Wall clock time and date at job start Tue Mar 31 2020 11:42:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47503 * 2 1 4 4 C 1.50692 * 109.47493 * 120.00603 * 2 1 3 5 5 H 1.07997 * 120.00745 * 114.48070 * 4 2 1 6 6 C 1.37886 * 119.99910 * 294.47841 * 4 2 1 7 7 N 1.31515 * 119.99901 * 164.57919 * 6 4 2 8 8 Si 1.86802 * 119.99687 * 344.86044 * 6 4 2 9 9 H 1.48494 * 109.46954 * 269.71597 * 8 6 4 10 10 H 1.48494 * 109.47384 * 29.72405 * 8 6 4 11 11 H 1.48507 * 109.46889 * 149.72442 * 8 6 4 12 12 O 1.45205 * 109.46795 * 240.00614 * 2 1 3 13 13 C 1.34711 * 117.00091 * 90.00057 * 12 2 1 14 14 O 1.21464 * 120.00273 * 359.97438 * 13 12 2 15 15 C 1.47734 * 119.99837 * 179.97438 * 13 12 2 16 16 C 1.39627 * 120.14619 * 359.72018 * 15 13 12 17 17 C 1.37947 * 119.84203 * 179.78687 * 16 15 13 18 18 C 1.38367 * 120.15186 * 0.49708 * 17 16 15 19 19 C 1.50702 * 119.85098 * 179.76371 * 18 17 16 20 20 H 1.08995 * 109.47002 * 179.97438 * 19 18 17 21 21 C 1.53002 * 109.47094 * 59.97349 * 19 18 17 22 22 C 1.52998 * 109.46819 * 299.97641 * 19 18 17 23 23 F 1.39899 * 109.47443 * 59.99627 * 22 19 18 24 24 F 1.39901 * 109.46968 * 180.02562 * 22 19 18 25 25 F 1.39906 * 109.46814 * 299.99554 * 22 19 18 26 26 C 1.38364 * 120.30087 * 359.73208 * 18 17 16 27 27 C 1.37940 * 120.15420 * 0.02962 * 26 18 17 28 28 H 1.08999 * 109.47350 * 173.55261 * 1 2 3 29 29 H 1.09002 * 109.47000 * 293.55696 * 1 2 3 30 30 H 1.09003 * 109.47267 * 53.55334 * 1 2 3 31 31 H 0.96995 * 119.99950 * 355.18999 * 7 6 4 32 32 H 1.07992 * 120.07789 * 0.02562 * 16 15 13 33 33 H 1.07999 * 119.92369 * 180.22864 * 17 16 15 34 34 H 1.08996 * 109.47283 * 60.00161 * 21 19 18 35 35 H 1.08995 * 109.46961 * 180.02562 * 21 19 18 36 36 H 1.09010 * 109.47090 * 300.00293 * 21 19 18 37 37 H 1.08005 * 119.92390 * 180.02562 * 26 18 17 38 38 H 1.08003 * 120.08098 * 179.97438 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2303 5 1 2.5778 -1.6376 1.1337 6 6 1.7957 -0.1769 2.4795 7 7 1.9545 -0.9201 3.5528 8 14 1.2421 1.5994 2.6467 9 1 2.4318 2.4785 2.7763 10 1 0.4656 1.9913 1.4432 11 1 0.3888 1.7402 3.8540 12 8 2.0139 -0.6844 -1.1857 13 6 2.2178 0.0669 -2.2851 14 8 1.9969 1.2609 -2.2544 15 6 2.7100 -0.5615 -3.5283 16 6 2.9705 -1.9327 -3.5653 17 6 3.4257 -2.5137 -4.7307 18 6 3.6341 -1.7391 -5.8582 19 6 4.1367 -2.3799 -7.1262 20 1 4.2391 -1.6204 -7.9012 21 6 3.1423 -3.4477 -7.5867 22 6 5.4973 -3.0289 -6.8649 23 9 5.3658 -4.0037 -5.8701 24 9 5.9642 -3.6234 -8.0422 25 9 6.4065 -2.0525 -6.4438 26 6 3.3825 -0.3789 -5.8269 27 6 2.9223 0.2143 -4.6697 28 1 -0.3634 -1.0211 -0.1154 29 1 -0.3633 0.4107 0.9420 30 1 -0.3634 0.6105 -0.8267 31 1 2.1699 -1.8616 3.4633 32 1 2.8122 -2.5377 -2.6849 33 1 3.6241 -3.5748 -4.7619 34 1 2.1730 -2.9854 -7.7728 35 1 3.5061 -3.9115 -8.5036 36 1 3.0398 -4.2073 -6.8116 37 1 3.5469 0.2199 -6.7106 38 1 2.7267 1.2762 -4.6464 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835158785.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:30 Heat of formation + Delta-G solvation = -226.004404 kcal Electronic energy + Delta-G solvation = -26149.903388 eV Core-core repulsion = 21735.086363 eV Total energy + Delta-G solvation = -4414.817025 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.107 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -50.41323 -47.91366 -47.84794 -40.22422 -39.02502 -36.03134 -35.11405 -33.28731 -31.29325 -30.68085 -29.90771 -26.79128 -25.09060 -24.57127 -22.91762 -22.18656 -21.02078 -19.81222 -18.80402 -18.70840 -18.07446 -17.77104 -17.19964 -16.55564 -15.62949 -15.29968 -15.08351 -14.87462 -14.65194 -14.44784 -14.26396 -14.06000 -14.01871 -13.92278 -13.62249 -13.50559 -13.32280 -13.12567 -12.85816 -12.68898 -12.47971 -12.18009 -11.83560 -11.72999 -11.58318 -11.47558 -11.11045 -10.66346 -10.19795 -10.08082 -9.83194 -9.66842 -9.15817 -9.07455 -8.90512 -8.45246 -6.65479 -4.27481 0.56421 1.20902 2.38857 2.83443 3.33764 3.36601 3.38751 3.44832 3.52270 3.57459 3.65365 3.84477 4.28684 4.36796 4.44444 4.55300 4.77577 4.80930 5.08114 5.09828 5.16125 5.23000 5.23924 5.40304 5.59921 5.64145 5.83144 6.07457 6.17530 6.19759 6.28776 6.41376 6.47190 6.64248 6.67198 7.09079 7.30397 7.76280 8.21617 8.39987 8.79953 9.40174 10.76435 Molecular weight = 316.11amu Principal moments of inertia in cm(-1) A = 0.026330 B = 0.002869 C = 0.002761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.184780 B = 9756.314807 C =10139.378207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.196 3.804 3 H 0.041 0.959 4 C -0.608 4.608 5 H 0.069 0.931 6 C 0.041 3.959 7 N -0.894 5.894 8 Si 1.035 2.965 9 H -0.280 1.280 10 H -0.268 1.268 11 H -0.279 1.279 12 O -0.338 6.338 13 C 0.494 3.506 14 O -0.517 6.517 15 C -0.103 4.103 16 C -0.058 4.058 17 C -0.121 4.121 18 C -0.079 4.079 19 C -0.092 4.092 20 H 0.123 0.877 21 C -0.151 4.151 22 C 0.456 3.544 23 F -0.178 7.178 24 F -0.184 7.184 25 F -0.179 7.179 26 C -0.113 4.113 27 C -0.060 4.060 28 H 0.054 0.946 29 H 0.067 0.933 30 H 0.031 0.969 31 H 0.272 0.728 32 H 0.146 0.854 33 H 0.138 0.862 34 H 0.083 0.917 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.133 0.867 38 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.337 -4.131 -25.124 25.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.142 3.858 3 H 0.058 0.942 4 C -0.645 4.645 5 H 0.087 0.913 6 C -0.165 4.165 7 N -0.527 5.527 8 Si 0.861 3.139 9 H -0.207 1.207 10 H -0.194 1.194 11 H -0.205 1.205 12 O -0.254 6.254 13 C 0.338 3.662 14 O -0.408 6.408 15 C -0.104 4.104 16 C -0.076 4.076 17 C -0.139 4.139 18 C -0.079 4.079 19 C -0.111 4.111 20 H 0.141 0.859 21 C -0.208 4.208 22 C 0.401 3.599 23 F -0.159 7.159 24 F -0.165 7.165 25 F -0.160 7.160 26 C -0.131 4.131 27 C -0.078 4.078 28 H 0.073 0.927 29 H 0.086 0.914 30 H 0.050 0.950 31 H 0.083 0.917 32 H 0.163 0.837 33 H 0.156 0.844 34 H 0.101 0.899 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.151 0.849 38 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 2.929 -2.654 -23.910 24.235 hybrid contribution 0.647 -1.213 -0.958 1.676 sum 3.576 -3.867 -24.868 25.420 Atomic orbital electron populations 1.22518 0.97999 1.00878 1.00694 1.20983 0.90947 0.94156 0.79703 0.94161 1.21931 1.41365 1.11709 0.89505 0.91263 1.25671 0.94128 1.05519 0.91186 1.70811 1.43014 1.08538 1.30297 0.84236 0.77795 0.75299 0.76538 1.20680 1.19361 1.20497 1.86596 1.75622 1.42562 1.20607 1.21120 0.74979 0.85319 0.84789 1.90756 1.49018 1.16225 1.84826 1.19513 1.03831 0.94461 0.92619 1.21598 0.93773 0.93824 0.98435 1.21226 0.99763 1.00735 0.92162 1.19533 1.00645 0.94181 0.93574 1.21413 0.90762 1.00359 0.98614 0.85887 1.21917 0.98904 0.97496 1.02511 1.20514 0.88279 0.77021 0.74037 1.93156 1.95863 1.64527 1.62357 1.93179 1.90366 1.84856 1.48100 1.93217 1.70134 1.62411 1.90245 1.20891 1.00390 0.93419 0.98357 1.21275 0.94987 1.00655 0.90857 0.92687 0.91378 0.94983 0.91740 0.83654 0.84440 0.89855 0.90807 0.90764 0.84937 0.84122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.74 8.83 37.16 0.33 -3.41 16 2 C 0.20 4.97 2.11 -27.89 -0.06 4.91 16 3 H 0.04 1.06 5.79 -51.93 -0.30 0.76 16 4 C -0.61 -17.34 9.18 -34.44 -0.32 -17.66 16 5 H 0.07 2.11 8.06 -52.49 -0.42 1.69 16 6 C 0.04 1.18 5.33 -17.82 -0.09 1.08 16 7 N -0.89 -26.92 13.70 55.43 0.76 -26.16 16 8 Si 1.03 24.87 26.17 -169.99 -4.45 20.42 16 9 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 10 H -0.27 -6.03 5.53 56.52 0.31 -5.71 16 11 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 12 O -0.34 -7.84 9.12 -40.52 -0.37 -8.21 16 13 C 0.49 10.14 7.87 34.61 0.27 10.41 16 14 O -0.52 -11.60 15.61 -19.24 -0.30 -11.90 16 15 C -0.10 -1.64 5.87 -104.98 -0.62 -2.25 16 16 C -0.06 -0.81 9.62 -39.17 -0.38 -1.19 16 17 C -0.12 -1.35 8.35 -39.64 -0.33 -1.68 16 18 C -0.08 -0.76 4.53 -104.53 -0.47 -1.24 16 19 C -0.09 -0.65 2.60 -91.77 -0.24 -0.89 16 20 H 0.12 0.60 7.87 -51.93 -0.41 0.20 16 21 C -0.15 -0.85 8.76 37.16 0.33 -0.52 16 22 C 0.46 4.10 2.67 37.16 0.10 4.19 16 23 F -0.18 -1.78 14.19 2.25 0.03 -1.75 16 24 F -0.18 -1.61 16.80 2.25 0.04 -1.57 16 25 F -0.18 -1.92 17.02 2.25 0.04 -1.89 16 26 C -0.11 -1.12 9.65 -39.64 -0.38 -1.50 16 27 C -0.06 -0.77 9.60 -39.17 -0.38 -1.15 16 28 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 29 H 0.07 1.55 5.06 -51.93 -0.26 1.28 16 30 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.27 8.13 8.73 -40.82 -0.36 7.78 16 32 H 0.15 2.08 7.61 -52.49 -0.40 1.68 16 33 H 0.14 1.33 5.88 -52.49 -0.31 1.02 16 34 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.07 0.34 7.80 -51.93 -0.41 -0.07 16 36 H 0.07 0.45 7.03 -51.92 -0.37 0.08 16 37 H 0.13 0.90 7.94 -52.48 -0.42 0.49 16 38 H 0.14 1.77 7.65 -52.48 -0.40 1.37 16 LS Contribution 331.15 15.07 4.99 4.99 Total: -1.00 -32.03 331.15 -5.70 -37.72 By element: Atomic # 1 Polarization: 3.43 SS G_CDS: -4.20 Total: -0.77 kcal Atomic # 6 Polarization: -8.64 SS G_CDS: -2.24 Total: -10.88 kcal Atomic # 7 Polarization: -26.92 SS G_CDS: 0.76 Total: -26.16 kcal Atomic # 8 Polarization: -19.44 SS G_CDS: -0.67 Total: -20.11 kcal Atomic # 9 Polarization: -5.32 SS G_CDS: 0.11 Total: -5.21 kcal Atomic # 14 Polarization: 24.87 SS G_CDS: -4.45 Total: 20.42 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -32.03 -5.70 -37.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835158785.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -188.280 kcal (2) G-P(sol) polarization free energy of solvation -32.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -220.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -226.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds