H 0.10 0.59 7.93 -51.93 -0.41 0.18 16 36 H 0.11 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.11 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.11 0.43 8.14 -51.93 -0.42 0.00 16 40 H 0.14 3.78 5.75 -52.49 -0.30 3.47 16 LS Contribution 352.88 15.07 5.32 5.32 Total: -1.00 -31.43 352.88 -8.99 -40.42 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: -4.89 Total: 4.26 kcal Atomic # 6 Polarization: -8.28 SS G_CDS: -3.55 Total: -11.83 kcal Atomic # 7 Polarization: -20.34 SS G_CDS: 0.61 Total: -19.73 kcal Atomic # 8 Polarization: -30.36 SS G_CDS: -1.45 Total: -31.82 kcal Atomic # 14 Polarization: 18.41 SS G_CDS: -5.03 Total: 13.38 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.43 -8.99 -40.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000763124389.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.051 kcal (2) G-P(sol) polarization free energy of solvation -31.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds