Wall clock time and date at job start Tue Mar 31 2020 11:05:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38390 * 119.85313 * 2 1 4 4 C 1.37915 * 120.15394 * 180.21422 * 3 2 1 5 5 C 1.39647 * 119.84666 * 359.51205 * 4 3 2 6 6 C 1.47730 * 120.15362 * 180.23411 * 5 4 3 7 7 O 1.21467 * 120.00319 * 179.97438 * 6 5 4 8 8 O 1.34712 * 119.99320 * 0.02562 * 6 5 4 9 9 C 1.45207 * 116.99595 * 180.02562 * 8 6 5 10 10 C 1.53002 * 109.46980 * 179.97438 * 9 8 6 11 11 C 1.52994 * 109.46866 * 179.97438 * 10 9 8 12 12 C 1.50708 * 109.46834 * 179.97438 * 11 10 9 13 13 H 1.07991 * 120.00072 * 0.02562 * 12 11 10 14 14 C 1.37880 * 119.99470 * 180.02562 * 12 11 10 15 15 N 1.31509 * 120.00397 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 119.99553 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.47297 * 59.99735 * 16 14 12 18 18 H 1.48494 * 109.47429 * 179.97438 * 16 14 12 19 19 H 1.48507 * 109.47186 * 300.00145 * 16 14 12 20 20 C 1.39610 * 119.70341 * 0.25156 * 5 4 3 21 21 C 1.37970 * 119.84452 * 0.02562 * 20 5 4 22 22 C 1.50697 * 119.92349 * 179.97438 * 21 20 5 23 23 F 1.39898 * 109.47353 * 359.97438 * 22 21 20 24 24 F 1.39894 * 109.47484 * 119.99847 * 22 21 20 25 25 F 1.39908 * 109.46723 * 239.99475 * 22 21 20 26 26 H 1.09002 * 109.47269 * 270.25179 * 1 2 3 27 27 H 1.08997 * 109.47200 * 30.25145 * 1 2 3 28 28 H 1.08997 * 109.47460 * 150.25190 * 1 2 3 29 29 H 1.07998 * 119.92047 * 0.02562 * 3 2 1 30 30 H 1.08002 * 120.08024 * 179.79393 * 4 3 2 31 31 H 1.09002 * 109.46825 * 299.99523 * 9 8 6 32 32 H 1.08998 * 109.47279 * 59.99767 * 9 8 6 33 33 H 1.08999 * 109.47479 * 300.00448 * 10 9 8 34 34 H 1.09006 * 109.46754 * 60.00312 * 10 9 8 35 35 H 1.08991 * 109.47653 * 300.00027 * 11 10 9 36 36 H 1.08998 * 109.47009 * 60.00494 * 11 10 9 37 37 H 0.97005 * 120.00102 * 179.97438 * 15 14 12 38 38 H 1.07996 * 120.08279 * 180.02562 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.2003 0.0000 4 6 3.5750 1.2075 -0.0045 5 6 4.2764 0.0000 0.0013 6 6 5.7536 -0.0002 0.0018 7 8 6.3610 -1.0521 0.0073 8 8 6.4272 1.1665 -0.0028 9 6 7.8773 1.0904 -0.0026 10 6 8.4621 2.5043 -0.0088 11 6 9.9899 2.4241 -0.0079 12 6 10.5660 3.8167 -0.0147 13 1 9.9081 4.6732 -0.0188 14 6 11.9329 3.9973 -0.0157 15 7 12.7340 2.9543 -0.0113 16 14 12.6469 5.7234 -0.0234 17 1 12.1894 6.4538 1.1860 18 1 14.1298 5.6457 -0.0226 19 1 12.1890 6.4431 -1.2390 20 6 3.5752 -1.2073 0.0063 21 6 2.1955 -1.2000 0.0049 22 6 1.4369 -2.5020 0.0096 23 9 2.3417 -3.5690 0.0145 24 9 0.6312 -2.5682 1.1514 25 9 0.6333 -2.5777 -1.1331 26 1 -0.3634 0.0045 1.0277 27 1 -0.3633 0.8877 -0.5177 28 1 -0.3634 -0.8922 -0.5099 29 1 1.6522 2.1334 0.0004 30 1 4.1114 2.1449 -0.0078 31 1 8.2132 0.5618 0.8896 32 1 8.2131 0.5548 -0.8904 33 1 8.1260 3.0326 -0.9010 34 1 8.1262 3.0403 0.8790 35 1 10.3256 1.8961 0.8845 36 1 10.3261 1.8880 -0.8954 37 1 13.6956 3.0814 -0.0123 38 1 4.1114 -2.1447 0.0112 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000860168761.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:50 Heat of formation + Delta-G solvation = -231.370129 kcal Electronic energy + Delta-G solvation = -25224.390055 eV Core-core repulsion = 20809.340355 eV Total energy + Delta-G solvation = -4415.049700 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.107 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.57796 -48.06880 -47.99953 -40.72330 -39.42112 -36.54148 -34.10031 -33.62595 -32.38585 -31.70704 -28.55004 -27.19513 -26.19253 -23.90471 -22.79058 -22.67540 -20.98172 -20.40234 -18.91223 -18.86882 -18.68798 -17.21632 -16.73311 -16.38778 -16.24412 -15.73492 -15.54758 -15.13777 -14.88609 -14.50770 -14.49310 -14.40012 -14.29708 -14.17521 -14.14275 -13.94843 -13.40210 -13.02577 -12.73302 -12.64592 -12.28499 -12.12070 -12.10785 -11.91548 -11.61612 -10.98479 -10.76820 -10.69018 -10.52145 -10.45594 -9.79092 -9.76354 -9.55539 -9.38160 -9.21133 -8.41151 -6.05932 -4.09349 0.15380 0.55127 2.20899 2.23600 2.68169 3.18075 3.30073 3.30503 3.35176 3.37344 3.64419 4.02073 4.13384 4.22248 4.40413 4.51829 4.58620 4.76162 5.00953 5.04057 5.05255 5.27888 5.29960 5.48742 5.51905 5.54468 5.57644 5.73181 5.80099 5.95315 6.14750 6.37704 6.48437 6.74967 6.92738 7.56658 7.67526 7.76322 7.91870 8.32504 8.96622 9.55044 11.05440 Molecular weight = 316.11amu Principal moments of inertia in cm(-1) A = 0.033308 B = 0.002120 C = 0.002021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.431476 B =13207.122167 C =13851.853097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.003 4.003 3 C -0.135 4.135 4 C -0.024 4.024 5 C -0.127 4.127 6 C 0.504 3.496 7 O -0.503 6.503 8 O -0.352 6.352 9 C 0.069 3.931 10 C -0.109 4.109 11 C 0.024 3.976 12 C -0.523 4.523 13 H 0.057 0.943 14 C 0.057 3.943 15 N -0.894 5.894 16 Si 0.896 3.104 17 H -0.276 1.276 18 H -0.287 1.287 19 H -0.276 1.276 20 C -0.007 4.007 21 C -0.203 4.203 22 C 0.514 3.486 23 F -0.173 7.173 24 F -0.174 7.174 25 F -0.174 7.174 26 H 0.088 0.912 27 H 0.083 0.917 28 H 0.078 0.922 29 H 0.145 0.855 30 H 0.153 0.847 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.020 0.980 36 H 0.020 0.980 37 H 0.262 0.738 38 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.121 -7.744 0.066 29.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.003 4.003 3 C -0.153 4.153 4 C -0.042 4.042 5 C -0.128 4.128 6 C 0.348 3.652 7 O -0.393 6.393 8 O -0.268 6.268 9 C -0.004 4.004 10 C -0.146 4.146 11 C -0.013 4.013 12 C -0.561 4.561 13 H 0.075 0.925 14 C -0.144 4.144 15 N -0.533 5.533 16 Si 0.723 3.277 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.202 1.202 20 C -0.025 4.025 21 C -0.205 4.205 22 C 0.460 3.540 23 F -0.155 7.155 24 F -0.156 7.156 25 F -0.155 7.155 26 H 0.106 0.894 27 H 0.102 0.898 28 H 0.097 0.903 29 H 0.163 0.837 30 H 0.171 0.829 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.038 0.962 36 H 0.038 0.962 37 H 0.072 0.928 38 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -27.716 -8.125 0.068 28.883 hybrid contribution 0.593 0.536 -0.001 0.800 sum -27.123 -7.589 0.067 28.165 Atomic orbital electron populations 1.21227 0.89792 1.04759 1.03983 1.19943 0.96902 0.91724 0.91771 1.21089 0.93873 0.97668 1.02643 1.21828 0.94230 0.98364 0.89784 1.19129 0.90446 0.94124 1.09070 1.20888 0.88191 0.82655 0.73459 1.90850 1.70120 1.32827 1.45488 1.86521 1.24489 1.32667 1.83152 1.23593 0.72777 1.01571 1.02446 1.21779 0.99282 0.91553 1.02015 1.19049 0.86733 0.97780 0.97741 1.21122 0.91535 0.92197 1.51269 0.92472 1.25030 0.97247 0.97012 0.95157 1.69951 1.03622 1.29403 1.50339 0.86601 0.77868 0.84534 0.78663 1.20175 1.21253 1.20169 1.21084 0.91894 0.99131 0.90393 1.19699 0.94290 0.92183 1.14278 1.18111 0.77480 0.84590 0.73861 1.93199 1.67055 1.59007 1.96192 1.93221 1.74576 1.96751 1.51022 1.93182 1.74683 1.96571 1.51112 0.89377 0.89823 0.90295 0.83729 0.82941 0.91244 0.91250 0.92063 0.92071 0.96192 0.96194 0.92792 0.82873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.75 8.97 36.00 0.32 -0.43 16 2 C 0.00 -0.02 5.85 -104.53 -0.61 -0.64 16 3 C -0.13 -0.95 9.68 -39.64 -0.38 -1.34 16 4 C -0.02 -0.22 9.62 -39.17 -0.38 -0.59 16 5 C -0.13 -1.48 5.87 -104.98 -0.62 -2.09 16 6 C 0.50 7.60 7.90 34.61 0.27 7.88 16 7 O -0.50 -8.91 16.14 -19.24 -0.31 -9.22 16 8 O -0.35 -5.57 9.47 -40.52 -0.38 -5.96 16 9 C 0.07 1.23 5.48 37.16 0.20 1.43 16 10 C -0.11 -2.17 5.53 -26.73 -0.15 -2.32 16 11 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 12 C -0.52 -14.51 9.11 -34.44 -0.31 -14.83 16 13 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 14 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 15 N -0.89 -26.61 13.29 55.43 0.74 -25.87 16 16 Si 0.90 21.32 29.54 -169.99 -5.02 16.30 16 17 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 18 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 19 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 20 C -0.01 -0.07 8.98 -39.17 -0.35 -0.43 16 21 C -0.20 -1.89 5.37 -104.68 -0.56 -2.45 16 22 C 0.51 4.71 2.81 36.00 0.10 4.81 16 23 F -0.17 -1.76 15.96 2.25 0.04 -1.72 16 24 F -0.17 -1.56 16.41 2.25 0.04 -1.53 16 25 F -0.17 -1.56 15.32 2.25 0.03 -1.52 16 26 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.08 0.30 8.08 -51.93 -0.42 -0.12 16 28 H 0.08 0.46 5.49 -51.93 -0.29 0.18 16 29 H 0.14 0.61 8.06 -52.49 -0.42 0.19 16 30 H 0.15 1.24 7.61 -52.49 -0.40 0.84 16 31 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 32 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 33 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.26 7.37 8.31 -40.82 -0.34 7.04 16 38 H 0.15 1.70 6.74 -52.49 -0.35 1.34 16 LS Contribution 342.06 15.07 5.15 5.15 Total: -1.00 -31.07 342.06 -6.80 -37.87 By element: Atomic # 1 Polarization: -0.11 SS G_CDS: -4.38 Total: -4.49 kcal Atomic # 6 Polarization: -6.31 SS G_CDS: -2.70 Total: -9.01 kcal Atomic # 7 Polarization: -26.61 SS G_CDS: 0.74 Total: -25.87 kcal Atomic # 8 Polarization: -14.49 SS G_CDS: -0.69 Total: -15.18 kcal Atomic # 9 Polarization: -4.88 SS G_CDS: 0.11 Total: -4.77 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.07 -6.80 -37.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000860168761.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -193.504 kcal (2) G-P(sol) polarization free energy of solvation -31.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -224.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -231.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds