Wall clock time and date at job start Tue Mar 31 2020 11:00:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00530 * 2 1 4 4 H 1.48504 * 109.47061 * 270.00261 * 3 2 1 5 5 H 1.48497 * 109.46906 * 29.99434 * 3 2 1 6 6 H 1.48498 * 109.47403 * 149.99880 * 3 2 1 7 7 C 1.37880 * 119.99594 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00010 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 180.02562 * 7 2 1 10 10 N 1.46901 * 109.46921 * 179.97438 * 9 7 2 11 11 C 1.46901 * 111.00117 * 294.29883 * 10 9 7 12 12 C 1.53239 * 109.33642 * 172.74646 * 11 10 9 13 13 N 1.47085 * 108.52228 * 53.83345 * 12 11 10 14 14 C 1.34777 * 120.88135 * 128.83305 * 13 12 11 15 15 O 1.21276 * 120.00032 * 179.97438 * 14 13 12 16 16 C 1.50704 * 120.00054 * 359.97438 * 14 13 12 17 17 H 1.09005 * 109.38405 * 29.78122 * 16 14 13 18 18 C 1.52634 * 109.38319 * 149.46578 * 16 14 13 19 19 S 1.81172 * 109.99081 * 187.00620 * 18 16 14 20 20 C 1.81169 * 103.31673 * 297.38699 * 19 18 16 21 21 C 1.52643 * 109.99330 * 62.61644 * 20 19 18 22 22 S 1.81176 * 109.37876 * 269.99999 * 16 14 13 23 23 C 1.47074 * 118.23384 * 308.81378 * 13 12 11 24 24 C 1.46906 * 110.99853 * 169.99766 * 10 9 7 25 25 H 0.97002 * 119.99739 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 27 27 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 28 28 H 1.08991 * 109.49343 * 292.70364 * 11 10 9 29 29 H 1.09000 * 109.49162 * 52.78873 * 11 10 9 30 30 H 1.08995 * 109.63337 * 294.12181 * 12 11 10 31 31 H 1.08999 * 109.62590 * 173.53946 * 12 11 10 32 32 H 1.08994 * 109.38428 * 307.16460 * 18 16 14 33 33 H 1.08995 * 109.38264 * 66.85103 * 18 16 14 34 34 H 1.09002 * 109.38629 * 302.45720 * 20 19 18 35 35 H 1.08998 * 109.38835 * 182.77313 * 20 19 18 36 36 H 1.09002 * 109.38406 * 172.99745 * 21 20 19 37 37 H 1.08990 * 109.30066 * 53.25208 * 21 20 19 38 38 H 1.09008 * 109.63018 * 291.46728 * 23 13 12 39 39 H 1.09004 * 109.78798 * 170.99061 * 23 13 12 40 40 H 1.09005 * 109.49111 * 307.21941 * 24 10 9 41 41 H 1.08996 * 109.49049 * 67.29198 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1942 0.0000 10 7 4.0010 -2.5792 -0.0001 11 6 3.6439 -3.2640 1.2496 12 6 4.0096 -4.7478 1.1375 13 7 5.4257 -4.8524 0.7538 14 6 6.2753 -5.6328 1.4505 15 8 7.4397 -5.7076 1.1198 16 6 5.7785 -6.4125 2.6407 17 1 4.7278 -6.6637 2.4956 18 6 6.5901 -7.6978 2.7788 19 16 5.8766 -8.7446 4.0741 20 6 6.0530 -7.7369 5.5693 21 6 5.2414 -6.4515 5.4311 22 16 5.9549 -5.4047 4.1358 23 6 5.8896 -4.0831 -0.4107 24 6 5.4500 -2.6254 -0.2377 25 1 -0.4850 0.8401 -0.0004 26 1 3.8751 -0.6798 -0.8895 27 1 3.8745 -0.6810 0.8905 28 1 4.1912 -2.8162 2.0789 29 1 2.5726 -3.1656 1.4249 30 1 3.3884 -5.2217 0.3775 31 1 3.8537 -5.2370 2.0990 32 1 6.5787 -8.2364 1.8313 33 1 7.6188 -7.4498 3.0400 34 1 7.1039 -7.4872 5.7154 35 1 5.6937 -8.3007 6.4301 36 1 5.2528 -5.9129 6.3787 37 1 4.2133 -6.7011 5.1690 38 1 5.4492 -4.4931 -1.3196 39 1 6.9766 -4.1323 -0.4762 40 1 5.6885 -2.0638 -1.1410 41 1 5.9721 -2.1864 0.6124 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000827483454.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:49 Heat of formation + Delta-G solvation = -15.598902 kcal Electronic energy + Delta-G solvation = -22610.764329 eV Core-core repulsion = 19357.417485 eV Total energy + Delta-G solvation = -3253.346844 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 316.102 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.26730 -37.79546 -34.62353 -34.23727 -32.94400 -32.36472 -30.85657 -28.84424 -26.27943 -24.83900 -24.23459 -23.30456 -21.73070 -20.59720 -19.13746 -17.95742 -17.29104 -16.86678 -16.43117 -15.93673 -15.62503 -15.09713 -14.67622 -14.58710 -14.58145 -14.19414 -13.93146 -13.75496 -13.70476 -13.61322 -13.29332 -12.74124 -12.45320 -12.38493 -12.02423 -11.62896 -11.55045 -11.23715 -11.14696 -10.82791 -10.66943 -10.61681 -10.39253 -10.18921 -9.94678 -9.79624 -9.37896 -8.65702 -8.62466 -8.36831 -8.06846 -7.50798 -6.11672 -4.09701 0.84408 1.16321 1.84361 2.04643 2.73083 2.91391 3.24459 3.32410 3.34231 4.02264 4.15582 4.26302 4.36672 4.49201 4.52304 4.62310 4.76781 4.98400 5.09750 5.15774 5.19753 5.26370 5.28318 5.35474 5.42136 5.53922 5.63894 5.70753 5.88203 6.11460 6.31301 6.38462 6.49709 6.76712 6.88782 7.29612 7.49392 7.76759 7.90877 7.97531 8.56525 8.95141 9.49898 11.01106 Molecular weight = 316.10amu Principal moments of inertia in cm(-1) A = 0.021794 B = 0.003351 C = 0.003132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.457972 B = 8352.885876 C = 8938.065157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.070 3.930 3 Si 0.874 3.126 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.268 1.268 7 C -0.512 4.512 8 H 0.081 0.919 9 C 0.163 3.837 10 N -0.527 5.527 11 C 0.052 3.948 12 C 0.106 3.894 13 N -0.595 5.595 14 C 0.539 3.461 15 O -0.534 6.534 16 C -0.091 4.091 17 H 0.123 0.877 18 C -0.069 4.069 19 S -0.244 6.244 20 C -0.092 4.092 21 C -0.097 4.097 22 S -0.197 6.197 23 C 0.119 3.881 24 C 0.038 3.962 25 H 0.264 0.736 26 H 0.026 0.974 27 H -0.010 1.010 28 H 0.030 0.970 29 H 0.104 0.896 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.119 0.881 33 H 0.107 0.893 34 H 0.098 0.902 35 H 0.118 0.882 36 H 0.122 0.878 37 H 0.101 0.899 38 H 0.077 0.923 39 H 0.090 0.910 40 H 0.083 0.917 41 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.742 -15.379 9.549 21.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.132 4.132 3 Si 0.701 3.299 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.193 1.193 7 C -0.550 4.550 8 H 0.099 0.901 9 C 0.037 3.963 10 N -0.251 5.251 11 C -0.077 4.077 12 C -0.017 4.017 13 N -0.328 5.328 14 C 0.323 3.677 15 O -0.412 6.412 16 C -0.224 4.224 17 H 0.141 0.859 18 C -0.220 4.220 19 S -0.016 6.016 20 C -0.242 4.242 21 C -0.248 4.248 22 S 0.031 5.969 23 C -0.003 4.003 24 C -0.091 4.091 25 H 0.074 0.926 26 H 0.044 0.956 27 H 0.007 0.993 28 H 0.049 0.951 29 H 0.122 0.878 30 H 0.099 0.901 31 H 0.100 0.900 32 H 0.137 0.863 33 H 0.126 0.874 34 H 0.117 0.883 35 H 0.137 0.863 36 H 0.140 0.860 37 H 0.120 0.880 38 H 0.096 0.904 39 H 0.108 0.892 40 H 0.101 0.899 41 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 11.957 -15.552 9.010 21.588 hybrid contribution 0.574 1.470 0.673 1.715 sum 12.531 -14.083 9.683 21.192 Atomic orbital electron populations 1.69885 1.06112 1.26930 1.50778 1.24883 0.94724 0.98849 0.94723 0.86882 0.80309 0.84052 0.78640 1.20106 1.21162 1.19305 1.20993 0.88555 0.94736 1.50724 0.90052 1.20177 0.97177 0.83711 0.95258 1.61911 1.09990 1.19334 1.33889 1.22334 1.03140 0.91279 0.90977 1.22133 0.80008 0.98840 1.00676 1.48162 1.10379 1.44263 1.30014 1.19393 0.85786 0.79728 0.82825 1.90693 1.16790 1.64567 1.69160 1.23570 1.05100 0.97650 0.96095 0.85938 1.23393 1.02263 0.95413 1.00899 1.86863 1.81632 1.29187 1.03880 1.23580 1.04368 0.97768 0.98460 1.23675 1.02561 0.97583 1.00947 1.87318 1.81266 1.27123 1.01237 1.21795 1.00320 0.90908 0.87303 1.22454 0.90490 0.95131 1.01054 0.92592 0.95604 0.99274 0.95137 0.87773 0.90120 0.90018 0.86290 0.87427 0.88332 0.86349 0.85974 0.88048 0.90448 0.89197 0.89872 0.95322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.67 13.96 55.43 0.77 -25.90 16 2 C 0.07 1.96 5.47 -17.82 -0.10 1.87 16 3 Si 0.87 20.96 27.47 -169.99 -4.67 16.29 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.27 -6.25 6.54 56.52 0.37 -5.88 16 7 C -0.51 -13.86 8.96 -34.44 -0.31 -14.17 16 8 H 0.08 2.37 7.37 -52.49 -0.39 1.98 16 9 C 0.16 3.78 3.79 -4.97 -0.02 3.76 16 10 N -0.53 -10.30 4.62 -235.76 -1.09 -11.39 16 11 C 0.05 0.90 5.46 -3.70 -0.02 0.88 16 12 C 0.11 1.46 6.35 -3.60 -0.02 1.44 16 13 N -0.60 -8.50 3.01 -172.46 -0.52 -9.01 16 14 C 0.54 7.61 6.74 -10.98 -0.07 7.54 16 15 O -0.53 -8.92 15.77 5.56 0.09 -8.84 16 16 C -0.09 -1.01 1.92 -28.07 -0.05 -1.07 16 17 H 0.12 1.24 6.24 -51.91 -0.32 0.92 16 18 C -0.07 -0.70 5.03 36.97 0.19 -0.52 16 19 S -0.24 -2.20 22.05 -107.50 -2.37 -4.57 16 20 C -0.09 -0.62 6.25 36.97 0.23 -0.39 16 21 C -0.10 -0.72 6.25 36.97 0.23 -0.49 16 22 S -0.20 -2.19 21.30 -107.50 -2.29 -4.49 16 23 C 0.12 1.73 6.59 -3.61 -0.02 1.70 16 24 C 0.04 0.63 5.62 -3.70 -0.02 0.61 16 25 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 26 H 0.03 0.60 7.40 -51.93 -0.38 0.22 16 27 H -0.01 -0.25 7.18 -51.93 -0.37 -0.62 16 28 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.10 2.01 6.67 -51.93 -0.35 1.66 16 30 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 31 H 0.08 0.95 5.56 -51.93 -0.29 0.66 16 32 H 0.12 1.18 8.13 -51.92 -0.42 0.76 16 33 H 0.11 1.18 8.06 -51.92 -0.42 0.76 16 34 H 0.10 0.68 8.14 -51.92 -0.42 0.25 16 35 H 0.12 0.59 8.14 -51.92 -0.42 0.16 16 36 H 0.12 0.71 8.14 -51.92 -0.42 0.29 16 37 H 0.10 0.72 8.14 -51.92 -0.42 0.30 16 38 H 0.08 1.07 8.14 -51.92 -0.42 0.65 16 39 H 0.09 1.29 7.07 -51.93 -0.37 0.92 16 40 H 0.08 1.29 7.99 -51.93 -0.41 0.88 16 41 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 342.48 15.07 5.16 5.16 Total: -1.00 -31.13 342.48 -11.18 -42.31 By element: Atomic # 1 Polarization: 5.54 SS G_CDS: -6.27 Total: -0.74 kcal Atomic # 6 Polarization: 1.16 SS G_CDS: 0.01 Total: 1.16 kcal Atomic # 7 Polarization: -45.47 SS G_CDS: -0.83 Total: -46.30 kcal Atomic # 8 Polarization: -8.92 SS G_CDS: 0.09 Total: -8.84 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -4.67 Total: 16.29 kcal Atomic # 16 Polarization: -4.39 SS G_CDS: -4.66 Total: -9.05 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.13 -11.18 -42.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827483454.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.714 kcal (2) G-P(sol) polarization free energy of solvation -31.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds