Wall clock time and date at job start Tue Mar 31 2020 10:42:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86805 * 119.99759 * 2 1 4 4 H 1.48503 * 109.46910 * 269.99704 * 3 2 1 5 5 H 1.48500 * 109.47216 * 29.99899 * 3 2 1 6 6 H 1.48497 * 109.47269 * 149.99875 * 3 2 1 7 7 C 1.37873 * 120.00290 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99789 * 0.02562 * 7 2 1 9 9 C 1.50695 * 120.00057 * 180.02562 * 7 2 1 10 10 O 1.42897 * 109.47146 * 180.02562 * 9 7 2 11 11 C 1.42899 * 114.00314 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47457 * 179.97438 * 11 10 9 13 13 O 1.42905 * 109.47264 * 64.99865 * 12 11 10 14 14 C 1.34948 * 117.00143 * 180.02562 * 13 12 11 15 15 O 1.21668 * 119.99871 * 359.97438 * 14 13 12 16 16 C 1.46134 * 119.99913 * 179.97438 * 14 13 12 17 17 O 1.34973 * 126.19464 * 359.68990 * 16 14 13 18 18 C 1.33910 * 109.70892 * 179.85666 * 17 16 14 19 19 C 1.34798 * 109.36691 * 0.41240 * 18 17 16 20 20 C 1.38890 * 126.19391 * 179.97438 * 16 14 13 21 21 C 1.48156 * 126.90557 * 0.02562 * 20 16 14 22 22 C 1.39468 * 120.13146 * 309.71753 * 21 20 16 23 23 C 1.37983 * 119.85868 * 179.72249 * 22 21 20 24 24 C 1.38343 * 120.13805 * 0.55443 * 23 22 21 25 25 C 1.38342 * 120.26649 * 359.72776 * 24 23 22 26 26 C 1.37986 * 120.13368 * 359.97438 * 25 24 23 27 27 H 0.97006 * 120.00316 * 0.02562 * 1 2 3 28 28 H 1.08999 * 109.47551 * 60.00178 * 9 7 2 29 29 H 1.09004 * 109.47507 * 299.99841 * 9 7 2 30 30 H 1.09004 * 109.47487 * 59.99783 * 11 10 9 31 31 H 1.09002 * 109.46902 * 300.00077 * 11 10 9 32 32 H 1.09001 * 109.47289 * 304.99698 * 12 11 10 33 33 H 1.09004 * 109.47261 * 184.99954 * 12 11 10 34 34 H 1.07995 * 125.31461 * 180.12016 * 18 17 16 35 35 H 1.08000 * 126.43585 * 179.73080 * 19 18 17 36 36 H 1.07999 * 120.06765 * 0.02562 * 22 21 20 37 37 H 1.08009 * 119.92853 * 180.28092 * 23 22 21 38 38 H 1.07995 * 119.86651 * 179.73747 * 24 23 22 39 39 H 1.08007 * 119.93739 * 180.02562 * 25 24 23 40 40 H 1.08001 * 120.06522 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4404 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1939 0.0011 10 8 3.9879 -2.5411 0.0010 11 6 5.4124 -2.6540 0.0021 12 6 5.8070 -4.1322 0.0025 13 8 5.3806 -4.7394 -1.2188 14 6 5.6531 -6.0514 -1.3785 15 8 6.2376 -6.6622 -0.5036 16 6 5.2461 -6.7385 -2.6024 17 8 4.5899 -6.1874 -3.6453 18 6 4.3866 -7.1134 -4.5910 19 6 4.8983 -8.2911 -4.1810 20 6 5.4597 -8.0780 -2.9007 21 6 6.1382 -9.0821 -2.0484 22 6 7.3884 -8.8024 -1.4971 23 6 8.0126 -9.7394 -0.6994 24 6 7.4061 -10.9587 -0.4554 25 6 6.1687 -11.2441 -1.0042 26 6 5.5317 -10.3129 -1.7986 27 1 -0.4851 0.8401 -0.0004 28 1 3.8745 -0.6799 0.8911 29 1 3.8752 -0.6803 -0.8889 30 1 5.8145 -2.1708 0.8926 31 1 5.8159 -2.1701 -0.8874 32 1 5.3306 -4.6352 0.8440 33 1 6.8898 -4.2193 0.0929 34 1 3.8863 -6.9442 -5.5330 35 1 4.8824 -9.2225 -4.7275 36 1 7.8646 -7.8526 -1.6902 37 1 8.9787 -9.5222 -0.2682 38 1 7.9005 -11.6905 0.1661 39 1 5.6998 -12.1975 -0.8099 40 1 4.5655 -10.5367 -2.2262 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815176022.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:42:19 Heat of formation + Delta-G solvation = -83.808670 kcal Electronic energy + Delta-G solvation = -24966.419737 eV Core-core repulsion = 21099.625522 eV Total energy + Delta-G solvation = -3866.794215 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.119 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.87067 -40.28861 -39.13863 -37.28584 -36.26444 -34.03908 -32.69983 -31.31474 -31.01270 -30.47675 -29.37441 -27.58954 -24.69108 -23.11927 -22.84281 -22.14232 -21.85678 -21.30914 -20.15133 -18.67685 -17.46434 -17.01802 -16.92013 -16.53512 -16.17372 -16.13074 -15.24998 -15.05383 -14.96198 -14.81669 -14.44342 -13.85713 -13.61747 -13.39595 -13.36670 -13.21748 -13.06227 -12.60466 -12.59643 -12.44281 -11.75427 -11.45631 -11.32345 -11.18319 -10.97198 -10.76387 -10.60124 -10.48904 -10.33261 -9.87678 -9.21301 -9.20054 -9.04474 -8.91304 -8.54589 -8.51021 -6.12048 -4.11357 0.43940 1.21729 1.29483 2.07148 2.24288 2.75688 2.95978 3.24085 3.30866 3.31755 3.63430 4.22752 4.34382 4.44818 4.53071 4.67357 4.80798 4.81882 4.93717 5.06744 5.10434 5.18921 5.24512 5.32288 5.35925 5.45283 5.53587 5.67255 5.74157 5.79047 5.88065 5.91306 5.95082 6.29329 6.34094 6.36458 6.39480 6.55097 6.62475 6.80330 6.96418 7.57095 7.68385 7.95391 8.63308 8.99608 9.46582 11.00985 Molecular weight = 316.12amu Principal moments of inertia in cm(-1) A = 0.020484 B = 0.002613 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.605479 B =10712.582221 C =11348.329925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.072 3.928 3 Si 0.877 3.123 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.266 1.266 7 C -0.519 4.519 8 H 0.083 0.917 9 C 0.168 3.832 10 O -0.375 6.375 11 C 0.058 3.942 12 C 0.073 3.927 13 O -0.325 6.325 14 C 0.547 3.453 15 O -0.482 6.482 16 C -0.051 4.051 17 O -0.138 6.138 18 C 0.012 3.988 19 C -0.217 4.217 20 C -0.042 4.042 21 C -0.034 4.034 22 C -0.065 4.065 23 C -0.123 4.123 24 C -0.113 4.113 25 C -0.127 4.127 26 C -0.098 4.098 27 H 0.267 0.733 28 H 0.004 0.996 29 H 0.001 0.999 30 H 0.066 0.934 31 H 0.052 0.948 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.216 0.784 35 H 0.162 0.838 36 H 0.120 0.880 37 H 0.123 0.877 38 H 0.121 0.879 39 H 0.123 0.877 40 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.506 -20.508 -7.453 27.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.130 4.130 3 Si 0.703 3.297 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.191 1.191 7 C -0.557 4.557 8 H 0.101 0.899 9 C 0.093 3.907 10 O -0.295 6.295 11 C -0.020 4.020 12 C -0.001 4.001 13 O -0.240 6.240 14 C 0.392 3.608 15 O -0.372 6.372 16 C -0.102 4.102 17 O -0.031 6.031 18 C -0.058 4.058 19 C -0.236 4.236 20 C -0.044 4.044 21 C -0.034 4.034 22 C -0.083 4.083 23 C -0.141 4.141 24 C -0.131 4.131 25 C -0.145 4.145 26 C -0.116 4.116 27 H 0.077 0.923 28 H 0.022 0.978 29 H 0.018 0.982 30 H 0.084 0.916 31 H 0.070 0.930 32 H 0.098 0.902 33 H 0.098 0.902 34 H 0.232 0.768 35 H 0.179 0.821 36 H 0.138 0.862 37 H 0.141 0.859 38 H 0.139 0.861 39 H 0.141 0.859 40 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 16.296 -20.351 -7.152 27.035 hybrid contribution 0.477 1.082 0.028 1.183 sum 16.773 -19.269 -7.124 26.521 Atomic orbital electron populations 1.69875 1.06060 1.27102 1.50277 1.24769 0.94820 0.98748 0.94634 0.86843 0.80321 0.83735 0.78794 1.19885 1.20751 1.19105 1.20879 0.88198 0.95392 1.51262 0.89924 1.20636 0.96338 0.79221 0.94469 1.87984 1.16596 1.29797 1.95082 1.22404 0.86213 0.92613 1.00728 1.22898 0.99272 0.93393 0.84552 1.86347 1.73295 1.22847 1.41515 1.19084 0.76548 0.81174 0.84028 1.90969 1.38811 1.66840 1.40569 1.21077 1.07364 0.91864 0.89913 1.84227 1.57519 1.38025 1.23375 1.24421 1.00668 0.86848 0.93908 1.21786 1.05547 1.00171 0.96127 1.19484 0.99265 0.90783 0.94863 1.18006 0.94468 0.92753 0.98151 1.21119 0.93712 0.98408 0.95041 1.21046 1.00365 0.93866 0.98847 1.21220 0.95525 0.96982 0.99389 1.21021 0.95648 0.99443 0.98427 1.21141 0.99548 0.92516 0.98359 0.92337 0.97806 0.98157 0.91639 0.92970 0.90224 0.90230 0.76798 0.82053 0.86166 0.85916 0.86113 0.85886 0.85873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.81 13.96 55.43 0.77 -27.03 16 2 C 0.07 2.14 5.47 -17.82 -0.10 2.04 16 3 Si 0.88 21.42 27.47 -169.99 -4.67 16.75 16 4 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 6 H -0.27 -6.19 6.54 56.52 0.37 -5.82 16 7 C -0.52 -15.68 9.99 -34.44 -0.34 -16.02 16 8 H 0.08 2.74 8.06 -52.49 -0.42 2.32 16 9 C 0.17 4.32 4.76 36.00 0.17 4.49 16 10 O -0.38 -8.96 10.29 -40.08 -0.41 -9.37 16 11 C 0.06 1.01 6.32 37.16 0.23 1.25 16 12 C 0.07 1.14 5.76 37.16 0.21 1.35 16 13 O -0.32 -5.68 10.09 -45.30 -0.46 -6.14 16 14 C 0.55 8.82 7.89 33.90 0.27 9.08 16 15 O -0.48 -7.89 13.20 -19.39 -0.26 -8.15 16 16 C -0.05 -0.75 7.24 -36.17 -0.26 -1.01 16 17 O -0.14 -1.89 10.65 4.67 0.05 -1.84 16 18 C 0.01 0.11 12.02 29.51 0.35 0.47 16 19 C -0.22 -2.02 10.81 -39.60 -0.43 -2.45 16 20 C -0.04 -0.52 5.69 -104.38 -0.59 -1.11 16 21 C -0.03 -0.41 5.28 -104.91 -0.55 -0.96 16 22 C -0.06 -0.77 7.65 -39.22 -0.30 -1.07 16 23 C -0.12 -1.25 10.03 -39.64 -0.40 -1.65 16 24 C -0.11 -1.03 10.04 -39.50 -0.40 -1.43 16 25 C -0.13 -1.17 10.03 -39.64 -0.40 -1.57 16 26 C -0.10 -1.02 9.74 -39.22 -0.38 -1.40 16 27 H 0.27 7.65 8.31 -40.82 -0.34 7.31 16 28 H 0.00 0.11 7.20 -51.93 -0.37 -0.27 16 29 H 0.00 0.02 7.57 -51.93 -0.39 -0.37 16 30 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.08 1.27 8.13 -51.93 -0.42 0.85 16 33 H 0.08 0.99 8.13 -51.93 -0.42 0.57 16 34 H 0.22 0.99 8.06 -52.49 -0.42 0.56 16 35 H 0.16 1.03 8.06 -52.49 -0.42 0.61 16 36 H 0.12 1.45 7.35 -52.49 -0.39 1.07 16 37 H 0.12 1.00 8.06 -52.48 -0.42 0.58 16 38 H 0.12 0.81 8.06 -52.49 -0.42 0.38 16 39 H 0.12 0.83 8.06 -52.48 -0.42 0.41 16 40 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 LS Contribution 354.50 15.07 5.34 5.34 Total: -1.00 -35.53 354.50 -7.51 -43.04 By element: Atomic # 1 Polarization: 2.36 SS G_CDS: -4.97 Total: -2.61 kcal Atomic # 6 Polarization: -7.08 SS G_CDS: -2.91 Total: -9.99 kcal Atomic # 7 Polarization: -27.81 SS G_CDS: 0.77 Total: -27.03 kcal Atomic # 8 Polarization: -24.42 SS G_CDS: -1.08 Total: -25.50 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.67 Total: 16.75 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -35.53 -7.51 -43.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815176022.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.768 kcal (2) G-P(sol) polarization free energy of solvation -35.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds