Wall clock time and date at job start Tue Mar 31 2020 10:57:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30878 * 1 3 3 Si 1.86803 * 120.00071 * 2 1 4 4 H 1.48498 * 109.47080 * 269.99991 * 3 2 1 5 5 H 1.48498 * 109.47162 * 30.00330 * 3 2 1 6 6 H 1.48503 * 109.46781 * 150.00249 * 3 2 1 7 7 C 1.39895 * 120.00138 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00469 * 175.60336 * 7 2 1 9 9 C 1.41163 * 119.99668 * 355.59405 * 7 2 1 10 10 C 1.40869 * 120.16389 * 214.77187 * 9 7 2 11 11 C 1.36372 * 119.82941 * 180.02562 * 10 9 7 12 12 C 1.39487 * 120.16659 * 359.97438 * 11 10 9 13 13 N 1.39244 * 119.82888 * 179.97438 * 12 11 10 14 14 C 1.34774 * 120.00109 * 35.31579 * 13 12 11 15 15 O 1.21580 * 120.00331 * 355.70845 * 14 13 12 16 16 N 1.34778 * 119.99698 * 175.70451 * 14 13 12 17 17 N 1.40096 * 120.00230 * 0.27887 * 16 14 13 18 18 C 1.38994 * 120.00111 * 179.72504 * 17 16 14 19 19 C 1.39066 * 119.68988 * 179.72570 * 18 17 16 20 20 C 1.38376 * 119.15619 * 179.73132 * 19 18 17 21 21 C 1.38759 * 118.53688 * 0.53103 * 20 19 18 22 22 C 1.38369 * 119.30247 * 359.72694 * 21 20 19 23 23 F 1.35098 * 119.60320 * 179.97438 * 22 21 20 24 24 N 1.32143 * 120.79302 * 0.02562 * 22 21 20 25 25 C 1.39480 * 120.33192 * 0.25127 * 12 11 10 26 26 C 1.36371 * 120.16741 * 359.48842 * 25 12 11 27 27 H 0.97003 * 119.99840 * 359.97438 * 1 2 3 28 28 H 1.07998 * 120.08549 * 359.97438 * 10 9 7 29 29 H 1.08001 * 119.91526 * 179.97438 * 11 10 9 30 30 H 0.97001 * 119.99506 * 215.31002 * 13 12 11 31 31 H 0.97001 * 119.99405 * 180.02562 * 16 14 13 32 32 H 0.96997 * 120.00144 * 359.71553 * 17 16 14 33 33 H 1.08003 * 120.42553 * 0.02562 * 19 18 17 34 34 H 1.08000 * 120.73449 * 180.26532 * 20 19 18 35 35 H 1.08004 * 120.34919 * 179.75588 * 21 20 19 36 36 H 1.07996 * 119.91170 * 179.74255 * 25 12 11 37 37 H 1.08003 * 120.08110 * 180.23199 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 2.4903 2.0464 -1.4001 5 1 1.4403 2.6527 0.7001 6 1 3.5404 1.4401 0.7000 7 6 2.0083 -1.2115 -0.0005 8 1 3.0859 -1.2129 -0.0722 9 6 1.3056 -2.4322 0.0928 10 6 1.8645 -3.5189 0.7936 11 6 1.1799 -4.6953 0.8790 12 6 -0.0709 -4.8238 0.2753 13 7 -0.7635 -6.0283 0.3665 14 6 -0.6818 -6.7693 1.4893 15 8 0.0571 -6.4262 2.3917 16 7 -1.4194 -7.8907 1.6118 17 7 -2.2666 -8.2892 0.5696 18 6 -3.0229 -9.4487 0.6936 19 6 -3.8661 -9.8352 -0.3426 20 6 -4.6098 -10.9945 -0.2098 21 6 -4.4937 -11.7258 0.9638 22 6 -3.6397 -11.2807 1.9573 23 9 -3.5223 -11.9877 3.1026 24 7 -2.9382 -10.1720 1.7998 25 6 -0.6287 -3.7537 -0.4242 26 6 0.0416 -2.5695 -0.5137 27 1 -0.4850 0.8401 0.0004 28 1 2.8331 -3.4210 1.2612 29 1 1.6074 -5.5294 1.4156 30 1 -1.3049 -6.3340 -0.3781 31 1 -1.3608 -8.4237 2.4200 32 1 -2.3255 -7.7559 -0.2385 33 1 -3.9360 -9.2407 -1.2415 34 1 -5.2694 -11.3208 -1.0003 35 1 -5.0637 -12.6330 1.1001 36 1 -1.5958 -3.8621 -0.8926 37 1 -0.3933 -1.7407 -1.0526 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000806171857.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:57:34 Heat of formation + Delta-G solvation = 43.086754 kcal Electronic energy + Delta-G solvation = -24220.714129 eV Core-core repulsion = 20300.547710 eV Total energy + Delta-G solvation = -3920.166419 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.108 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.29802 -40.74947 -39.94044 -37.58117 -36.38425 -34.54894 -33.07783 -32.80864 -32.07123 -29.61944 -28.96098 -28.48641 -25.08384 -23.94922 -23.52254 -22.00674 -21.17943 -20.10393 -19.23205 -18.76002 -17.66757 -17.31666 -16.58124 -16.49676 -16.40648 -15.94416 -15.42793 -15.34267 -15.07943 -14.58976 -14.14626 -13.99318 -13.89690 -13.51113 -13.11807 -12.72712 -12.69734 -12.20300 -11.96889 -11.72637 -11.40560 -11.19113 -11.06068 -10.77277 -10.36700 -10.30039 -10.13854 -9.69220 -9.56631 -9.50776 -9.30852 -8.98869 -7.80845 -7.58655 -6.90164 -6.64176 -4.36803 0.65901 0.87168 1.71813 2.60588 2.88611 3.05733 3.07406 3.09495 3.14440 3.27254 3.46911 3.56230 3.96620 4.16825 4.38423 4.59903 4.67530 4.73982 5.12015 5.30562 5.45622 5.61276 5.74692 5.94026 6.12654 6.34870 6.38020 6.59304 6.66280 6.97268 7.06926 7.13014 7.19661 7.28722 7.48704 7.61364 7.80370 7.92761 8.05900 8.26023 8.34436 8.60284 8.75553 8.90519 8.97079 10.26973 Molecular weight = 316.11amu Principal moments of inertia in cm(-1) A = 0.037682 B = 0.002208 C = 0.002133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.887320 B =12677.258262 C =13125.334650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.812 5.812 2 C 0.069 3.931 3 Si 0.916 3.084 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.460 4.460 8 H 0.076 0.924 9 C 0.100 3.900 10 C -0.204 4.204 11 C -0.084 4.084 12 C 0.015 3.985 13 N -0.662 5.662 14 C 0.702 3.298 15 O -0.557 6.557 16 N -0.533 5.533 17 N -0.516 5.516 18 C 0.444 3.556 19 C -0.243 4.243 20 C 0.000 4.000 21 C -0.257 4.257 22 C 0.363 3.637 23 F -0.111 7.111 24 N -0.578 5.578 25 C -0.120 4.120 26 C -0.141 4.141 27 H 0.278 0.722 28 H 0.097 0.903 29 H 0.109 0.891 30 H 0.385 0.615 31 H 0.440 0.560 32 H 0.434 0.566 33 H 0.145 0.855 34 H 0.148 0.852 35 H 0.145 0.855 36 H 0.091 0.909 37 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.180 -18.345 -4.308 21.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C -0.146 4.146 3 Si 0.741 3.259 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.187 1.187 7 C -0.491 4.491 8 H 0.094 0.906 9 C 0.097 3.903 10 C -0.224 4.224 11 C -0.105 4.105 12 C -0.078 4.078 13 N -0.310 5.310 14 C 0.402 3.598 15 O -0.429 6.429 16 N -0.291 5.291 17 N -0.247 5.247 18 C 0.207 3.793 19 C -0.269 4.269 20 C -0.025 4.025 21 C -0.282 4.282 22 C 0.209 3.791 23 F -0.090 7.090 24 N -0.303 5.303 25 C -0.140 4.140 26 C -0.161 4.161 27 H 0.089 0.911 28 H 0.115 0.885 29 H 0.127 0.873 30 H 0.219 0.781 31 H 0.286 0.714 32 H 0.278 0.722 33 H 0.162 0.838 34 H 0.166 0.834 35 H 0.163 0.837 36 H 0.109 0.891 37 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -10.104 -17.442 -2.883 20.362 hybrid contribution -0.565 0.200 -0.580 0.834 sum -10.669 -17.241 -3.463 20.569 Atomic orbital electron populations 1.69759 1.07287 1.28730 1.38112 1.25884 0.94955 1.01200 0.92554 0.86189 0.80261 0.80453 0.79033 1.19527 1.20304 1.18708 1.19501 0.94760 0.90189 1.44602 0.90567 1.17738 0.92293 0.92028 0.88222 1.20813 1.01275 0.94844 1.05445 1.20421 0.92663 0.97974 0.99397 1.17045 0.93927 0.84747 1.12059 1.42096 1.51633 1.22375 1.14874 1.15851 0.80923 0.79221 0.83765 1.91024 1.41420 1.69362 1.41084 1.44755 1.42247 1.27271 1.14787 1.43268 1.42458 1.24108 1.14847 1.17623 0.88038 0.85019 0.88636 1.21210 1.03187 1.01716 1.00832 1.21148 0.94281 0.91270 0.95839 1.21504 1.05778 1.05442 0.95460 1.17611 0.92008 0.87081 0.82443 1.91643 1.94422 1.75180 1.47770 1.66069 1.29509 1.09103 1.25650 1.20263 0.98293 0.92982 1.02488 1.21181 0.97316 0.95454 1.02152 0.91129 0.88478 0.87325 0.78111 0.71420 0.72156 0.83760 0.83406 0.83694 0.89135 0.84946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -20.90 10.59 55.55 0.59 -20.32 16 2 C 0.07 1.73 5.42 -17.34 -0.09 1.64 16 3 Si 0.92 18.88 29.56 -169.99 -5.03 13.85 16 4 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 5 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 6 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 7 C -0.46 -12.14 9.03 -37.85 -0.34 -12.49 16 8 H 0.08 1.93 7.85 -52.49 -0.41 1.52 16 9 C 0.10 2.64 5.55 -106.80 -0.59 2.05 16 10 C -0.20 -5.12 9.74 -39.26 -0.38 -5.50 16 11 C -0.08 -2.00 8.61 -39.79 -0.34 -2.35 16 12 C 0.01 0.32 6.31 -83.57 -0.53 -0.21 16 13 N -0.66 -11.19 5.26 -14.10 -0.07 -11.26 16 14 C 0.70 12.46 8.51 -86.92 -0.74 11.72 16 15 O -0.56 -12.33 14.60 5.30 0.08 -12.25 16 16 N -0.53 -7.38 6.29 27.63 0.17 -7.21 16 17 N -0.52 -5.26 6.41 31.12 0.20 -5.06 16 18 C 0.44 4.38 7.59 -155.02 -1.18 3.20 16 19 C -0.24 -1.61 9.93 -39.22 -0.39 -2.00 16 20 C 0.00 0.00 10.16 -39.34 -0.40 -0.40 16 21 C -0.26 -1.81 10.08 -39.34 -0.40 -2.21 16 22 C 0.36 3.72 8.41 -17.37 -0.15 3.57 16 23 F -0.11 -1.21 17.29 2.25 0.04 -1.17 16 24 N -0.58 -6.79 9.38 -12.78 -0.12 -6.91 16 25 C -0.12 -2.64 9.90 -39.79 -0.39 -3.03 16 26 C -0.14 -3.55 8.61 -39.26 -0.34 -3.89 16 27 H 0.28 6.56 8.30 -40.82 -0.34 6.22 16 28 H 0.10 2.32 8.06 -52.49 -0.42 1.90 16 29 H 0.11 2.57 6.22 -52.49 -0.33 2.24 16 30 H 0.39 4.84 6.75 -40.82 -0.28 4.56 16 31 H 0.44 6.22 8.05 -182.60 -1.47 4.75 16 32 H 0.43 3.32 6.70 -182.60 -1.22 2.10 16 33 H 0.14 0.55 8.06 -52.48 -0.42 0.13 16 34 H 0.15 0.33 8.06 -52.49 -0.42 -0.09 16 35 H 0.15 0.69 8.06 -52.48 -0.42 0.27 16 36 H 0.09 1.71 8.06 -52.49 -0.42 1.28 16 37 H 0.13 3.44 6.13 -52.48 -0.32 3.12 16 LS Contribution 328.83 15.07 4.96 4.96 Total: -1.00 -31.82 328.83 -10.72 -42.54 By element: Atomic # 1 Polarization: 17.99 SS G_CDS: -5.28 Total: 12.72 kcal Atomic # 6 Polarization: -3.63 SS G_CDS: -6.26 Total: -9.89 kcal Atomic # 7 Polarization: -51.52 SS G_CDS: 0.77 Total: -50.75 kcal Atomic # 8 Polarization: -12.33 SS G_CDS: 0.08 Total: -12.25 kcal Atomic # 9 Polarization: -1.21 SS G_CDS: 0.04 Total: -1.17 kcal Atomic # 14 Polarization: 18.88 SS G_CDS: -5.03 Total: 13.85 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -31.82 -10.72 -42.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000806171857.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.626 kcal (2) G-P(sol) polarization free energy of solvation -31.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.539 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds