Wall clock time and date at job start Tue Mar 31 2020 11:15:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34163 * 127.02757 * 2 1 4 4 O 1.34213 * 109.14521 * 180.30743 * 3 2 1 5 5 C 1.33623 * 110.92637 * 359.70730 * 4 3 2 6 6 C 1.50707 * 125.81022 * 179.97438 * 5 4 3 7 7 C 1.36503 * 108.38468 * 0.02562 * 5 4 3 8 8 C 1.47227 * 127.20179 * 180.02562 * 7 5 4 9 9 O 1.21531 * 120.00457 * 90.02517 * 8 7 5 10 10 O 1.34773 * 119.99643 * 270.01801 * 8 7 5 11 11 C 1.45203 * 116.99921 * 180.02562 * 10 8 7 12 12 C 1.50701 * 109.47367 * 180.02562 * 11 10 8 13 13 C 1.38299 * 119.93217 * 269.73145 * 12 11 10 14 14 C 1.38093 * 120.06953 * 179.72477 * 13 12 11 15 15 C 1.38883 * 119.92808 * 0.56550 * 14 13 12 16 16 O 1.35754 * 120.06438 * 179.68623 * 15 14 13 17 17 C 1.34826 * 116.99724 * 174.49160 * 16 15 14 18 18 H 1.07998 * 120.00100 * 5.04739 * 17 16 15 19 19 C 1.38654 * 119.99970 * 185.05457 * 17 16 15 20 20 N 1.31557 * 120.00012 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99959 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.46896 * 90.00233 * 21 19 17 23 23 H 1.48505 * 109.47024 * 209.99798 * 21 19 17 24 24 H 1.48496 * 109.47185 * 330.00029 * 21 19 17 25 25 C 1.38871 * 119.86468 * 359.70509 * 15 14 13 26 26 C 1.38101 * 119.93230 * 0.02562 * 25 15 14 27 27 H 1.09002 * 109.46970 * 270.15389 * 1 2 3 28 28 H 1.08995 * 109.46889 * 30.14914 * 1 2 3 29 29 H 1.08998 * 109.47077 * 150.15393 * 1 2 3 30 30 H 1.08005 * 125.42584 * 0.02562 * 3 2 1 31 31 H 1.09000 * 109.47102 * 270.00402 * 6 5 4 32 32 H 1.09001 * 109.46550 * 30.00621 * 6 5 4 33 33 H 1.09000 * 109.46774 * 150.00507 * 6 5 4 34 34 H 1.09002 * 109.46793 * 60.00085 * 11 10 8 35 35 H 1.09001 * 109.47022 * 300.00649 * 11 10 8 36 36 H 1.08005 * 119.96050 * 359.97425 * 13 12 11 37 37 H 1.07999 * 120.03730 * 180.26989 * 14 13 12 38 38 H 0.97002 * 120.00021 * 179.97438 * 20 19 17 39 39 H 1.08002 * 120.03853 * 179.97438 * 25 15 14 40 40 H 1.07997 * 119.96732 * 179.97438 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3149 1.0711 0.0000 4 8 3.5922 0.6590 -0.0068 5 6 3.6632 -0.6754 -0.0050 6 6 4.9305 -1.4910 -0.0117 7 6 2.3925 -1.1741 0.0026 8 6 1.9924 -2.5909 0.0076 9 8 1.8323 -3.1735 1.0621 10 8 1.8035 -3.2418 -1.1573 11 6 1.4092 -4.6369 -1.0765 12 6 1.2464 -5.1944 -2.4671 13 6 0.0172 -5.1284 -3.0976 14 6 -0.1337 -5.6332 -4.3740 15 6 0.9476 -6.2182 -5.0202 16 8 0.8008 -6.7210 -6.2725 17 6 1.9140 -7.1709 -6.8859 18 1 2.8520 -7.1970 -6.3513 19 6 1.8545 -7.5998 -8.2031 20 7 0.7118 -7.5684 -8.8542 21 14 3.3971 -8.2224 -9.0531 22 1 3.5215 -9.6870 -8.8423 23 1 3.3098 -7.9374 -10.5080 24 1 4.5860 -7.5377 -8.4850 25 6 2.1792 -6.2879 -4.3823 26 6 2.3252 -5.7763 -3.1079 27 1 -0.3633 0.0028 1.0277 28 1 -0.3633 0.8886 -0.5161 29 1 -0.3633 -0.8913 -0.5114 30 1 1.9893 2.1009 0.0004 31 1 5.2295 -1.6893 -1.0409 32 1 5.7208 -0.9384 0.4964 33 1 4.7575 -2.4352 0.5048 34 1 0.4638 -4.7168 -0.5397 35 1 2.1766 -5.2013 -0.5467 36 1 -0.8245 -4.6780 -2.5925 37 1 -1.0927 -5.5775 -4.8675 38 1 0.6703 -7.8681 -9.7758 39 1 3.0219 -6.7426 -4.8820 40 1 3.2826 -5.8306 -2.6112 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000792758502.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:06 Heat of formation + Delta-G solvation = -96.761617 kcal Electronic energy + Delta-G solvation = -24819.321904 eV Core-core repulsion = 20951.966008 eV Total energy + Delta-G solvation = -3867.355897 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.119 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.63088 -41.41461 -40.75138 -38.58810 -37.34080 -35.04525 -34.37708 -33.59775 -32.14025 -31.84530 -29.33972 -27.95760 -27.51049 -26.61131 -24.65893 -23.71065 -22.23213 -21.43953 -20.80088 -19.91770 -19.03740 -18.94977 -18.22885 -17.38320 -17.26364 -16.86645 -16.38041 -16.26425 -15.87503 -15.58202 -15.29434 -14.88734 -14.79620 -14.45841 -14.26410 -14.18413 -14.03700 -13.82716 -13.78521 -13.63003 -13.50660 -13.34359 -13.06292 -12.66802 -12.46544 -12.38151 -12.30690 -12.12778 -11.84968 -11.75746 -11.22169 -10.82915 -10.58802 -9.86182 -9.52060 -9.08464 -8.49854 -6.18436 0.32063 0.53658 0.56636 0.87164 1.13071 1.35801 1.43917 1.53275 1.69042 2.02465 2.16591 2.80598 3.12501 3.43712 3.44056 3.64806 3.81160 3.86995 3.89922 4.12112 4.13684 4.26203 4.29308 4.36183 4.52249 4.54350 4.56046 4.68310 4.71589 4.72940 4.93728 4.94597 4.96449 5.10601 5.11832 5.19950 5.24276 5.40367 5.48150 5.63863 5.66227 5.97314 5.99035 6.09473 6.56201 6.94593 7.72191 8.72902 Molecular weight = 316.12amu Principal moments of inertia in cm(-1) A = 0.018746 B = 0.002531 C = 0.002443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.278717 B =11060.478754 C =11458.854595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.168 4.168 3 C -0.024 4.024 4 O -0.172 6.172 5 C 0.058 3.942 6 C -0.086 4.086 7 C -0.255 4.255 8 C 0.551 3.449 9 O -0.525 6.525 10 O -0.350 6.350 11 C 0.127 3.873 12 C -0.183 4.183 13 C -0.042 4.042 14 C -0.206 4.206 15 C 0.127 3.873 16 O -0.226 6.226 17 C -0.416 4.416 18 H 0.105 0.895 19 C -0.021 4.021 20 N -0.918 5.918 21 Si 1.019 2.981 22 H -0.263 1.263 23 H -0.272 1.272 24 H -0.252 1.252 25 C -0.244 4.244 26 C -0.042 4.042 27 H 0.078 0.922 28 H 0.098 0.902 29 H 0.051 0.949 30 H 0.253 0.747 31 H 0.103 0.897 32 H 0.109 0.891 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.148 0.852 37 H 0.120 0.880 38 H 0.274 0.726 39 H 0.126 0.874 40 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.219 15.774 18.500 25.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.170 4.170 3 C -0.089 4.089 4 O -0.068 6.068 5 C 0.006 3.994 6 C -0.142 4.142 7 C -0.257 4.257 8 C 0.395 3.605 9 O -0.415 6.415 10 O -0.267 6.267 11 C 0.055 3.945 12 C -0.184 4.184 13 C -0.060 4.060 14 C -0.225 4.225 15 C 0.076 3.924 16 O -0.131 6.131 17 C -0.492 4.492 18 H 0.122 0.878 19 C -0.219 4.219 20 N -0.556 5.556 21 Si 0.838 3.162 22 H -0.187 1.187 23 H -0.196 1.196 24 H -0.175 1.175 25 C -0.264 4.264 26 C -0.060 4.060 27 H 0.097 0.903 28 H 0.117 0.883 29 H 0.070 0.930 30 H 0.269 0.731 31 H 0.122 0.878 32 H 0.128 0.872 33 H 0.105 0.895 34 H 0.104 0.896 35 H 0.106 0.894 36 H 0.166 0.834 37 H 0.138 0.862 38 H 0.083 0.917 39 H 0.144 0.856 40 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 6.110 15.665 18.442 24.957 hybrid contribution -0.053 -0.816 -0.697 1.074 sum 6.057 14.849 17.746 23.918 Atomic orbital electron populations 1.20273 0.87355 1.03672 1.03064 1.21657 0.98002 0.89937 1.07387 1.24426 0.78330 1.00846 1.05282 1.83760 1.30556 1.21113 1.71356 1.22984 0.96124 0.81366 0.98954 1.20656 0.90523 0.97493 1.05509 1.20393 0.95313 0.90836 1.19167 1.20329 0.72287 0.86406 0.81499 1.90829 1.48293 1.69027 1.33367 1.86805 1.78456 1.27611 1.33788 1.21782 1.01722 0.76950 0.94089 1.19221 0.94610 1.07525 0.97053 1.20893 0.97523 0.95285 0.92274 1.20439 0.97980 1.06970 0.97103 1.19985 0.95039 0.91625 0.85774 1.83951 1.35761 1.69020 1.24412 1.21869 0.87902 1.43210 0.96221 0.87784 1.26613 1.02502 0.96881 0.95866 1.70180 1.27552 1.45957 1.11894 0.84582 0.75550 0.78846 0.77229 1.18744 1.19627 1.17510 1.21250 0.97686 1.09711 0.97718 1.20971 0.98536 0.93848 0.92603 0.90337 0.88292 0.92958 0.73144 0.87823 0.87193 0.89501 0.89626 0.89405 0.83420 0.86232 0.91706 0.85647 0.83858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.41 10.38 71.24 0.74 -0.67 16 2 C -0.17 -3.39 6.38 -18.48 -0.12 -3.51 16 3 C -0.02 -0.35 11.96 66.89 0.80 0.45 16 4 O -0.17 -3.15 10.52 4.75 0.05 -3.10 16 5 C 0.06 1.19 7.38 25.28 0.19 1.38 16 6 C -0.09 -1.22 10.24 71.24 0.73 -0.49 16 7 C -0.25 -6.35 6.20 -19.01 -0.12 -6.47 16 8 C 0.55 15.72 7.40 70.18 0.52 16.24 16 9 O -0.53 -16.89 16.90 19.73 0.33 -16.55 16 10 O -0.35 -10.32 10.22 -56.84 -0.58 -10.90 16 11 C 0.13 3.46 5.60 71.24 0.40 3.86 16 12 C -0.18 -5.92 5.52 -19.83 -0.11 -6.03 16 13 C -0.04 -1.42 9.69 22.25 0.22 -1.20 16 14 C -0.21 -8.65 9.99 22.39 0.22 -8.43 16 15 C 0.13 6.23 6.65 22.58 0.15 6.38 16 16 O -0.23 -13.37 9.76 -22.74 -0.22 -13.59 16 17 C -0.42 -23.80 9.49 67.92 0.64 -23.16 16 18 H 0.10 5.42 5.20 -2.91 -0.02 5.40 16 19 C -0.02 -1.15 5.49 84.83 0.47 -0.69 16 20 N -0.92 -55.65 13.67 21.61 0.30 -55.35 16 21 Si 1.02 41.97 29.55 68.60 2.03 44.00 16 22 H -0.26 -10.27 7.11 99.48 0.71 -9.57 16 23 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 24 H -0.25 -9.58 7.11 99.48 0.71 -8.87 16 25 C -0.24 -10.43 9.17 22.39 0.21 -10.22 16 26 C -0.04 -1.43 9.69 22.25 0.22 -1.21 16 27 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.25 1.22 8.06 -2.91 -0.02 1.19 16 31 H 0.10 1.30 8.14 -2.39 -0.02 1.29 16 32 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.09 1.31 7.93 -2.39 -0.02 1.29 16 34 H 0.09 2.14 8.08 -2.39 -0.02 2.12 16 35 H 0.09 2.15 8.08 -2.39 -0.02 2.13 16 36 H 0.15 3.98 8.06 -2.91 -0.02 3.95 16 37 H 0.12 4.92 8.06 -2.91 -0.02 4.90 16 38 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 39 H 0.13 5.36 5.64 -2.91 -0.02 5.35 16 40 H 0.14 3.92 8.06 -2.91 -0.02 3.90 16 Total: -1.00 -75.87 359.34 8.12 -67.74 By element: Atomic # 1 Polarization: 20.46 SS G_CDS: 1.07 Total: 21.53 kcal Atomic # 6 Polarization: -38.93 SS G_CDS: 5.15 Total: -33.78 kcal Atomic # 7 Polarization: -55.65 SS G_CDS: 0.30 Total: -55.35 kcal Atomic # 8 Polarization: -43.73 SS G_CDS: -0.42 Total: -44.15 kcal Atomic # 14 Polarization: 41.97 SS G_CDS: 2.03 Total: 44.00 kcal Total: -75.87 8.12 -67.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000792758502.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.018 kcal (2) G-P(sol) polarization free energy of solvation -75.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds