Wall clock time and date at job start Tue Mar 31 2020 11:00:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00530 * 2 1 4 4 H 1.48504 * 109.47061 * 270.00261 * 3 2 1 5 5 H 1.48497 * 109.46906 * 29.99434 * 3 2 1 6 6 H 1.48498 * 109.47403 * 149.99880 * 3 2 1 7 7 C 1.37880 * 119.99594 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00010 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 180.02562 * 7 2 1 10 10 N 1.46901 * 109.46921 * 179.97438 * 9 7 2 11 11 C 1.46901 * 111.00117 * 294.29883 * 10 9 7 12 12 C 1.53239 * 109.33642 * 172.74646 * 11 10 9 13 13 N 1.47085 * 108.52228 * 53.83345 * 12 11 10 14 14 C 1.34777 * 120.88135 * 128.83305 * 13 12 11 15 15 O 1.21276 * 120.00032 * 179.97438 * 14 13 12 16 16 C 1.50704 * 120.00054 * 359.97438 * 14 13 12 17 17 H 1.09005 * 109.38405 * 29.78122 * 16 14 13 18 18 C 1.52634 * 109.38319 * 149.46578 * 16 14 13 19 19 S 1.81172 * 109.99081 * 187.00620 * 18 16 14 20 20 C 1.81169 * 103.31673 * 297.38699 * 19 18 16 21 21 C 1.52643 * 109.99330 * 62.61644 * 20 19 18 22 22 S 1.81176 * 109.37876 * 269.99999 * 16 14 13 23 23 C 1.47074 * 118.23384 * 308.81378 * 13 12 11 24 24 C 1.46906 * 110.99853 * 169.99766 * 10 9 7 25 25 H 0.97002 * 119.99739 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 27 27 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 28 28 H 1.08991 * 109.49343 * 292.70364 * 11 10 9 29 29 H 1.09000 * 109.49162 * 52.78873 * 11 10 9 30 30 H 1.08995 * 109.63337 * 294.12181 * 12 11 10 31 31 H 1.08999 * 109.62590 * 173.53946 * 12 11 10 32 32 H 1.08994 * 109.38428 * 307.16460 * 18 16 14 33 33 H 1.08995 * 109.38264 * 66.85103 * 18 16 14 34 34 H 1.09002 * 109.38629 * 302.45720 * 20 19 18 35 35 H 1.08998 * 109.38835 * 182.77313 * 20 19 18 36 36 H 1.09002 * 109.38406 * 172.99745 * 21 20 19 37 37 H 1.08990 * 109.30066 * 53.25208 * 21 20 19 38 38 H 1.09008 * 109.63018 * 291.46728 * 23 13 12 39 39 H 1.09004 * 109.78798 * 170.99061 * 23 13 12 40 40 H 1.09005 * 109.49111 * 307.21941 * 24 10 9 41 41 H 1.08996 * 109.49049 * 67.29198 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1942 0.0000 10 7 4.0010 -2.5792 -0.0001 11 6 3.6439 -3.2640 1.2496 12 6 4.0096 -4.7478 1.1375 13 7 5.4257 -4.8524 0.7538 14 6 6.2753 -5.6328 1.4505 15 8 7.4397 -5.7076 1.1198 16 6 5.7785 -6.4125 2.6407 17 1 4.7278 -6.6637 2.4956 18 6 6.5901 -7.6978 2.7788 19 16 5.8766 -8.7446 4.0741 20 6 6.0530 -7.7369 5.5693 21 6 5.2414 -6.4515 5.4311 22 16 5.9549 -5.4047 4.1358 23 6 5.8896 -4.0831 -0.4107 24 6 5.4500 -2.6254 -0.2377 25 1 -0.4850 0.8401 -0.0004 26 1 3.8751 -0.6798 -0.8895 27 1 3.8745 -0.6810 0.8905 28 1 4.1912 -2.8162 2.0789 29 1 2.5726 -3.1656 1.4249 30 1 3.3884 -5.2217 0.3775 31 1 3.8537 -5.2370 2.0990 32 1 6.5787 -8.2364 1.8313 33 1 7.6188 -7.4498 3.0400 34 1 7.1039 -7.4872 5.7154 35 1 5.6937 -8.3007 6.4301 36 1 5.2528 -5.9129 6.3787 37 1 4.2133 -6.7011 5.1690 38 1 5.4492 -4.4931 -1.3196 39 1 6.9766 -4.1323 -0.4762 40 1 5.6885 -2.0638 -1.1410 41 1 5.9721 -2.1864 0.6124 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000827483454.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:49 Heat of formation + Delta-G solvation = -35.734022 kcal Electronic energy + Delta-G solvation = -22611.637453 eV Core-core repulsion = 19357.417485 eV Total energy + Delta-G solvation = -3254.219968 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 316.102 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.44262 -39.17225 -36.08078 -35.05331 -34.42707 -33.61601 -32.10669 -30.53744 -27.73475 -25.97264 -24.83803 -24.62542 -23.35692 -22.01423 -20.26828 -19.06236 -18.89209 -18.22835 -17.22456 -17.02673 -16.60624 -16.53940 -16.07723 -16.03512 -15.53220 -15.33493 -15.20801 -14.93245 -14.72746 -14.49621 -14.42752 -14.15262 -13.93249 -13.60216 -13.17603 -12.96483 -12.85096 -12.54580 -12.40408 -12.28763 -12.20972 -11.96385 -11.85588 -11.42079 -11.38816 -11.12050 -10.76775 -10.71091 -9.89232 -9.15990 -9.08482 -8.84284 -8.27112 -6.29870 -0.00564 0.47310 1.12818 1.35491 1.35568 1.37046 1.46517 1.66019 1.83012 2.34775 3.04602 3.10626 3.13193 3.29218 3.59333 3.66737 3.91185 3.99178 4.01003 4.13560 4.18996 4.22915 4.32347 4.37301 4.49427 4.56947 4.60303 4.67538 4.73787 4.79564 4.81890 4.91341 5.01959 5.09876 5.31918 5.52541 5.90741 6.18251 6.28677 6.59032 6.76191 6.85166 7.33714 8.88764 Molecular weight = 316.10amu Principal moments of inertia in cm(-1) A = 0.021794 B = 0.003351 C = 0.003132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.457972 B = 8352.885876 C = 8938.065157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.013 3.987 3 Si 0.940 3.060 4 H -0.266 1.266 5 H -0.283 1.283 6 H -0.256 1.256 7 C -0.513 4.513 8 H 0.047 0.953 9 C 0.172 3.828 10 N -0.537 5.537 11 C 0.055 3.945 12 C 0.119 3.881 13 N -0.599 5.599 14 C 0.539 3.461 15 O -0.562 6.562 16 C -0.079 4.079 17 H 0.134 0.866 18 C -0.065 4.065 19 S -0.252 6.252 20 C -0.085 4.085 21 C -0.081 4.081 22 S -0.247 6.247 23 C 0.124 3.876 24 C 0.041 3.959 25 H 0.266 0.734 26 H 0.031 0.969 27 H -0.016 1.016 28 H 0.024 0.976 29 H 0.080 0.920 30 H 0.087 0.913 31 H 0.106 0.894 32 H 0.118 0.882 33 H 0.095 0.905 34 H 0.099 0.901 35 H 0.146 0.854 36 H 0.144 0.856 37 H 0.109 0.891 38 H 0.087 0.913 39 H 0.094 0.906 40 H 0.094 0.906 41 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.860 -16.010 10.599 23.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.185 4.185 3 Si 0.765 3.235 4 H -0.191 1.191 5 H -0.209 1.209 6 H -0.180 1.180 7 C -0.551 4.551 8 H 0.065 0.935 9 C 0.045 3.955 10 N -0.262 5.262 11 C -0.074 4.074 12 C -0.004 4.004 13 N -0.331 5.331 14 C 0.324 3.676 15 O -0.442 6.442 16 C -0.212 4.212 17 H 0.152 0.848 18 C -0.216 4.216 19 S -0.023 6.023 20 C -0.235 4.235 21 C -0.231 4.231 22 S -0.020 6.020 23 C 0.001 3.999 24 C -0.088 4.088 25 H 0.075 0.925 26 H 0.049 0.951 27 H 0.001 0.999 28 H 0.042 0.958 29 H 0.098 0.902 30 H 0.105 0.895 31 H 0.124 0.876 32 H 0.136 0.864 33 H 0.114 0.886 34 H 0.118 0.882 35 H 0.164 0.836 36 H 0.161 0.839 37 H 0.127 0.873 38 H 0.105 0.895 39 H 0.112 0.888 40 H 0.112 0.888 41 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 13.089 -16.209 10.063 23.136 hybrid contribution 0.205 1.574 0.419 1.642 sum 13.293 -14.634 10.482 22.377 Atomic orbital electron populations 1.70027 1.07923 1.28013 1.52508 1.25736 0.95497 1.02751 0.94502 0.85816 0.79263 0.79283 0.79170 1.19062 1.20891 1.18021 1.21209 0.90660 0.93472 1.49762 0.93483 1.19938 0.94597 0.86007 0.94972 1.61834 1.12117 1.17219 1.34991 1.22268 1.01532 0.93601 0.89977 1.22029 0.79875 0.96174 1.02286 1.48213 1.10498 1.44378 1.30007 1.19837 0.85270 0.79364 0.83113 1.90677 1.17949 1.65565 1.69970 1.23464 1.05639 0.97347 0.94748 0.84806 1.23268 1.01538 0.95113 1.01650 1.86917 1.81313 1.29494 1.04623 1.23665 1.04596 0.97338 0.97910 1.23767 1.02460 0.97066 0.99805 1.87494 1.82177 1.29251 1.03093 1.21730 1.00599 0.89621 0.87903 1.22503 0.88214 0.96826 1.01223 0.92457 0.95140 0.99874 0.95816 0.90189 0.89471 0.87612 0.86365 0.88589 0.88203 0.83649 0.83864 0.87276 0.89483 0.88759 0.88759 0.96028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.22 13.96 21.45 0.30 -56.93 16 2 C 0.01 0.73 5.47 84.66 0.46 1.19 16 3 Si 0.94 43.08 27.47 68.60 1.88 44.96 16 4 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 5 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 6 H -0.26 -11.13 6.54 99.48 0.65 -10.48 16 7 C -0.51 -28.29 8.96 25.60 0.23 -28.06 16 8 H 0.05 2.85 7.37 -2.91 -0.02 2.83 16 9 C 0.17 7.93 3.79 85.56 0.32 8.25 16 10 N -0.54 -20.84 4.62 -899.82 -4.16 -25.00 16 11 C 0.06 1.93 5.46 86.38 0.47 2.40 16 12 C 0.12 3.14 6.35 86.35 0.55 3.69 16 13 N -0.60 -16.38 3.01 -817.94 -2.46 -18.84 16 14 C 0.54 14.67 6.74 87.66 0.59 15.26 16 15 O -0.56 -18.42 15.77 -3.02 -0.05 -18.47 16 16 C -0.08 -1.65 1.92 29.73 0.06 -1.59 16 17 H 0.13 2.44 6.24 -2.39 -0.01 2.42 16 18 C -0.07 -1.25 5.03 71.86 0.36 -0.88 16 19 S -0.25 -4.01 22.05 -56.49 -1.25 -5.26 16 20 C -0.09 -0.91 6.25 71.86 0.45 -0.46 16 21 C -0.08 -0.96 6.25 71.86 0.45 -0.51 16 22 S -0.25 -5.15 21.30 -56.49 -1.20 -6.35 16 23 C 0.12 3.44 6.59 86.35 0.57 4.01 16 24 C 0.04 1.32 5.62 86.38 0.49 1.80 16 25 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 26 H 0.03 1.38 7.40 -2.39 -0.02 1.36 16 27 H -0.02 -0.78 7.18 -2.39 -0.02 -0.79 16 28 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.08 3.18 6.67 -2.39 -0.02 3.17 16 30 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 31 H 0.11 2.28 5.56 -2.39 -0.01 2.27 16 32 H 0.12 2.24 8.13 -2.40 -0.02 2.22 16 33 H 0.10 2.05 8.06 -2.40 -0.02 2.03 16 34 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.15 0.85 8.14 -2.40 -0.02 0.83 16 36 H 0.14 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.11 1.19 8.14 -2.40 -0.02 1.17 16 38 H 0.09 2.27 8.14 -2.38 -0.02 2.25 16 39 H 0.09 2.58 7.07 -2.39 -0.02 2.56 16 40 H 0.09 2.78 7.99 -2.38 -0.02 2.77 16 41 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 Total: -1.00 -67.92 342.48 -0.97 -68.89 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: 0.96 Total: 11.89 kcal Atomic # 6 Polarization: 0.09 SS G_CDS: 5.00 Total: 5.09 kcal Atomic # 7 Polarization: -94.44 SS G_CDS: -6.32 Total: -100.76 kcal Atomic # 8 Polarization: -18.42 SS G_CDS: -0.05 Total: -18.47 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 1.88 Total: 44.96 kcal Atomic # 16 Polarization: -9.16 SS G_CDS: -2.45 Total: -11.61 kcal Total: -67.92 -0.97 -68.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827483454.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.157 kcal (2) G-P(sol) polarization free energy of solvation -67.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds