Wall clock time and date at job start Tue Mar 31 2020 11:10:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.34300 * 125.79306 * 2 1 4 4 C 1.34303 * 109.47973 * 180.23720 * 3 2 1 5 5 C 1.34512 * 108.41941 * 359.77313 * 4 3 2 6 6 C 1.34513 * 125.78947 * 179.83824 * 2 1 3 7 7 C 1.50704 * 126.57821 * 0.03354 * 6 2 1 8 8 O 1.45205 * 109.47181 * 179.71245 * 7 6 2 9 9 C 1.34223 * 116.99935 * 179.97438 * 8 7 6 10 10 O 1.20826 * 120.00436 * 0.02562 * 9 8 7 11 11 C 1.50703 * 119.99861 * 179.72349 * 9 8 7 12 12 C 1.50695 * 109.47439 * 180.27641 * 11 9 8 13 13 C 1.38320 * 119.96930 * 269.72988 * 12 11 9 14 14 C 1.38275 * 120.14137 * 179.76310 * 13 12 11 15 15 C 1.38121 * 120.06802 * 0.50871 * 14 13 12 16 16 C 1.38851 * 119.92958 * 359.74573 * 15 14 13 17 17 O 1.35757 * 120.07035 * 179.97438 * 16 15 14 18 18 C 1.34835 * 116.99568 * 354.48557 * 17 16 15 19 19 H 1.07997 * 119.99929 * 5.05388 * 18 17 16 20 20 C 1.38648 * 119.99641 * 185.05950 * 18 17 16 21 21 N 1.31558 * 120.00544 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00011 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47354 * 59.99549 * 22 20 18 24 24 H 1.48501 * 109.47589 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.46962 * 299.99840 * 22 20 18 26 26 C 1.38079 * 119.96679 * 89.99801 * 12 11 9 27 27 H 1.08998 * 109.47166 * 270.16064 * 1 2 3 28 28 H 1.09000 * 109.47136 * 30.16439 * 1 2 3 29 29 H 1.09007 * 109.47027 * 150.16270 * 1 2 3 30 30 H 1.08001 * 125.79053 * 179.74530 * 4 3 2 31 31 H 1.08001 * 126.57976 * 179.97438 * 5 4 3 32 32 H 1.09002 * 109.46928 * 59.71769 * 7 6 2 33 33 H 1.08995 * 109.47323 * 299.71494 * 7 6 2 34 34 H 1.09000 * 109.47174 * 300.27883 * 11 9 8 35 35 H 1.08996 * 109.47148 * 60.27640 * 11 9 8 36 36 H 1.08006 * 119.92616 * 359.97438 * 13 12 11 37 37 H 1.08005 * 119.96670 * 180.24931 * 14 13 12 38 38 H 1.08001 * 120.03252 * 179.76515 * 15 14 13 39 39 H 0.96998 * 120.00549 * 180.02562 * 21 20 18 40 40 H 1.08000 * 120.03527 * 359.96214 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2925 1.0894 0.0000 4 6 3.5814 0.7121 -0.0052 5 6 3.6309 -0.6321 -0.0036 6 6 2.2936 -1.0911 0.0031 7 6 1.8372 -2.5274 0.0064 8 8 2.9952 -3.4033 0.0023 9 6 2.7597 -4.7247 0.0051 10 8 1.6236 -5.1360 0.0104 11 6 3.9124 -5.6955 -0.0052 12 6 3.3814 -7.1059 -0.0064 13 6 3.1507 -7.7583 1.1912 14 6 2.6589 -9.0507 1.1943 15 6 2.4064 -9.6979 0.0005 16 6 2.6419 -9.0475 -1.2035 17 8 2.3952 -9.6811 -2.3785 18 6 2.0319 -10.9778 -2.3102 19 1 1.8693 -11.4431 -1.3492 20 6 1.8671 -11.7137 -3.4736 21 7 2.0648 -11.1468 -4.6442 22 14 1.3631 -13.5099 -3.3790 23 1 0.0492 -13.6201 -2.6957 24 1 1.2548 -14.0667 -4.7515 25 1 2.3838 -14.2709 -2.6147 26 6 3.1309 -7.7475 -1.2032 27 1 -0.3633 0.0029 1.0276 28 1 -0.3633 0.8885 -0.5164 29 1 -0.3633 -0.8915 -0.5113 30 1 4.4337 1.3755 -0.0104 31 1 4.5212 -1.2434 -0.0071 32 1 1.2336 -2.7188 -0.8809 33 1 1.2412 -2.7171 0.8991 34 1 4.5157 -5.5337 -0.8984 35 1 4.5268 -5.5395 0.8815 36 1 3.3519 -7.2561 2.1259 37 1 2.4760 -9.5561 2.1311 38 1 2.0259 -10.7086 0.0035 39 1 1.9491 -11.6616 -5.4582 40 1 3.3147 -7.2389 -2.1380 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000788189447.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:53 Heat of formation + Delta-G solvation = -74.781449 kcal Electronic energy + Delta-G solvation = -24520.608764 eV Core-core repulsion = 20654.205999 eV Total energy + Delta-G solvation = -3866.402765 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.119 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.88133 -40.41762 -38.96922 -36.97721 -36.18627 -34.03439 -32.45172 -32.16391 -32.06470 -29.31722 -28.58638 -27.18145 -25.76258 -25.21086 -22.31175 -21.65922 -21.24568 -20.34192 -20.00986 -17.75059 -17.49123 -17.43524 -16.95376 -16.78771 -16.23272 -15.78574 -15.09607 -14.70069 -14.65414 -14.40493 -13.86633 -13.61888 -13.55193 -13.41604 -13.27750 -13.23635 -12.92624 -12.67121 -12.47633 -12.21936 -11.93798 -11.90589 -11.57409 -11.27070 -10.98885 -10.86479 -10.80011 -10.64382 -10.46018 -10.31728 -9.84717 -9.34469 -8.82514 -8.62537 -8.11744 -7.23242 -6.42896 -4.02236 1.41789 1.95636 2.29386 2.35449 2.38122 2.66877 2.84332 3.14491 3.15755 3.18220 3.97914 4.40447 4.44362 4.56226 4.73995 4.85634 4.94894 5.01863 5.05385 5.11032 5.15696 5.19313 5.27278 5.36922 5.47602 5.48899 5.63497 5.73244 5.78678 5.88183 5.91815 6.15821 6.20957 6.32216 6.44287 6.65032 6.83930 6.89879 7.06462 7.22689 7.35541 7.43332 7.79967 7.89473 8.01669 9.02520 9.72541 10.75156 Molecular weight = 316.12amu Principal moments of inertia in cm(-1) A = 0.024056 B = 0.002230 C = 0.002152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.663962 B =12555.584312 C =13010.293845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.004 4.004 3 O -0.174 6.174 4 C -0.049 4.049 5 C -0.185 4.185 6 C -0.185 4.185 7 C 0.142 3.858 8 O -0.356 6.356 9 C 0.461 3.539 10 O -0.489 6.489 11 C -0.063 4.063 12 C -0.044 4.044 13 C -0.195 4.195 14 C -0.074 4.074 15 C -0.227 4.227 16 C 0.154 3.846 17 O -0.178 6.178 18 C -0.392 4.392 19 H 0.091 0.909 20 C 0.039 3.961 21 N -0.864 5.864 22 Si 0.941 3.059 23 H -0.270 1.270 24 H -0.278 1.278 25 H -0.270 1.270 26 C -0.172 4.172 27 H 0.084 0.916 28 H 0.079 0.921 29 H 0.089 0.911 30 H 0.205 0.795 31 H 0.155 0.845 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.112 0.888 35 H 0.110 0.890 36 H 0.104 0.896 37 H 0.109 0.891 38 H 0.127 0.873 39 H 0.270 0.730 40 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.301 20.152 10.511 22.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.055 4.055 3 O -0.071 6.071 4 C -0.116 4.116 5 C -0.204 4.204 6 C -0.187 4.187 7 C 0.068 3.932 8 O -0.274 6.274 9 C 0.303 3.697 10 O -0.374 6.374 11 C -0.100 4.100 12 C -0.045 4.045 13 C -0.214 4.214 14 C -0.093 4.093 15 C -0.247 4.247 16 C 0.100 3.900 17 O -0.082 6.082 18 C -0.468 4.468 19 H 0.109 0.891 20 C -0.165 4.165 21 N -0.499 5.499 22 Si 0.766 3.234 23 H -0.195 1.195 24 H -0.203 1.203 25 H -0.195 1.195 26 C -0.191 4.191 27 H 0.102 0.898 28 H 0.098 0.902 29 H 0.108 0.892 30 H 0.221 0.779 31 H 0.172 0.828 32 H 0.099 0.901 33 H 0.098 0.902 34 H 0.130 0.870 35 H 0.128 0.872 36 H 0.123 0.877 37 H 0.127 0.873 38 H 0.145 0.855 39 H 0.080 0.920 40 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 1.807 20.344 10.008 22.744 hybrid contribution -0.189 -1.065 0.085 1.085 sum 1.618 19.279 10.093 21.821 Atomic orbital electron populations 1.20377 0.84849 1.04403 1.03803 1.22028 0.93897 0.83453 1.06098 1.84027 1.16978 1.34343 1.71711 1.24015 0.84146 0.96050 1.07419 1.21674 0.97764 0.94360 1.06578 1.19893 0.94162 0.94143 1.10459 1.20962 0.85958 0.83540 1.02736 1.86455 1.38178 1.18099 1.84680 1.23861 0.91631 0.81410 0.72820 1.90723 1.24202 1.78753 1.43740 1.20254 0.94292 0.89449 1.06043 1.18660 1.00118 0.92295 0.93384 1.20372 1.08800 0.96218 0.96000 1.20688 0.97325 0.94358 0.96884 1.21203 1.09394 1.01981 0.92100 1.19262 0.92143 0.91925 0.86639 1.83981 1.74373 1.25104 1.24699 1.21274 1.47370 0.83530 0.94647 0.89129 1.25280 0.96926 1.00115 0.94184 1.70029 1.45419 1.36986 0.97433 0.85785 0.79278 0.80508 0.77872 1.19517 1.20292 1.19500 1.19969 1.07693 0.94288 0.97173 0.89782 0.90217 0.89184 0.77873 0.82770 0.90109 0.90202 0.87003 0.87157 0.87738 0.87320 0.85502 0.91990 0.86630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.51 10.21 36.01 0.37 -0.14 16 2 C 0.00 -0.04 7.32 -35.62 -0.26 -0.30 16 3 O -0.17 -1.73 10.65 5.72 0.06 -1.67 16 4 C -0.05 -0.42 12.09 29.41 0.36 -0.06 16 5 C -0.18 -1.85 10.28 -39.70 -0.41 -2.26 16 6 C -0.19 -2.03 6.12 -104.74 -0.64 -2.67 16 7 C 0.14 1.67 5.51 36.01 0.20 1.87 16 8 O -0.36 -4.68 9.66 -39.24 -0.38 -5.06 16 9 C 0.46 6.95 7.95 36.01 0.29 7.23 16 10 O -0.49 -9.16 15.78 -18.75 -0.30 -9.46 16 11 C -0.06 -0.85 5.94 -29.04 -0.17 -1.02 16 12 C -0.04 -0.80 4.37 -104.65 -0.46 -1.26 16 13 C -0.19 -3.45 9.70 -39.54 -0.38 -3.83 16 14 C -0.07 -1.40 10.04 -39.61 -0.40 -1.80 16 15 C -0.23 -5.06 9.17 -39.40 -0.36 -5.42 16 16 C 0.15 3.81 6.65 -39.11 -0.26 3.55 16 17 O -0.18 -5.17 9.76 0.01 0.00 -5.17 16 18 C -0.39 -11.09 9.49 30.88 0.29 -10.80 16 19 H 0.09 2.36 5.20 -52.49 -0.27 2.09 16 20 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 21 N -0.86 -25.58 13.67 55.48 0.76 -24.82 16 22 Si 0.94 20.69 29.55 -169.99 -5.02 15.67 16 23 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 24 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 25 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 26 C -0.17 -3.72 9.65 -39.40 -0.38 -4.10 16 27 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.09 0.54 7.87 -51.93 -0.41 0.13 16 30 H 0.20 0.91 8.06 -52.49 -0.42 0.49 16 31 H 0.15 1.40 7.99 -52.49 -0.42 0.99 16 32 H 0.08 0.95 8.13 -51.93 -0.42 0.52 16 33 H 0.08 0.89 8.13 -51.93 -0.42 0.47 16 34 H 0.11 1.31 8.08 -51.93 -0.42 0.89 16 35 H 0.11 1.16 8.08 -51.93 -0.42 0.74 16 36 H 0.10 1.54 8.06 -52.48 -0.42 1.12 16 37 H 0.11 1.71 8.06 -52.48 -0.42 1.29 16 38 H 0.13 2.80 5.64 -52.49 -0.30 2.50 16 39 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 40 H 0.12 2.41 8.06 -52.49 -0.42 1.99 16 LS Contribution 356.34 15.07 5.37 5.37 Total: -1.00 -34.59 356.34 -6.58 -41.17 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -4.75 Total: 4.00 kcal Atomic # 6 Polarization: -17.71 SS G_CDS: -2.32 Total: -20.03 kcal Atomic # 7 Polarization: -25.58 SS G_CDS: 0.76 Total: -24.82 kcal Atomic # 8 Polarization: -20.74 SS G_CDS: -0.61 Total: -21.36 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -34.59 -6.58 -41.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000788189447.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.615 kcal (2) G-P(sol) polarization free energy of solvation -34.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds