Wall clock time and date at job start Tue Mar 31 2020 11:10:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.34300 * 125.79306 * 2 1 4 4 C 1.34303 * 109.47973 * 180.23720 * 3 2 1 5 5 C 1.34512 * 108.41941 * 359.77313 * 4 3 2 6 6 C 1.34513 * 125.78947 * 179.83824 * 2 1 3 7 7 C 1.50704 * 126.57821 * 0.03354 * 6 2 1 8 8 O 1.45205 * 109.47181 * 179.71245 * 7 6 2 9 9 C 1.34223 * 116.99935 * 179.97438 * 8 7 6 10 10 O 1.20826 * 120.00436 * 0.02562 * 9 8 7 11 11 C 1.50703 * 119.99861 * 179.72349 * 9 8 7 12 12 C 1.50695 * 109.47439 * 180.27641 * 11 9 8 13 13 C 1.38320 * 119.96930 * 269.72988 * 12 11 9 14 14 C 1.38275 * 120.14137 * 179.76310 * 13 12 11 15 15 C 1.38121 * 120.06802 * 0.50871 * 14 13 12 16 16 C 1.38851 * 119.92958 * 359.74573 * 15 14 13 17 17 O 1.35757 * 120.07035 * 179.97438 * 16 15 14 18 18 C 1.34835 * 116.99568 * 354.48557 * 17 16 15 19 19 H 1.07997 * 119.99929 * 5.05388 * 18 17 16 20 20 C 1.38648 * 119.99641 * 185.05950 * 18 17 16 21 21 N 1.31558 * 120.00544 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00011 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47354 * 59.99549 * 22 20 18 24 24 H 1.48501 * 109.47589 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.46962 * 299.99840 * 22 20 18 26 26 C 1.38079 * 119.96679 * 89.99801 * 12 11 9 27 27 H 1.08998 * 109.47166 * 270.16064 * 1 2 3 28 28 H 1.09000 * 109.47136 * 30.16439 * 1 2 3 29 29 H 1.09007 * 109.47027 * 150.16270 * 1 2 3 30 30 H 1.08001 * 125.79053 * 179.74530 * 4 3 2 31 31 H 1.08001 * 126.57976 * 179.97438 * 5 4 3 32 32 H 1.09002 * 109.46928 * 59.71769 * 7 6 2 33 33 H 1.08995 * 109.47323 * 299.71494 * 7 6 2 34 34 H 1.09000 * 109.47174 * 300.27883 * 11 9 8 35 35 H 1.08996 * 109.47148 * 60.27640 * 11 9 8 36 36 H 1.08006 * 119.92616 * 359.97438 * 13 12 11 37 37 H 1.08005 * 119.96670 * 180.24931 * 14 13 12 38 38 H 1.08001 * 120.03252 * 179.76515 * 15 14 13 39 39 H 0.96998 * 120.00549 * 180.02562 * 21 20 18 40 40 H 1.08000 * 120.03527 * 359.96214 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2925 1.0894 0.0000 4 6 3.5814 0.7121 -0.0052 5 6 3.6309 -0.6321 -0.0036 6 6 2.2936 -1.0911 0.0031 7 6 1.8372 -2.5274 0.0064 8 8 2.9952 -3.4033 0.0023 9 6 2.7597 -4.7247 0.0051 10 8 1.6236 -5.1360 0.0104 11 6 3.9124 -5.6955 -0.0052 12 6 3.3814 -7.1059 -0.0064 13 6 3.1507 -7.7583 1.1912 14 6 2.6589 -9.0507 1.1943 15 6 2.4064 -9.6979 0.0005 16 6 2.6419 -9.0475 -1.2035 17 8 2.3952 -9.6811 -2.3785 18 6 2.0319 -10.9778 -2.3102 19 1 1.8693 -11.4431 -1.3492 20 6 1.8671 -11.7137 -3.4736 21 7 2.0648 -11.1468 -4.6442 22 14 1.3631 -13.5099 -3.3790 23 1 0.0492 -13.6201 -2.6957 24 1 1.2548 -14.0667 -4.7515 25 1 2.3838 -14.2709 -2.6147 26 6 3.1309 -7.7475 -1.2032 27 1 -0.3633 0.0029 1.0276 28 1 -0.3633 0.8885 -0.5164 29 1 -0.3633 -0.8915 -0.5113 30 1 4.4337 1.3755 -0.0104 31 1 4.5212 -1.2434 -0.0071 32 1 1.2336 -2.7188 -0.8809 33 1 1.2412 -2.7171 0.8991 34 1 4.5157 -5.5337 -0.8984 35 1 4.5268 -5.5395 0.8815 36 1 3.3519 -7.2561 2.1259 37 1 2.4760 -9.5561 2.1311 38 1 2.0259 -10.7086 0.0035 39 1 1.9491 -11.6616 -5.4582 40 1 3.3147 -7.2389 -2.1380 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000788189447.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:52 Heat of formation + Delta-G solvation = -95.126421 kcal Electronic energy + Delta-G solvation = -24521.490988 eV Core-core repulsion = 20654.205999 eV Total energy + Delta-G solvation = -3867.284989 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.119 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.59441 -41.64065 -40.67369 -38.51581 -37.56378 -34.84293 -34.35435 -33.59117 -32.78730 -30.96533 -29.64605 -28.37218 -27.28040 -26.47747 -23.57294 -23.18109 -22.39414 -21.57304 -20.84700 -19.50363 -18.82118 -18.65550 -18.21176 -17.80254 -17.10999 -16.89924 -16.70754 -16.34550 -16.11414 -15.50567 -15.35824 -15.20508 -14.73527 -14.44939 -14.29691 -14.14043 -14.02257 -13.80270 -13.61114 -13.60067 -13.03896 -12.94926 -12.93783 -12.69647 -12.49874 -12.42171 -12.24674 -12.14124 -12.08212 -11.59577 -11.22036 -10.80101 -10.62957 -9.70739 -9.31887 -9.00770 -8.47056 -6.15883 0.41634 0.72214 0.73124 1.18095 1.34418 1.44945 1.51021 1.56199 1.63640 2.10404 2.17809 2.83067 3.15415 3.39591 3.62633 3.75328 3.80518 3.92722 4.07961 4.09022 4.19522 4.29571 4.35603 4.38535 4.39913 4.54464 4.60374 4.65379 4.72346 4.81988 4.83674 5.00067 5.05675 5.11792 5.25603 5.28259 5.38990 5.51056 5.61776 5.69559 5.72350 6.01940 6.13494 6.20493 6.72825 6.97301 7.78170 8.76188 Molecular weight = 316.12amu Principal moments of inertia in cm(-1) A = 0.024056 B = 0.002230 C = 0.002152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.663962 B =12555.584312 C =13010.293845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.008 4.008 3 O -0.183 6.183 4 C -0.040 4.040 5 C -0.209 4.209 6 C -0.210 4.210 7 C 0.142 3.858 8 O -0.349 6.349 9 C 0.468 3.532 10 O -0.533 6.533 11 C -0.061 4.061 12 C -0.037 4.037 13 C -0.176 4.176 14 C -0.073 4.073 15 C -0.242 4.242 16 C 0.111 3.889 17 O -0.233 6.233 18 C -0.415 4.415 19 H 0.102 0.898 20 C -0.024 4.024 21 N -0.922 5.922 22 Si 1.020 2.980 23 H -0.258 1.258 24 H -0.271 1.271 25 H -0.255 1.255 26 C -0.189 4.189 27 H 0.097 0.903 28 H 0.092 0.908 29 H 0.091 0.909 30 H 0.241 0.759 31 H 0.160 0.840 32 H 0.075 0.925 33 H 0.084 0.916 34 H 0.132 0.868 35 H 0.156 0.844 36 H 0.151 0.849 37 H 0.148 0.852 38 H 0.120 0.880 39 H 0.273 0.727 40 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.117 21.465 13.453 25.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.059 4.059 3 O -0.080 6.080 4 C -0.106 4.106 5 C -0.228 4.228 6 C -0.212 4.212 7 C 0.068 3.932 8 O -0.265 6.265 9 C 0.312 3.688 10 O -0.422 6.422 11 C -0.097 4.097 12 C -0.037 4.037 13 C -0.194 4.194 14 C -0.090 4.090 15 C -0.261 4.261 16 C 0.061 3.939 17 O -0.140 6.140 18 C -0.491 4.491 19 H 0.119 0.881 20 C -0.221 4.221 21 N -0.560 5.560 22 Si 0.838 3.162 23 H -0.183 1.183 24 H -0.196 1.196 25 H -0.180 1.180 26 C -0.209 4.209 27 H 0.116 0.884 28 H 0.111 0.889 29 H 0.110 0.890 30 H 0.258 0.742 31 H 0.177 0.823 32 H 0.093 0.907 33 H 0.102 0.898 34 H 0.150 0.850 35 H 0.174 0.826 36 H 0.169 0.831 37 H 0.166 0.834 38 H 0.137 0.863 39 H 0.082 0.918 40 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 2.651 21.707 13.005 25.443 hybrid contribution -0.348 -1.152 -0.586 1.339 sum 2.303 20.555 12.419 24.125 Atomic orbital electron populations 1.20518 0.83053 1.05138 1.04889 1.22508 0.95084 0.83111 1.05168 1.84050 1.17718 1.34526 1.71701 1.24719 0.84407 0.96185 1.05283 1.21879 0.97591 0.95361 1.07977 1.19978 0.95163 0.93800 1.12225 1.21027 0.85520 0.83927 1.02693 1.86441 1.38684 1.17358 1.84040 1.24066 0.91216 0.82043 0.71508 1.90723 1.25947 1.79465 1.46054 1.20379 0.94031 0.86009 1.09301 1.19115 0.98138 0.94367 0.92126 1.21013 1.05317 0.95529 0.97584 1.21151 0.95970 0.94969 0.96956 1.21343 1.09990 1.02044 0.92730 1.19861 0.94053 0.93306 0.86678 1.83942 1.77208 1.25776 1.27115 1.21794 1.47728 0.84004 0.95551 0.88107 1.26615 0.96695 1.05392 0.93430 1.70182 1.48217 1.39273 0.98374 0.84640 0.79438 0.73746 0.78331 1.18282 1.19584 1.17957 1.20236 1.08266 0.93599 0.98756 0.88438 0.88939 0.88997 0.74249 0.82262 0.90722 0.89836 0.84976 0.82642 0.83136 0.83431 0.86263 0.91836 0.87330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.94 10.21 71.24 0.73 -0.21 16 2 C -0.01 -0.15 7.32 24.83 0.18 0.03 16 3 O -0.18 -3.33 10.65 -2.46 -0.03 -3.35 16 4 C -0.04 -0.58 12.09 66.97 0.81 0.23 16 5 C -0.21 -3.86 10.28 22.19 0.23 -3.63 16 6 C -0.21 -4.38 6.12 -19.94 -0.12 -4.50 16 7 C 0.14 3.23 5.51 71.24 0.39 3.62 16 8 O -0.35 -8.53 9.66 -51.35 -0.50 -9.03 16 9 C 0.47 13.15 7.95 71.24 0.57 13.72 16 10 O -0.53 -19.52 15.78 21.96 0.35 -19.18 16 11 C -0.06 -1.43 5.94 29.10 0.17 -1.26 16 12 C -0.04 -1.26 4.37 -19.88 -0.09 -1.35 16 13 C -0.18 -5.53 9.70 22.30 0.22 -5.32 16 14 C -0.07 -2.54 10.04 22.25 0.22 -2.32 16 15 C -0.24 -10.87 9.17 22.39 0.21 -10.66 16 16 C 0.11 5.74 6.65 22.57 0.15 5.89 16 17 O -0.23 -14.50 9.76 -22.87 -0.22 -14.73 16 18 C -0.41 -24.75 9.49 67.92 0.64 -24.11 16 19 H 0.10 5.51 5.20 -2.91 -0.02 5.49 16 20 C -0.02 -1.40 5.49 84.83 0.47 -0.93 16 21 N -0.92 -57.72 13.67 21.61 0.30 -57.42 16 22 Si 1.02 43.57 29.55 68.60 2.03 45.60 16 23 H -0.26 -10.41 7.11 99.48 0.71 -9.71 16 24 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 25 H -0.26 -10.17 7.11 99.48 0.71 -9.47 16 26 C -0.19 -8.36 9.65 22.39 0.22 -8.14 16 27 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.09 1.04 7.87 -2.38 -0.02 1.02 16 30 H 0.24 1.34 8.06 -2.91 -0.02 1.32 16 31 H 0.16 2.63 7.99 -2.91 -0.02 2.61 16 32 H 0.07 1.76 8.13 -2.39 -0.02 1.74 16 33 H 0.08 1.81 8.13 -2.39 -0.02 1.79 16 34 H 0.13 2.68 8.08 -2.39 -0.02 2.66 16 35 H 0.16 2.35 8.08 -2.39 -0.02 2.33 16 36 H 0.15 3.45 8.06 -2.91 -0.02 3.43 16 37 H 0.15 4.00 8.06 -2.91 -0.02 3.98 16 38 H 0.12 5.41 5.64 -2.91 -0.02 5.39 16 39 H 0.27 15.63 8.31 -92.71 -0.77 14.85 16 40 H 0.11 4.78 8.06 -2.91 -0.02 4.76 16 Total: -1.00 -81.55 356.34 7.98 -73.57 By element: Atomic # 1 Polarization: 22.40 SS G_CDS: 1.07 Total: 23.47 kcal Atomic # 6 Polarization: -43.92 SS G_CDS: 4.99 Total: -38.93 kcal Atomic # 7 Polarization: -57.72 SS G_CDS: 0.30 Total: -57.42 kcal Atomic # 8 Polarization: -45.88 SS G_CDS: -0.40 Total: -46.28 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Total: -81.55 7.98 -73.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000788189447.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.555 kcal (2) G-P(sol) polarization free energy of solvation -81.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds