Wall clock time and date at job start Tue Mar 31 2020 10:42:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86797 * 119.99910 * 2 1 4 4 H 1.48497 * 109.47435 * 270.00148 * 3 2 1 5 5 H 1.48501 * 109.47205 * 30.00315 * 3 2 1 6 6 H 1.48506 * 109.47205 * 150.00011 * 3 2 1 7 7 C 1.37879 * 120.00168 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00152 * 359.97438 * 7 2 1 9 9 C 1.50704 * 119.99914 * 179.97438 * 7 2 1 10 10 O 1.42898 * 109.46866 * 179.97438 * 9 7 2 11 11 C 1.42904 * 113.99912 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.47221 * 179.97438 * 11 10 9 13 13 O 1.42905 * 109.46728 * 65.00652 * 12 11 10 14 14 C 1.34935 * 116.99958 * 179.97438 * 13 12 11 15 15 O 1.21643 * 119.99716 * 0.02562 * 14 13 12 16 16 C 1.46322 * 119.99835 * 179.97438 * 14 13 12 17 17 C 1.37881 * 125.96224 * 180.02562 * 16 14 13 18 18 C 1.39809 * 106.76065 * 179.97438 * 17 16 14 19 19 C 1.36566 * 107.10939 * 359.97438 * 18 17 16 20 20 C 1.47701 * 125.64891 * 180.02562 * 19 18 17 21 21 C 1.39647 * 120.14734 * 359.72654 * 20 19 18 22 22 C 1.37940 * 119.84106 * 179.69863 * 21 20 19 23 23 C 1.38373 * 120.15359 * 0.57984 * 22 21 20 24 24 C 1.38371 * 120.30394 * 359.71879 * 23 22 21 25 25 C 1.37948 * 120.15411 * 359.97438 * 24 23 22 26 26 O 1.34332 * 108.70157 * 359.77847 * 19 18 17 27 27 H 0.96999 * 120.00753 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.46969 * 60.00161 * 9 7 2 29 29 H 1.08999 * 109.47318 * 300.00071 * 9 7 2 30 30 H 1.09000 * 109.46865 * 60.00255 * 11 10 9 31 31 H 1.08994 * 109.47229 * 300.00235 * 11 10 9 32 32 H 1.09000 * 109.47486 * 305.00590 * 12 11 10 33 33 H 1.09001 * 109.47362 * 184.99867 * 12 11 10 34 34 H 1.08000 * 126.61528 * 359.97438 * 17 16 14 35 35 H 1.07996 * 126.44336 * 180.02562 * 18 17 16 36 36 H 1.07993 * 120.07617 * 359.97438 * 21 20 19 37 37 H 1.08001 * 119.92197 * 180.32355 * 22 21 20 38 38 H 1.07991 * 119.84976 * 179.69700 * 23 22 21 39 39 H 1.08005 * 119.92676 * 180.02562 * 24 23 22 40 40 H 1.08001 * 120.07411 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 8 3.9879 -2.5412 -0.0010 11 6 5.4125 -2.6541 -0.0021 12 6 5.8070 -4.1323 -0.0012 13 8 5.3788 -4.7402 -1.2216 14 6 5.6519 -6.0520 -1.3813 15 8 6.2375 -6.6621 -0.5069 16 6 5.2426 -6.7407 -2.6057 17 6 5.4567 -8.0714 -2.8964 18 6 4.9053 -8.3017 -4.1604 19 6 4.3797 -7.1172 -4.5913 20 6 3.6948 -6.8980 -5.8814 21 6 3.5450 -7.9530 -6.7841 22 6 2.8989 -7.7427 -7.9845 23 6 2.4102 -6.4872 -8.3003 24 6 2.5607 -5.4360 -7.4132 25 6 3.1992 -5.6336 -6.2065 26 8 4.5839 -6.1857 -3.6451 27 1 -0.4851 0.8400 0.0004 28 1 3.8752 -0.6803 0.8889 29 1 3.8746 -0.6799 -0.8911 30 1 5.8159 -2.1702 0.8874 31 1 5.8145 -2.1708 -0.8925 32 1 5.3319 -4.6347 0.8413 33 1 6.8899 -4.2193 0.0875 34 1 5.9543 -8.7959 -2.2688 35 1 4.8960 -9.2400 -4.6949 36 1 3.9303 -8.9321 -6.5409 37 1 2.7777 -8.5589 -8.6813 38 1 1.9095 -6.3270 -9.2436 39 1 2.1766 -4.4587 -7.6657 40 1 3.3156 -4.8123 -5.5148 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815233056.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:42:08 Heat of formation + Delta-G solvation = -87.413467 kcal Electronic energy + Delta-G solvation = -24552.073075 eV Core-core repulsion = 20685.122545 eV Total energy + Delta-G solvation = -3866.950531 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.119 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.88092 -40.32479 -39.24396 -37.31254 -36.28462 -33.61022 -32.70977 -32.52828 -31.24194 -30.54331 -28.97744 -27.57394 -24.81079 -23.40025 -22.70125 -21.94084 -21.75746 -21.30190 -20.58589 -18.76142 -17.65266 -17.11553 -16.96584 -16.66592 -16.18663 -16.13073 -15.27929 -15.18874 -14.84249 -14.64468 -14.36799 -13.91560 -13.74157 -13.36178 -13.24753 -13.24481 -13.04767 -13.03670 -12.61178 -12.45673 -11.76451 -11.69233 -11.35610 -11.23791 -10.99947 -10.77814 -10.60919 -10.51691 -10.42969 -9.92417 -9.87829 -9.29547 -9.21241 -8.91773 -8.51553 -8.27572 -6.12430 -4.11791 0.17056 1.07273 1.13094 2.13079 2.20274 2.76323 2.82875 3.23663 3.30545 3.31411 3.52929 4.14317 4.33996 4.44484 4.50069 4.55206 4.62902 4.76449 4.78831 5.07218 5.09526 5.14604 5.18521 5.28065 5.32133 5.35516 5.45224 5.60984 5.66687 5.68360 5.77257 5.90667 5.94381 6.06385 6.14761 6.20094 6.34896 6.54606 6.57916 6.65047 6.95920 7.56607 7.64788 7.94812 8.62803 8.99204 9.46159 11.00606 Molecular weight = 316.12amu Principal moments of inertia in cm(-1) A = 0.010117 B = 0.003179 C = 0.002513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2766.827329 B = 8804.848414 C =11140.011711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.073 3.927 3 Si 0.876 3.124 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.266 1.266 7 C -0.520 4.520 8 H 0.083 0.917 9 C 0.168 3.832 10 O -0.375 6.375 11 C 0.058 3.942 12 C 0.072 3.928 13 O -0.324 6.324 14 C 0.551 3.449 15 O -0.492 6.492 16 C -0.057 4.057 17 C -0.104 4.104 18 C -0.208 4.208 19 C 0.075 3.925 20 C -0.032 4.032 21 C -0.091 4.091 22 C -0.121 4.121 23 C -0.107 4.107 24 C -0.117 4.117 25 C -0.090 4.090 26 O -0.135 6.135 27 H 0.267 0.733 28 H 0.004 0.996 29 H 0.001 0.999 30 H 0.066 0.934 31 H 0.052 0.948 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.168 0.832 35 H 0.163 0.837 36 H 0.130 0.870 37 H 0.129 0.871 38 H 0.126 0.874 39 H 0.131 0.869 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.567 -16.452 -15.063 25.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.129 4.129 3 Si 0.703 3.297 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.191 1.191 7 C -0.558 4.558 8 H 0.101 0.899 9 C 0.093 3.907 10 O -0.295 6.295 11 C -0.020 4.020 12 C -0.002 4.002 13 O -0.239 6.239 14 C 0.396 3.604 15 O -0.383 6.383 16 C -0.107 4.107 17 C -0.123 4.123 18 C -0.227 4.227 19 C 0.022 3.978 20 C -0.032 4.032 21 C -0.109 4.109 22 C -0.139 4.139 23 C -0.125 4.125 24 C -0.135 4.135 25 C -0.108 4.108 26 O -0.030 6.030 27 H 0.077 0.923 28 H 0.022 0.978 29 H 0.018 0.982 30 H 0.084 0.916 31 H 0.070 0.930 32 H 0.099 0.901 33 H 0.099 0.901 34 H 0.185 0.815 35 H 0.180 0.820 36 H 0.148 0.852 37 H 0.147 0.853 38 H 0.144 0.856 39 H 0.149 0.851 40 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 11.355 -16.294 -14.767 24.748 hybrid contribution 0.605 1.075 0.215 1.253 sum 11.960 -15.219 -14.552 24.216 Atomic orbital electron populations 1.69871 1.06061 1.27109 1.50255 1.24765 0.94813 0.98737 0.94626 0.86846 0.80329 0.83740 0.78795 1.19887 1.20753 1.19099 1.20883 0.88193 0.95394 1.51292 0.89924 1.20637 0.96339 0.79216 0.94470 1.87985 1.16590 1.29800 1.95086 1.22406 0.86215 0.92583 1.00766 1.22923 0.99338 0.93421 0.84541 1.86346 1.73094 1.22847 1.41650 1.19131 0.76175 0.81174 0.83870 1.90933 1.39287 1.67332 1.40722 1.21091 1.07268 0.92842 0.89520 1.22100 0.99969 0.93735 0.96526 1.21696 1.05186 0.98834 0.96979 1.20877 1.00007 0.87282 0.89665 1.17798 1.00429 0.95144 0.89843 1.21068 0.98631 0.97917 0.93291 1.21057 0.98697 0.97547 0.96632 1.21370 0.98635 0.92951 0.99553 1.21201 0.98804 0.99730 0.93720 1.21490 0.95863 0.96338 0.97133 1.84215 1.57876 1.37499 1.23374 0.92333 0.97801 0.98164 0.91590 0.92956 0.90150 0.90149 0.81464 0.81985 0.85216 0.85276 0.85559 0.85086 0.84639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.75 13.96 55.43 0.77 -26.98 16 2 C 0.07 2.14 5.47 -17.82 -0.10 2.05 16 3 Si 0.88 21.38 27.47 -169.99 -4.67 16.71 16 4 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 5 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.27 -6.18 6.54 56.52 0.37 -5.81 16 7 C -0.52 -15.66 9.99 -34.44 -0.34 -16.00 16 8 H 0.08 2.74 8.06 -52.49 -0.42 2.31 16 9 C 0.17 4.31 4.76 36.01 0.17 4.48 16 10 O -0.38 -8.93 10.29 -40.08 -0.41 -9.35 16 11 C 0.06 1.01 6.32 37.16 0.23 1.25 16 12 C 0.07 1.12 5.76 37.16 0.21 1.33 16 13 O -0.32 -5.70 10.09 -45.32 -0.46 -6.16 16 14 C 0.55 8.91 7.91 33.98 0.27 9.18 16 15 O -0.49 -8.23 16.64 -19.37 -0.32 -8.55 16 16 C -0.06 -0.82 7.21 -36.46 -0.26 -1.08 16 17 C -0.10 -1.18 10.65 -39.13 -0.42 -1.60 16 18 C -0.21 -2.08 10.21 -39.60 -0.40 -2.49 16 19 C 0.07 0.91 7.02 -36.32 -0.25 0.65 16 20 C -0.03 -0.35 5.87 -104.98 -0.62 -0.96 16 21 C -0.09 -0.75 9.56 -39.16 -0.37 -1.12 16 22 C -0.12 -0.87 10.03 -39.64 -0.40 -1.27 16 23 C -0.11 -0.82 10.04 -39.48 -0.40 -1.21 16 24 C -0.12 -1.07 10.03 -39.64 -0.40 -1.47 16 25 C -0.09 -1.00 9.72 -39.17 -0.38 -1.39 16 26 O -0.14 -2.03 10.40 3.42 0.04 -1.99 16 27 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16 28 H 0.00 0.11 7.20 -51.93 -0.37 -0.27 16 29 H 0.00 0.02 7.57 -51.93 -0.39 -0.38 16 30 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.08 1.27 8.13 -51.93 -0.42 0.85 16 33 H 0.08 1.01 8.13 -51.93 -0.42 0.58 16 34 H 0.17 1.54 8.06 -52.49 -0.42 1.12 16 35 H 0.16 1.05 7.23 -52.49 -0.38 0.67 16 36 H 0.13 0.75 6.96 -52.49 -0.37 0.38 16 37 H 0.13 0.59 8.06 -52.49 -0.42 0.17 16 38 H 0.13 0.67 8.06 -52.49 -0.42 0.24 16 39 H 0.13 1.00 8.06 -52.48 -0.42 0.58 16 40 H 0.14 1.61 7.90 -52.49 -0.41 1.20 16 LS Contribution 358.15 15.07 5.40 5.40 Total: -1.00 -35.03 358.15 -8.01 -43.04 By element: Atomic # 1 Polarization: 2.43 SS G_CDS: -4.90 Total: -2.47 kcal Atomic # 6 Polarization: -6.19 SS G_CDS: -3.45 Total: -9.65 kcal Atomic # 7 Polarization: -27.75 SS G_CDS: 0.77 Total: -26.98 kcal Atomic # 8 Polarization: -24.89 SS G_CDS: -1.16 Total: -26.04 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -4.67 Total: 16.71 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -35.03 -8.01 -43.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815233056.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.374 kcal (2) G-P(sol) polarization free energy of solvation -35.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds