Wall clock time and date at job start Tue Mar 31 2020 11:24:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.46840 * 2 1 4 4 H 1.09001 * 109.47064 * 304.99774 * 3 2 1 5 5 C 1.53001 * 109.47157 * 185.00069 * 3 2 1 6 6 C 1.50703 * 109.47274 * 64.99499 * 5 3 2 7 7 C 1.38226 * 119.99935 * 269.72706 * 6 5 3 8 8 C 1.38238 * 119.99630 * 179.74373 * 7 6 5 9 9 C 1.38231 * 120.00077 * 0.55105 * 8 7 6 10 10 C 1.50705 * 119.99975 * 179.72410 * 9 8 7 11 11 F 1.39901 * 109.47037 * 269.97750 * 10 9 8 12 12 F 1.39897 * 109.47199 * 29.97954 * 10 9 8 13 13 F 1.39901 * 109.47157 * 149.98165 * 10 9 8 14 14 C 1.38235 * 119.99798 * 359.70420 * 9 8 7 15 15 C 1.38227 * 120.00245 * 0.02562 * 14 9 8 16 16 C 1.50702 * 109.47412 * 64.99619 * 3 2 1 17 17 O 1.21207 * 119.99714 * 119.72616 * 16 3 2 18 18 O 1.34314 * 119.99951 * 300.00315 * 16 3 2 19 19 C 1.34921 * 116.99938 * 179.72575 * 18 16 3 20 20 H 1.07996 * 119.99717 * 359.97438 * 19 18 16 21 21 C 1.38744 * 120.00031 * 179.97438 * 19 18 16 22 22 N 1.31446 * 120.00294 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00387 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.46888 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.47088 * 119.99986 * 23 21 19 26 26 H 1.48491 * 109.47632 * 240.00446 * 23 21 19 27 27 H 1.08999 * 109.47488 * 299.99961 * 1 2 3 28 28 H 1.09001 * 109.47314 * 60.00842 * 1 2 3 29 29 H 1.09001 * 109.47250 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47488 * 240.00039 * 2 1 3 31 31 H 1.09001 * 109.47314 * 119.99158 * 2 1 3 32 32 H 1.09005 * 109.46618 * 184.99871 * 5 3 2 33 33 H 1.09000 * 109.47026 * 304.99345 * 5 3 2 34 34 H 1.07998 * 120.00423 * 0.02562 * 7 6 5 35 35 H 1.08004 * 119.99705 * 180.27495 * 8 7 6 36 36 H 1.08001 * 119.99952 * 179.97438 * 14 9 8 37 37 H 1.08001 * 120.00564 * 179.97438 * 15 14 9 38 38 H 0.96993 * 120.00267 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5647 1.4445 -0.1257 6 6 3.9589 0.8822 -1.4672 7 6 4.1855 -0.4740 -1.6086 8 6 4.5419 -0.9905 -2.8403 9 6 4.6828 -0.1491 -3.9280 10 6 5.0774 -0.7113 -5.2694 11 9 6.4717 -0.7092 -5.3841 12 9 4.6021 -2.0221 -5.3838 13 9 4.5248 0.0755 -6.2857 14 6 4.4613 1.2079 -3.7854 15 6 4.0995 1.7236 -2.5550 16 6 1.6411 2.1164 1.2876 17 8 2.4924 2.5502 2.0335 18 8 0.3427 2.2312 1.6114 19 6 0.0544 2.8399 2.7805 20 1 0.8521 3.2083 3.4085 21 6 -1.2667 2.9924 3.1760 22 7 -2.2376 2.5444 2.4114 23 14 -1.6658 3.8344 4.7950 24 1 -0.4049 4.2448 5.4635 25 1 -2.5014 5.0344 4.5360 26 1 -2.4084 2.8941 5.6722 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5137 -0.8901 29 1 -0.3634 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5137 0.8901 32 1 3.9353 2.4657 -0.0366 33 1 3.9954 0.8314 0.6660 34 1 4.0797 -1.1308 -0.7578 35 1 4.7147 -2.0508 -2.9518 36 1 4.5717 1.8653 -4.6351 37 1 3.9268 2.7839 -2.4434 38 1 -3.1611 2.6514 2.6877 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000792512713.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:09 Heat of formation + Delta-G solvation = -225.330755 kcal Electronic energy + Delta-G solvation = -25997.933882 eV Core-core repulsion = 21583.146069 eV Total energy + Delta-G solvation = -4414.787813 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.107 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.35732 -47.87388 -47.82285 -40.01679 -39.06051 -35.96502 -34.80453 -32.60817 -32.04934 -31.30467 -29.32002 -26.51420 -25.32794 -23.69488 -23.23803 -21.95591 -21.26522 -19.26289 -18.69592 -18.62823 -18.54085 -17.76815 -16.87953 -15.58173 -15.48912 -15.23019 -14.82195 -14.68407 -14.61437 -14.49654 -14.36977 -14.28583 -14.08288 -13.98401 -13.70045 -13.60820 -13.14234 -12.92240 -12.71238 -12.60577 -12.19963 -11.71739 -11.61057 -11.34379 -11.21679 -11.11361 -10.83927 -10.64558 -10.43233 -10.35736 -10.20181 -9.67383 -9.25382 -9.11523 -8.93404 -8.58864 -6.43091 -4.10405 0.73139 1.08490 2.46791 3.07929 3.17702 3.23932 3.28273 3.50590 3.52591 3.82896 3.91529 4.22883 4.41182 4.59808 4.64505 4.90184 5.03090 5.10652 5.14255 5.19051 5.30774 5.46288 5.55341 5.64077 5.80378 5.95276 5.96732 6.00636 6.04077 6.22189 6.29370 6.44579 6.48725 6.60454 6.60928 6.75518 7.32677 7.41857 7.94715 8.69638 9.06741 9.84129 10.74540 Molecular weight = 316.11amu Principal moments of inertia in cm(-1) A = 0.032886 B = 0.002600 C = 0.002543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.232985 B =10767.626838 C =11007.801866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.112 4.112 3 C -0.066 4.066 4 H 0.095 0.905 5 C -0.071 4.071 6 C -0.035 4.035 7 C -0.116 4.116 8 C -0.070 4.070 9 C -0.195 4.195 10 C 0.509 3.491 11 F -0.179 7.179 12 F -0.179 7.179 13 F -0.179 7.179 14 C -0.068 4.068 15 C -0.118 4.118 16 C 0.402 3.598 17 O -0.558 6.558 18 O -0.205 6.205 19 C -0.385 4.385 20 H 0.095 0.905 21 C 0.043 3.957 22 N -0.863 5.863 23 Si 0.939 3.061 24 H -0.266 1.266 25 H -0.277 1.277 26 H -0.277 1.277 27 H 0.099 0.901 28 H 0.049 0.951 29 H 0.044 0.956 30 H 0.066 0.934 31 H 0.062 0.938 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.137 0.863 35 H 0.134 0.866 36 H 0.134 0.866 37 H 0.136 0.864 38 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.964 -6.858 -13.507 19.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.150 4.150 3 C -0.085 4.085 4 H 0.113 0.887 5 C -0.108 4.108 6 C -0.035 4.035 7 C -0.134 4.134 8 C -0.088 4.088 9 C -0.197 4.197 10 C 0.455 3.545 11 F -0.161 7.161 12 F -0.160 7.160 13 F -0.160 7.160 14 C -0.087 4.087 15 C -0.135 4.135 16 C 0.248 3.752 17 O -0.455 6.455 18 O -0.112 6.112 19 C -0.461 4.461 20 H 0.112 0.888 21 C -0.161 4.161 22 N -0.500 5.500 23 Si 0.764 3.236 24 H -0.190 1.190 25 H -0.202 1.202 26 H -0.202 1.202 27 H 0.118 0.882 28 H 0.068 0.932 29 H 0.063 0.937 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.105 0.895 33 H 0.103 0.897 34 H 0.155 0.845 35 H 0.152 0.848 36 H 0.152 0.848 37 H 0.154 0.846 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 11.933 -6.771 -13.345 19.140 hybrid contribution -0.194 0.306 0.424 0.557 sum 11.739 -6.465 -12.921 18.616 Atomic orbital electron populations 1.22013 0.94002 1.01104 1.05070 1.21552 0.97832 0.93894 1.01707 1.20820 0.94534 0.97621 0.95552 0.88693 1.20561 0.94748 1.02918 0.92594 1.20260 0.93825 0.93527 0.95884 1.21144 0.99853 0.95086 0.97291 1.20908 0.96448 0.99685 0.91726 1.19899 1.11192 0.96078 0.92482 1.18346 0.74717 0.75628 0.85789 1.93218 1.29937 1.96283 1.96625 1.93184 1.88214 1.38004 1.96587 1.93186 1.85432 1.74357 1.63018 1.20904 0.96175 0.93141 0.98432 1.21136 1.00103 1.00693 0.91612 1.23047 0.82920 0.81039 0.88156 1.90552 1.51899 1.50239 1.52842 1.83916 1.23644 1.65033 1.38613 1.21280 0.93031 1.36446 0.95323 0.88783 1.25282 0.94338 0.97082 0.99364 1.69982 0.99731 1.43472 1.36847 0.85667 0.78892 0.78719 0.80314 1.19030 1.20237 1.20223 0.88242 0.93209 0.93726 0.91574 0.91938 0.89473 0.89705 0.84541 0.84843 0.84843 0.84577 0.92164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.94 9.55 37.16 0.35 -2.59 16 2 C -0.11 -1.74 5.12 -26.73 -0.14 -1.88 16 3 C -0.07 -1.12 2.31 -91.77 -0.21 -1.33 16 4 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 5 C -0.07 -1.00 4.19 -27.88 -0.12 -1.11 16 6 C -0.03 -0.40 4.71 -104.62 -0.49 -0.90 16 7 C -0.12 -1.21 7.89 -39.59 -0.31 -1.52 16 8 C -0.07 -0.69 9.40 -39.58 -0.37 -1.06 16 9 C -0.20 -2.03 5.45 -104.62 -0.57 -2.60 16 10 C 0.51 5.23 3.36 36.01 0.12 5.35 16 11 F -0.18 -1.90 17.30 2.25 0.04 -1.86 16 12 F -0.18 -1.87 16.46 2.25 0.04 -1.84 16 13 F -0.18 -1.88 16.46 2.25 0.04 -1.85 16 14 C -0.07 -0.69 9.40 -39.59 -0.37 -1.06 16 15 C -0.12 -1.25 9.70 -39.59 -0.38 -1.64 16 16 C 0.40 9.34 7.18 36.01 0.26 9.60 16 17 O -0.56 -14.25 15.16 -19.05 -0.29 -14.54 16 18 O -0.21 -5.51 6.89 -20.72 -0.14 -5.66 16 19 C -0.38 -10.97 9.64 30.92 0.30 -10.68 16 20 H 0.09 2.74 6.86 -52.49 -0.36 2.38 16 21 C 0.04 1.19 5.49 -17.53 -0.10 1.09 16 22 N -0.86 -24.35 13.67 55.48 0.76 -23.59 16 23 Si 0.94 20.86 29.55 -169.99 -5.02 15.84 16 24 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 25 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 26 H -0.28 -5.97 7.11 56.52 0.40 -5.56 16 27 H 0.10 2.25 5.46 -51.93 -0.28 1.96 16 28 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 29 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.07 0.86 5.94 -51.93 -0.31 0.55 16 31 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.09 1.27 7.90 -51.93 -0.41 0.86 16 33 H 0.08 1.20 8.08 -51.93 -0.42 0.78 16 34 H 0.14 1.24 8.01 -52.49 -0.42 0.82 16 35 H 0.13 1.08 7.60 -52.48 -0.40 0.69 16 36 H 0.13 1.11 7.61 -52.49 -0.40 0.71 16 37 H 0.14 1.28 8.06 -52.49 -0.42 0.85 16 38 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 336.61 15.07 5.07 5.07 Total: -1.00 -30.92 336.61 -5.79 -36.71 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: -4.25 Total: 2.02 kcal Atomic # 6 Polarization: -8.28 SS G_CDS: -2.03 Total: -10.32 kcal Atomic # 7 Polarization: -24.35 SS G_CDS: 0.76 Total: -23.59 kcal Atomic # 8 Polarization: -19.76 SS G_CDS: -0.43 Total: -20.19 kcal Atomic # 9 Polarization: -5.66 SS G_CDS: 0.11 Total: -5.55 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -30.92 -5.79 -36.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000792512713.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -188.620 kcal (2) G-P(sol) polarization free energy of solvation -30.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -219.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -225.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds