Wall clock time and date at job start Tue Mar 31 2020 10:45:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 120.00064 * 2 1 4 4 H 1.48500 * 109.47312 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47105 * 300.00442 * 3 2 1 6 6 H 1.48501 * 109.47040 * 60.00031 * 3 2 1 7 7 C 1.37878 * 120.00285 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99906 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99680 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46801 * 179.97438 * 9 7 2 11 11 H 1.09002 * 109.47398 * 305.00045 * 10 9 7 12 12 N 1.46896 * 109.47053 * 65.00291 * 10 9 7 13 13 C 1.46901 * 110.99913 * 205.00062 * 12 10 9 14 14 C 1.50703 * 109.47196 * 180.02562 * 13 12 10 15 15 C 1.38224 * 119.60662 * 94.72138 * 14 13 12 16 16 C 1.38609 * 119.17658 * 179.79566 * 15 14 13 17 17 C 1.38790 * 118.40930 * 0.47173 * 16 15 14 18 18 Cl 1.73590 * 120.43191 * 179.77487 * 17 16 15 19 19 C 1.38302 * 119.13078 * 359.74963 * 17 16 15 20 20 N 1.31853 * 119.59900 * 274.99699 * 14 13 12 21 21 C 1.50703 * 109.46912 * 184.99967 * 10 9 7 22 22 C 1.38233 * 119.99662 * 279.72689 * 21 10 9 23 23 C 1.38238 * 119.99748 * 179.80858 * 22 21 10 24 24 C 1.38238 * 119.99869 * 0.39869 * 23 22 21 25 25 C 1.38232 * 120.00036 * 359.86136 * 24 23 22 26 26 C 1.38232 * 120.00031 * 359.94639 * 25 24 23 27 27 H 0.96998 * 119.99928 * 359.97438 * 1 2 3 28 28 H 1.09002 * 109.47083 * 59.99880 * 9 7 2 29 29 H 1.08991 * 109.46995 * 299.99937 * 9 7 2 30 30 H 1.00896 * 111.00728 * 81.04206 * 12 10 9 31 31 H 1.09007 * 109.47248 * 299.99411 * 13 12 10 32 32 H 1.08990 * 109.47767 * 59.99672 * 13 12 10 33 33 H 1.07999 * 120.41259 * 359.97438 * 15 14 13 34 34 H 1.07997 * 120.79813 * 180.19863 * 16 15 14 35 35 H 1.08003 * 119.62314 * 180.02562 * 19 17 16 36 36 H 1.08003 * 120.00479 * 0.02562 * 22 21 10 37 37 H 1.07997 * 120.00351 * 180.22988 * 23 22 21 38 38 H 1.08003 * 120.00083 * 179.82956 * 24 23 22 39 39 H 1.08001 * 119.99800 * 179.97438 * 25 24 23 40 40 H 1.08005 * 120.00320 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6620 -0.0018 11 1 2.9289 -3.5548 -0.8441 12 7 3.0093 -3.6544 1.2528 13 6 4.3104 -4.3145 1.0809 14 6 5.0636 -4.2878 2.3860 15 6 4.9886 -5.3721 3.2400 16 6 5.6883 -5.3398 4.4360 17 6 6.4336 -4.2077 4.7347 18 17 7.3254 -4.1089 6.2208 19 6 6.4568 -3.1596 3.8327 20 7 5.7817 -3.2281 2.7019 21 6 1.4959 -4.9636 -0.1257 22 6 0.8999 -5.5265 0.9874 23 6 0.2091 -6.7184 0.8730 24 6 0.1212 -7.3515 -0.3527 25 6 0.7217 -6.7913 -1.4646 26 6 1.4092 -5.5974 -1.3511 27 1 -0.4850 0.8400 0.0004 28 1 0.6240 -2.5567 -0.8903 29 1 0.6248 -2.5571 0.8896 30 1 2.4827 -4.0822 1.9996 31 1 4.1554 -5.3484 0.7725 32 1 4.8859 -3.7902 0.3181 33 1 4.3946 -6.2349 2.9772 34 1 5.6510 -6.1738 5.1212 35 1 7.0345 -2.2750 4.0569 36 1 0.9711 -5.0334 1.9456 37 1 -0.2597 -7.1564 1.7418 38 1 -0.4162 -8.2841 -0.4415 39 1 0.6534 -7.2861 -2.4222 40 1 1.8780 -5.1594 -2.2199 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000778233055.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:45:54 Heat of formation + Delta-G solvation = 34.573932 kcal Electronic energy + Delta-G solvation = -22946.356573 eV Core-core repulsion = 19557.697729 eV Total energy + Delta-G solvation = -3388.658844 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 316.104 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.35529 -40.41025 -37.81531 -37.36511 -34.99446 -33.57453 -33.42734 -31.78395 -31.08483 -30.41055 -27.16126 -25.68190 -24.74932 -23.76852 -23.27662 -22.68528 -21.15437 -18.70737 -18.08240 -17.86453 -17.57631 -16.87475 -16.48423 -16.42651 -16.05836 -15.52300 -15.28201 -14.80064 -14.75182 -14.51555 -14.26283 -14.13467 -13.97512 -13.64366 -13.37757 -13.35934 -12.90816 -12.87669 -12.75706 -12.47416 -12.29853 -12.19325 -11.98910 -11.72152 -11.48926 -11.10535 -10.87740 -10.50302 -10.46908 -9.91478 -9.75947 -9.49501 -9.14286 -8.09625 -6.14045 -0.15103 0.17761 0.52938 0.56238 0.98371 1.39925 1.41537 1.55223 2.47608 2.55641 2.95675 3.21678 3.25813 3.49081 3.72440 3.76376 3.92035 3.97171 4.03470 4.19117 4.23156 4.34633 4.44038 4.54274 4.64138 4.70280 4.74753 4.79277 4.88497 4.98530 5.02398 5.18012 5.21733 5.46925 5.49285 5.60506 5.64371 5.66708 5.72854 5.90086 6.19168 6.26550 6.41501 6.60655 6.93810 6.99703 7.51601 9.02432 Molecular weight = 316.10amu Principal moments of inertia in cm(-1) A = 0.007986 B = 0.004566 C = 0.003082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3505.091106 B = 6130.923036 C = 9081.369140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.003 4.003 3 Si 0.953 3.047 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.284 1.284 7 C -0.495 4.495 8 H 0.056 0.944 9 C 0.053 3.947 10 C 0.148 3.852 11 H 0.068 0.932 12 N -0.667 5.667 13 C 0.114 3.886 14 C 0.127 3.873 15 C -0.148 4.148 16 C -0.060 4.060 17 C -0.095 4.095 18 Cl -0.049 7.049 19 C 0.102 3.898 20 N -0.484 5.484 21 C -0.113 4.113 22 C -0.132 4.132 23 C -0.118 4.118 24 C -0.130 4.130 25 C -0.120 4.120 26 C -0.132 4.132 27 H 0.258 0.742 28 H -0.010 1.010 29 H -0.010 1.010 30 H 0.337 0.663 31 H 0.063 0.937 32 H 0.072 0.928 33 H 0.168 0.832 34 H 0.175 0.825 35 H 0.172 0.828 36 H 0.116 0.884 37 H 0.143 0.857 38 H 0.148 0.852 39 H 0.143 0.857 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.660 -18.541 7.320 22.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.199 4.199 3 Si 0.780 3.220 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.210 1.210 7 C -0.534 4.534 8 H 0.074 0.926 9 C 0.016 3.984 10 C 0.038 3.962 11 H 0.087 0.913 12 N -0.299 5.299 13 C -0.015 4.015 14 C -0.011 4.011 15 C -0.168 4.168 16 C -0.086 4.086 17 C -0.124 4.124 18 Cl -0.020 7.020 19 C -0.056 4.056 20 N -0.194 5.194 21 C -0.114 4.114 22 C -0.150 4.150 23 C -0.136 4.136 24 C -0.148 4.148 25 C -0.138 4.138 26 C -0.151 4.151 27 H 0.067 0.933 28 H 0.009 0.991 29 H 0.009 0.991 30 H 0.158 0.842 31 H 0.081 0.919 32 H 0.090 0.910 33 H 0.185 0.815 34 H 0.192 0.808 35 H 0.189 0.811 36 H 0.134 0.866 37 H 0.161 0.839 38 H 0.166 0.834 39 H 0.161 0.839 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 9.907 -17.066 6.764 20.860 hybrid contribution -0.101 -0.010 0.600 0.608 sum 9.806 -17.076 7.364 21.023 Atomic orbital electron populations 1.70099 1.07451 1.27011 1.53576 1.25794 0.95563 1.02625 0.95898 0.85566 0.79118 0.79968 0.77383 1.19259 1.20561 1.21012 1.21474 0.93184 0.91494 1.47210 0.92616 1.18862 0.93042 0.92182 0.94354 1.20455 0.93701 0.90623 0.91420 0.91340 1.60437 1.03802 1.58805 1.06808 1.20765 0.89992 0.97989 0.92773 1.21405 0.93693 0.89420 0.96564 1.22240 1.00455 1.00282 0.93831 1.21840 0.92794 0.97186 0.96808 1.22173 1.00884 0.98254 0.91116 1.98376 1.73633 1.98292 1.31740 1.23052 0.96056 0.98094 0.88377 1.67643 1.07121 1.26175 1.18432 1.20892 0.99316 0.96476 0.94753 1.21040 0.99027 0.96816 0.98152 1.21384 0.98437 0.94838 0.98953 1.21462 0.99925 1.00977 0.92428 1.21423 0.97170 0.95290 0.99923 1.21242 1.00692 0.96333 0.96798 0.93300 0.99136 0.99145 0.84245 0.91908 0.90988 0.81497 0.80757 0.81114 0.86648 0.83887 0.83381 0.83885 0.86211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.71 13.29 21.45 0.28 -58.43 16 2 C 0.00 -0.17 5.46 84.66 0.46 0.29 16 3 Si 0.95 46.99 29.54 68.60 2.03 49.01 16 4 H -0.27 -12.94 7.11 99.48 0.71 -12.24 16 5 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 6 H -0.28 -13.78 7.11 99.48 0.71 -13.08 16 7 C -0.50 -28.78 8.84 25.60 0.23 -28.55 16 8 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 9 C 0.05 2.81 4.63 29.85 0.14 2.94 16 10 C 0.15 5.96 2.17 44.17 0.10 6.06 16 11 H 0.07 2.82 7.66 -2.39 -0.02 2.80 16 12 N -0.67 -24.71 5.93 -499.46 -2.96 -27.67 16 13 C 0.11 3.47 5.79 85.56 0.50 3.96 16 14 C 0.13 3.58 6.29 42.55 0.27 3.85 16 15 C -0.15 -3.03 9.72 22.36 0.22 -2.82 16 16 C -0.06 -1.09 9.98 22.49 0.22 -0.86 16 17 C -0.10 -2.01 6.34 22.42 0.14 -1.87 16 18 Cl -0.05 -0.89 28.99 -2.72 -0.08 -0.96 16 19 C 0.10 2.65 10.99 84.70 0.93 3.58 16 20 N -0.48 -15.46 10.27 -183.80 -1.89 -17.35 16 21 C -0.11 -3.80 4.71 -19.87 -0.09 -3.89 16 22 C -0.13 -3.95 9.12 22.27 0.20 -3.74 16 23 C -0.12 -2.83 10.05 22.27 0.22 -2.61 16 24 C -0.13 -2.84 10.05 22.27 0.22 -2.61 16 25 C -0.12 -2.89 10.05 22.27 0.22 -2.67 16 26 C -0.13 -3.97 9.67 22.27 0.22 -3.76 16 27 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 28 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 29 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 30 H 0.34 11.61 6.33 -89.70 -0.57 11.04 16 31 H 0.06 1.61 7.90 -2.38 -0.02 1.59 16 32 H 0.07 2.42 8.05 -2.39 -0.02 2.41 16 33 H 0.17 2.48 8.06 -2.91 -0.02 2.46 16 34 H 0.18 1.99 8.06 -2.91 -0.02 1.96 16 35 H 0.17 3.82 8.06 -2.91 -0.02 3.80 16 36 H 0.12 3.44 6.50 -2.91 -0.02 3.43 16 37 H 0.14 2.60 8.06 -2.91 -0.02 2.57 16 38 H 0.15 2.24 8.06 -2.91 -0.02 2.22 16 39 H 0.14 2.61 8.06 -2.91 -0.02 2.59 16 40 H 0.12 3.48 8.04 -2.91 -0.02 3.46 16 Total: -1.00 -71.20 358.36 2.06 -69.14 By element: Atomic # 1 Polarization: 18.46 SS G_CDS: 0.48 Total: 18.95 kcal Atomic # 6 Polarization: -36.88 SS G_CDS: 4.20 Total: -32.69 kcal Atomic # 7 Polarization: -98.88 SS G_CDS: -4.57 Total: -103.45 kcal Atomic # 14 Polarization: 46.99 SS G_CDS: 2.03 Total: 49.01 kcal Atomic # 17 Polarization: -0.89 SS G_CDS: -0.08 Total: -0.96 kcal Total: -71.20 2.06 -69.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000778233055.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.715 kcal (2) G-P(sol) polarization free energy of solvation -71.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.141 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds