Wall clock time and date at job start Tue Mar 31 2020 11:00:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 120.00149 * 2 1 4 4 H 1.48503 * 109.47296 * 240.00287 * 3 2 1 5 5 H 1.48498 * 109.47081 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46951 * 120.00571 * 3 2 1 7 7 C 1.37883 * 119.99752 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99600 * 179.97438 * 7 2 1 9 9 C 1.50692 * 120.00235 * 359.97438 * 7 2 1 10 10 C 1.53040 * 109.46129 * 180.02562 * 9 7 2 11 11 C 1.53198 * 109.31084 * 178.62868 * 10 9 7 12 12 N 1.46920 * 108.77573 * 54.64111 * 11 10 9 13 13 C 1.34777 * 120.63260 * 126.36649 * 12 11 10 14 14 O 1.21591 * 119.99931 * 185.22432 * 13 12 11 15 15 N 1.34775 * 119.99811 * 5.22412 * 13 12 11 16 16 C 1.46502 * 119.99654 * 175.01554 * 15 13 12 17 17 C 1.53001 * 109.46885 * 180.02562 * 16 15 13 18 18 S 1.83692 * 110.81509 * 304.08946 * 17 16 15 19 19 C 1.83546 * 97.72201 * 157.41438 * 18 17 16 20 20 C 1.53279 * 107.34860 * 316.54642 * 19 18 17 21 21 S 1.81582 * 110.75249 * 29.45427 * 20 19 18 22 22 C 1.46931 * 118.73456 * 306.63753 * 12 11 10 23 23 C 1.52758 * 109.00675 * 53.31382 * 22 12 11 24 24 H 0.97001 * 119.99629 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.46255 * 299.97851 * 9 7 2 26 26 H 1.08997 * 109.49632 * 58.68008 * 10 9 7 27 27 H 1.08993 * 109.52823 * 298.59984 * 10 9 7 28 28 H 1.08998 * 109.58787 * 294.84534 * 11 10 9 29 29 H 1.09000 * 109.69755 * 174.49397 * 11 10 9 30 30 H 0.96995 * 120.00365 * 355.01475 * 15 13 12 31 31 H 1.09003 * 109.47365 * 60.00450 * 16 15 13 32 32 H 1.09004 * 109.47339 * 299.99804 * 16 15 13 33 33 H 1.09002 * 110.72167 * 180.70465 * 17 16 15 34 34 H 1.08998 * 109.86224 * 197.10462 * 19 18 17 35 35 H 1.08997 * 109.96955 * 76.05541 * 19 18 17 36 36 H 1.08997 * 109.23519 * 269.10795 * 20 19 18 37 37 H 1.09002 * 109.15796 * 149.75092 * 20 19 18 38 38 H 1.09010 * 109.58221 * 173.14498 * 22 12 11 39 39 H 1.08995 * 109.58992 * 293.57299 * 22 12 11 40 40 H 1.09008 * 109.56247 * 185.54986 * 23 22 12 41 41 H 1.09003 * 109.39120 * 65.51458 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1031 1.6963 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2458 -3.6622 -0.0005 11 6 1.4766 -4.9867 0.0341 12 7 0.5225 -5.0088 -1.0830 13 6 0.5124 -6.0344 -1.9573 14 8 -0.2155 -5.9966 -2.9305 15 7 1.3091 -7.1021 -1.7527 16 6 1.2197 -8.2636 -2.6411 17 6 2.2236 -9.3274 -2.1922 18 16 3.9241 -8.6355 -2.1306 19 6 4.6402 -9.8456 -0.9510 20 6 3.6142 -10.0548 0.1684 21 16 1.9255 -9.8098 -0.4525 22 6 -0.4163 -3.8884 -1.2324 23 6 0.3703 -2.5791 -1.2495 24 1 -0.4850 0.8401 0.0004 25 1 0.6251 -2.5571 0.8899 26 1 2.8881 -3.5915 0.8772 27 1 2.8563 -3.6195 -0.9024 28 1 0.9370 -5.0713 0.9773 29 1 2.1736 -5.8189 -0.0642 30 1 1.9417 -7.1014 -1.0175 31 1 1.4459 -7.9581 -3.6626 32 1 0.2114 -8.6757 -2.5999 33 1 2.1828 -10.1972 -2.8479 34 1 5.5678 -9.4527 -0.5348 35 1 4.8329 -10.7908 -1.4584 36 1 3.8083 -9.3432 0.9710 37 1 3.7103 -11.0687 0.5569 38 1 -0.9664 -3.9949 -2.1674 39 1 -1.1135 -3.8817 -0.3945 40 1 -0.3223 -1.7373 -1.2608 41 1 0.9980 -2.5456 -2.1401 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000852665945.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:00 Heat of formation + Delta-G solvation = -39.841905 kcal Electronic energy + Delta-G solvation = -22526.751066 eV Core-core repulsion = 19272.352966 eV Total energy + Delta-G solvation = -3254.398099 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 316.102 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.36735 -38.63378 -36.47779 -35.34458 -34.20320 -33.02534 -32.13200 -30.87960 -27.93982 -25.17014 -24.67103 -24.40757 -23.60652 -21.80540 -20.48183 -19.24738 -18.31311 -18.16281 -17.78369 -17.07772 -16.57741 -16.50793 -16.30711 -15.64014 -15.26330 -15.03524 -14.89300 -14.81786 -14.62066 -14.40715 -14.16389 -13.86191 -13.44902 -13.31245 -12.99689 -12.95325 -12.77560 -12.50214 -12.45897 -12.14906 -11.96320 -11.90694 -11.41536 -11.33418 -10.92869 -10.80410 -10.77684 -10.38470 -10.21110 -9.37952 -9.10770 -8.76845 -8.05228 -6.19157 0.11972 0.38863 0.69665 1.43420 1.44561 1.51725 1.61080 1.69857 2.15001 2.45678 2.95461 3.21211 3.26416 3.52211 3.84437 3.95466 4.10935 4.25554 4.32520 4.36901 4.47005 4.49189 4.54922 4.57021 4.61479 4.69134 4.74789 4.92002 4.99881 5.21553 5.24547 5.41346 5.48654 5.51364 5.67367 6.00051 6.06849 6.14060 6.40822 6.91793 6.99476 7.48675 7.55534 8.98078 Molecular weight = 316.10amu Principal moments of inertia in cm(-1) A = 0.021841 B = 0.003251 C = 0.003038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.677044 B = 8611.442835 C = 9214.710626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.014 3.986 3 Si 0.950 3.050 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.269 1.269 7 C -0.534 4.534 8 H 0.052 0.948 9 C 0.047 3.953 10 C -0.114 4.114 11 C 0.121 3.879 12 N -0.620 5.620 13 C 0.703 3.297 14 O -0.639 6.639 15 N -0.726 5.726 16 C 0.168 3.832 17 C -0.004 4.004 18 S -0.285 6.285 19 C -0.067 4.067 20 C -0.081 4.081 21 S -0.273 6.273 22 C 0.139 3.861 23 C -0.111 4.111 24 H 0.260 0.740 25 H 0.006 0.994 26 H 0.074 0.926 27 H 0.042 0.958 28 H 0.076 0.924 29 H 0.092 0.908 30 H 0.410 0.590 31 H 0.080 0.920 32 H 0.086 0.914 33 H 0.154 0.846 34 H 0.143 0.857 35 H 0.117 0.883 36 H 0.113 0.887 37 H 0.132 0.868 38 H 0.067 0.933 39 H 0.062 0.938 40 H 0.074 0.926 41 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.163 -24.559 0.810 26.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.185 4.185 3 Si 0.776 3.224 4 H -0.202 1.202 5 H -0.211 1.211 6 H -0.194 1.194 7 C -0.572 4.572 8 H 0.070 0.930 9 C 0.028 3.972 10 C -0.152 4.152 11 C -0.002 4.002 12 N -0.356 5.356 13 C 0.405 3.595 14 O -0.522 6.522 15 N -0.387 5.387 16 C 0.041 3.959 17 C -0.243 4.243 18 S -0.059 6.059 19 C -0.216 4.216 20 C -0.232 4.232 21 S -0.049 6.049 22 C 0.016 3.984 23 C -0.150 4.150 24 H 0.069 0.931 25 H 0.024 0.976 26 H 0.093 0.907 27 H 0.061 0.939 28 H 0.094 0.906 29 H 0.110 0.890 30 H 0.252 0.748 31 H 0.098 0.902 32 H 0.104 0.896 33 H 0.171 0.829 34 H 0.161 0.839 35 H 0.136 0.864 36 H 0.132 0.868 37 H 0.150 0.850 38 H 0.086 0.914 39 H 0.080 0.920 40 H 0.092 0.908 41 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 8.016 -23.627 0.143 24.950 hybrid contribution 1.029 0.508 0.045 1.149 sum 9.046 -23.118 0.188 24.826 Atomic orbital electron populations 1.69974 1.07042 1.27126 1.51309 1.25703 0.95648 1.02205 0.94930 0.85735 0.78460 0.79481 0.78693 1.20179 1.21137 1.19425 1.21558 0.93042 0.92182 1.50409 0.92972 1.18587 0.93077 0.92449 0.93065 1.21854 0.98137 0.94212 1.01038 1.21752 0.91150 0.98281 0.88983 1.47350 1.38261 1.20888 1.29102 1.15947 0.80826 0.80557 0.82183 1.90832 1.47703 1.82006 1.31667 1.45176 1.42418 1.15618 1.35509 1.20723 0.97962 0.83396 0.93793 1.26168 0.95551 1.03385 0.99168 1.88729 1.10391 1.44388 1.62408 1.24279 1.01758 1.00927 0.94628 1.24076 0.89495 1.08774 1.00835 1.87702 1.15848 1.90418 1.10888 1.21344 0.90921 0.85069 1.01053 1.21708 0.99368 0.95676 0.98290 0.93056 0.97588 0.90745 0.93923 0.90610 0.88954 0.74844 0.90232 0.89642 0.82851 0.83868 0.86422 0.86847 0.84958 0.91445 0.91965 0.90774 0.96318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.55 11.31 21.45 0.24 -52.31 16 2 C 0.01 0.76 5.30 84.66 0.45 1.21 16 3 Si 0.95 43.62 29.54 68.60 2.03 45.64 16 4 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 5 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 6 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 7 C -0.53 -29.09 8.56 25.60 0.22 -28.87 16 8 H 0.05 2.78 7.74 -2.91 -0.02 2.76 16 9 C 0.05 2.29 2.07 -11.52 -0.02 2.26 16 10 C -0.11 -4.44 5.30 30.67 0.16 -4.27 16 11 C 0.12 3.87 6.39 86.37 0.55 4.42 16 12 N -0.62 -23.24 2.98 -837.73 -2.49 -25.73 16 13 C 0.70 26.04 8.30 179.06 1.49 27.53 16 14 O -0.64 -28.22 15.77 -4.00 -0.06 -28.29 16 15 N -0.73 -20.13 4.91 -478.52 -2.35 -22.48 16 16 C 0.17 3.79 5.50 86.38 0.48 4.27 16 17 C 0.00 -0.06 3.90 71.98 0.28 0.22 16 18 S -0.28 -4.75 21.46 -46.49 -1.00 -5.75 16 19 C -0.07 -0.49 7.01 72.08 0.51 0.01 16 20 C -0.08 -0.65 6.79 72.08 0.49 -0.16 16 21 S -0.27 -4.27 21.46 -46.49 -1.00 -5.27 16 22 C 0.14 5.91 6.41 86.22 0.55 6.46 16 23 C -0.11 -5.47 5.14 30.53 0.16 -5.31 16 24 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 25 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 26 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 27 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 28 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 29 H 0.09 2.38 5.64 -2.39 -0.01 2.37 16 30 H 0.41 10.17 4.74 -92.71 -0.44 9.73 16 31 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.15 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.14 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.12 0.49 8.14 -2.39 -0.02 0.47 16 36 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.13 0.52 8.14 -2.39 -0.02 0.50 16 38 H 0.07 2.97 7.00 -2.38 -0.02 2.95 16 39 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 40 H 0.07 4.07 6.03 -2.38 -0.01 4.06 16 41 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 Total: -1.00 -69.10 344.71 1.26 -67.84 By element: Atomic # 1 Polarization: 17.99 SS G_CDS: 0.59 Total: 18.58 kcal Atomic # 6 Polarization: 2.46 SS G_CDS: 5.30 Total: 7.76 kcal Atomic # 7 Polarization: -95.92 SS G_CDS: -4.60 Total: -100.52 kcal Atomic # 8 Polarization: -28.22 SS G_CDS: -0.06 Total: -28.29 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.64 kcal Atomic # 16 Polarization: -9.02 SS G_CDS: -2.00 Total: -11.02 kcal Total: -69.10 1.26 -67.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852665945.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.998 kcal (2) G-P(sol) polarization free energy of solvation -69.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds