Wall clock time and date at job start Tue Mar 31 2020 11:00:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 120.00149 * 2 1 4 4 H 1.48503 * 109.47296 * 240.00287 * 3 2 1 5 5 H 1.48498 * 109.47081 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46951 * 120.00571 * 3 2 1 7 7 C 1.37883 * 119.99752 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99600 * 179.97438 * 7 2 1 9 9 C 1.50692 * 120.00235 * 359.97438 * 7 2 1 10 10 C 1.53040 * 109.46129 * 180.02562 * 9 7 2 11 11 C 1.53198 * 109.31084 * 178.62868 * 10 9 7 12 12 N 1.46920 * 108.77573 * 54.64111 * 11 10 9 13 13 C 1.34777 * 120.63260 * 126.36649 * 12 11 10 14 14 O 1.21591 * 119.99931 * 185.22432 * 13 12 11 15 15 N 1.34775 * 119.99811 * 5.22412 * 13 12 11 16 16 C 1.46502 * 119.99654 * 175.01554 * 15 13 12 17 17 C 1.53001 * 109.46885 * 180.02562 * 16 15 13 18 18 S 1.83692 * 110.81509 * 304.08946 * 17 16 15 19 19 C 1.83546 * 97.72201 * 157.41438 * 18 17 16 20 20 C 1.53279 * 107.34860 * 316.54642 * 19 18 17 21 21 S 1.81582 * 110.75249 * 29.45427 * 20 19 18 22 22 C 1.46931 * 118.73456 * 306.63753 * 12 11 10 23 23 C 1.52758 * 109.00675 * 53.31382 * 22 12 11 24 24 H 0.97001 * 119.99629 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.46255 * 299.97851 * 9 7 2 26 26 H 1.08997 * 109.49632 * 58.68008 * 10 9 7 27 27 H 1.08993 * 109.52823 * 298.59984 * 10 9 7 28 28 H 1.08998 * 109.58787 * 294.84534 * 11 10 9 29 29 H 1.09000 * 109.69755 * 174.49397 * 11 10 9 30 30 H 0.96995 * 120.00365 * 355.01475 * 15 13 12 31 31 H 1.09003 * 109.47365 * 60.00450 * 16 15 13 32 32 H 1.09004 * 109.47339 * 299.99804 * 16 15 13 33 33 H 1.09002 * 110.72167 * 180.70465 * 17 16 15 34 34 H 1.08998 * 109.86224 * 197.10462 * 19 18 17 35 35 H 1.08997 * 109.96955 * 76.05541 * 19 18 17 36 36 H 1.08997 * 109.23519 * 269.10795 * 20 19 18 37 37 H 1.09002 * 109.15796 * 149.75092 * 20 19 18 38 38 H 1.09010 * 109.58221 * 173.14498 * 22 12 11 39 39 H 1.08995 * 109.58992 * 293.57299 * 22 12 11 40 40 H 1.09008 * 109.56247 * 185.54986 * 23 22 12 41 41 H 1.09003 * 109.39120 * 65.51458 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1031 1.6963 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2458 -3.6622 -0.0005 11 6 1.4766 -4.9867 0.0341 12 7 0.5225 -5.0088 -1.0830 13 6 0.5124 -6.0344 -1.9573 14 8 -0.2155 -5.9966 -2.9305 15 7 1.3091 -7.1021 -1.7527 16 6 1.2197 -8.2636 -2.6411 17 6 2.2236 -9.3274 -2.1922 18 16 3.9241 -8.6355 -2.1306 19 6 4.6402 -9.8456 -0.9510 20 6 3.6142 -10.0548 0.1684 21 16 1.9255 -9.8098 -0.4525 22 6 -0.4163 -3.8884 -1.2324 23 6 0.3703 -2.5791 -1.2495 24 1 -0.4850 0.8401 0.0004 25 1 0.6251 -2.5571 0.8899 26 1 2.8881 -3.5915 0.8772 27 1 2.8563 -3.6195 -0.9024 28 1 0.9370 -5.0713 0.9773 29 1 2.1736 -5.8189 -0.0642 30 1 1.9417 -7.1014 -1.0175 31 1 1.4459 -7.9581 -3.6626 32 1 0.2114 -8.6757 -2.5999 33 1 2.1828 -10.1972 -2.8479 34 1 5.5678 -9.4527 -0.5348 35 1 4.8329 -10.7908 -1.4584 36 1 3.8083 -9.3432 0.9710 37 1 3.7103 -11.0687 0.5569 38 1 -0.9664 -3.9949 -2.1674 39 1 -1.1135 -3.8817 -0.3945 40 1 -0.3223 -1.7373 -1.2608 41 1 0.9980 -2.5456 -2.1401 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000852665945.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:01 Heat of formation + Delta-G solvation = -21.974348 kcal Electronic energy + Delta-G solvation = -22525.976270 eV Core-core repulsion = 19272.352966 eV Total energy + Delta-G solvation = -3253.623304 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 316.102 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -39.88129 -37.01826 -35.23367 -33.74357 -33.47409 -31.30460 -30.63270 -29.50174 -26.09677 -24.28819 -23.83374 -22.86793 -22.00377 -20.22515 -18.92137 -17.83447 -17.24993 -17.02730 -16.31681 -15.89355 -15.77260 -15.17559 -14.56622 -14.54781 -14.21451 -14.01243 -13.88897 -13.44032 -13.07455 -12.89289 -12.68471 -12.59269 -12.26770 -12.17665 -11.73008 -11.71096 -11.38143 -11.05891 -10.88216 -10.64027 -10.36654 -10.17238 -10.00102 -9.72112 -9.49537 -9.12128 -8.94170 -8.83973 -8.41851 -8.31534 -8.09484 -7.80170 -5.97120 -4.03692 0.74066 1.03007 1.26565 2.14389 3.04396 3.33091 3.38153 3.40508 3.63466 3.95369 4.08423 4.18307 4.27851 4.45050 4.64201 4.83053 4.92184 5.08194 5.30741 5.32529 5.43639 5.49241 5.85921 5.92484 6.13156 6.33351 6.50344 6.55743 6.65164 6.70038 6.89549 7.05658 7.22405 7.31810 7.56921 7.76389 7.99600 8.11939 8.39112 8.45908 8.99298 9.01649 9.60974 11.08205 Molecular weight = 316.10amu Principal moments of inertia in cm(-1) A = 0.021841 B = 0.003251 C = 0.003038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.677044 B = 8611.442835 C = 9214.710626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.062 3.938 3 Si 0.890 3.110 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.514 4.514 8 H 0.053 0.947 9 C 0.050 3.950 10 C -0.123 4.123 11 C 0.114 3.886 12 N -0.615 5.615 13 C 0.707 3.293 14 O -0.604 6.604 15 N -0.744 5.744 16 C 0.172 3.828 17 C -0.023 4.023 18 S -0.227 6.227 19 C -0.085 4.085 20 C -0.093 4.093 21 S -0.232 6.232 22 C 0.127 3.873 23 C -0.124 4.124 24 H 0.261 0.739 25 H 0.027 0.973 26 H 0.059 0.941 27 H 0.052 0.948 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.404 0.596 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.132 0.868 34 H 0.126 0.874 35 H 0.098 0.902 36 H 0.108 0.892 37 H 0.108 0.892 38 H 0.076 0.924 39 H 0.056 0.944 40 H 0.103 0.897 41 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.231 -22.592 -0.198 23.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.139 4.139 3 Si 0.718 3.282 4 H -0.204 1.204 5 H -0.213 1.213 6 H -0.204 1.204 7 C -0.552 4.552 8 H 0.072 0.928 9 C 0.032 3.968 10 C -0.161 4.161 11 C -0.009 4.009 12 N -0.351 5.351 13 C 0.409 3.591 14 O -0.484 6.484 15 N -0.406 5.406 16 C 0.044 3.956 17 C -0.262 4.262 18 S -0.001 6.001 19 C -0.235 4.235 20 C -0.243 4.243 21 S -0.008 6.008 22 C 0.005 3.995 23 C -0.162 4.162 24 H 0.071 0.929 25 H 0.045 0.955 26 H 0.078 0.922 27 H 0.071 0.929 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.244 0.756 31 H 0.105 0.895 32 H 0.105 0.895 33 H 0.150 0.850 34 H 0.144 0.856 35 H 0.117 0.883 36 H 0.126 0.874 37 H 0.126 0.874 38 H 0.094 0.906 39 H 0.074 0.926 40 H 0.121 0.879 41 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 6.045 -21.619 -0.887 22.466 hybrid contribution 1.581 -0.056 0.332 1.617 sum 7.626 -21.675 -0.555 22.984 Atomic orbital electron populations 1.69839 1.05833 1.26531 1.50693 1.24958 0.94848 0.98995 0.95123 0.86690 0.79628 0.83315 0.78529 1.20367 1.21329 1.20371 1.21158 0.92819 0.90657 1.50538 0.92842 1.18613 0.92577 0.91479 0.94173 1.22003 0.98923 0.94347 1.00859 1.21703 0.91174 0.98918 0.89129 1.47393 1.38141 1.21251 1.28355 1.15792 0.80616 0.79921 0.82800 1.90859 1.46081 1.81233 1.30241 1.45280 1.43773 1.16195 1.35315 1.20612 0.96830 0.83616 0.94514 1.26323 0.97044 1.04061 0.98804 1.88526 1.09262 1.41755 1.60535 1.24180 1.01840 1.01503 0.96006 1.23995 0.92142 1.07162 1.01050 1.87545 1.12322 1.90412 1.10485 1.21675 0.90948 0.85659 1.01213 1.21945 1.00111 0.94964 0.99212 0.92929 0.95487 0.92243 0.92921 0.91980 0.92172 0.75622 0.89473 0.89541 0.85017 0.85639 0.88335 0.87380 0.87360 0.90578 0.92587 0.87876 0.94400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.03 11.31 55.43 0.63 -24.40 16 2 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 3 Si 0.89 21.17 29.54 -169.99 -5.02 16.14 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.51 -13.85 8.56 -34.44 -0.29 -14.15 16 8 H 0.05 1.43 7.74 -52.48 -0.41 1.02 16 9 C 0.05 1.21 2.07 -91.73 -0.19 1.02 16 10 C -0.12 -2.45 5.30 -26.61 -0.14 -2.59 16 11 C 0.11 1.93 6.39 -3.71 -0.02 1.90 16 12 N -0.62 -11.68 2.98 -178.76 -0.53 -12.21 16 13 C 0.71 13.24 8.30 -86.92 -0.72 12.52 16 14 O -0.60 -13.21 15.77 5.29 0.08 -13.12 16 15 N -0.74 -10.74 4.91 -65.22 -0.32 -11.06 16 16 C 0.17 2.02 5.50 -4.04 -0.02 2.00 16 17 C -0.02 -0.21 3.90 37.16 0.14 -0.06 16 18 S -0.23 -2.13 21.46 -102.61 -2.20 -4.33 16 19 C -0.09 -0.48 7.01 37.30 0.26 -0.21 16 20 C -0.09 -0.54 6.79 37.30 0.25 -0.29 16 21 S -0.23 -2.10 21.46 -102.61 -2.20 -4.30 16 22 C 0.13 2.65 6.41 -3.93 -0.03 2.62 16 23 C -0.12 -2.94 5.14 -26.83 -0.14 -3.08 16 24 H 0.26 7.05 8.31 -40.82 -0.34 6.72 16 25 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 27 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 28 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 29 H 0.06 0.86 5.64 -51.93 -0.29 0.57 16 30 H 0.40 5.41 4.74 -40.82 -0.19 5.21 16 31 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.13 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.13 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.10 0.42 8.14 -51.93 -0.42 -0.01 16 36 H 0.11 0.61 8.14 -51.92 -0.42 0.19 16 37 H 0.11 0.45 8.14 -51.92 -0.42 0.03 16 38 H 0.08 1.63 7.00 -51.92 -0.36 1.26 16 39 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.10 2.71 6.03 -51.92 -0.31 2.40 16 41 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 344.71 15.07 5.19 5.19 Total: -1.00 -31.30 344.71 -11.56 -42.87 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -6.20 Total: 3.95 kcal Atomic # 6 Polarization: 2.27 SS G_CDS: -0.99 Total: 1.28 kcal Atomic # 7 Polarization: -47.46 SS G_CDS: -0.23 Total: -47.68 kcal Atomic # 8 Polarization: -13.21 SS G_CDS: 0.08 Total: -13.12 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.14 kcal Atomic # 16 Polarization: -4.23 SS G_CDS: -4.40 Total: -8.63 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.30 -11.56 -42.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852665945.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.893 kcal (2) G-P(sol) polarization free energy of solvation -31.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds