Wall clock time and date at job start Tue Mar 31 2020 11:05:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38390 * 119.85313 * 2 1 4 4 C 1.37915 * 120.15394 * 180.21422 * 3 2 1 5 5 C 1.39647 * 119.84666 * 359.51205 * 4 3 2 6 6 C 1.47730 * 120.15362 * 180.23411 * 5 4 3 7 7 O 1.21467 * 120.00319 * 179.97438 * 6 5 4 8 8 O 1.34712 * 119.99320 * 0.02562 * 6 5 4 9 9 C 1.45207 * 116.99595 * 180.02562 * 8 6 5 10 10 C 1.53002 * 109.46980 * 179.97438 * 9 8 6 11 11 C 1.52994 * 109.46866 * 179.97438 * 10 9 8 12 12 C 1.50708 * 109.46834 * 179.97438 * 11 10 9 13 13 H 1.07991 * 120.00072 * 0.02562 * 12 11 10 14 14 C 1.37880 * 119.99470 * 180.02562 * 12 11 10 15 15 N 1.31509 * 120.00397 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 119.99553 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.47297 * 59.99735 * 16 14 12 18 18 H 1.48494 * 109.47429 * 179.97438 * 16 14 12 19 19 H 1.48507 * 109.47186 * 300.00145 * 16 14 12 20 20 C 1.39610 * 119.70341 * 0.25156 * 5 4 3 21 21 C 1.37970 * 119.84452 * 0.02562 * 20 5 4 22 22 C 1.50697 * 119.92349 * 179.97438 * 21 20 5 23 23 F 1.39898 * 109.47353 * 359.97438 * 22 21 20 24 24 F 1.39894 * 109.47484 * 119.99847 * 22 21 20 25 25 F 1.39908 * 109.46723 * 239.99475 * 22 21 20 26 26 H 1.09002 * 109.47269 * 270.25179 * 1 2 3 27 27 H 1.08997 * 109.47200 * 30.25145 * 1 2 3 28 28 H 1.08997 * 109.47460 * 150.25190 * 1 2 3 29 29 H 1.07998 * 119.92047 * 0.02562 * 3 2 1 30 30 H 1.08002 * 120.08024 * 179.79393 * 4 3 2 31 31 H 1.09002 * 109.46825 * 299.99523 * 9 8 6 32 32 H 1.08998 * 109.47279 * 59.99767 * 9 8 6 33 33 H 1.08999 * 109.47479 * 300.00448 * 10 9 8 34 34 H 1.09006 * 109.46754 * 60.00312 * 10 9 8 35 35 H 1.08991 * 109.47653 * 300.00027 * 11 10 9 36 36 H 1.08998 * 109.47009 * 60.00494 * 11 10 9 37 37 H 0.97005 * 120.00102 * 179.97438 * 15 14 12 38 38 H 1.07996 * 120.08279 * 180.02562 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.2003 0.0000 4 6 3.5750 1.2075 -0.0045 5 6 4.2764 0.0000 0.0013 6 6 5.7536 -0.0002 0.0018 7 8 6.3610 -1.0521 0.0073 8 8 6.4272 1.1665 -0.0028 9 6 7.8773 1.0904 -0.0026 10 6 8.4621 2.5043 -0.0088 11 6 9.9899 2.4241 -0.0079 12 6 10.5660 3.8167 -0.0147 13 1 9.9081 4.6732 -0.0188 14 6 11.9329 3.9973 -0.0157 15 7 12.7340 2.9543 -0.0113 16 14 12.6469 5.7234 -0.0234 17 1 12.1894 6.4538 1.1860 18 1 14.1298 5.6457 -0.0226 19 1 12.1890 6.4431 -1.2390 20 6 3.5752 -1.2073 0.0063 21 6 2.1955 -1.2000 0.0049 22 6 1.4369 -2.5020 0.0096 23 9 2.3417 -3.5690 0.0145 24 9 0.6312 -2.5682 1.1514 25 9 0.6333 -2.5777 -1.1331 26 1 -0.3634 0.0045 1.0277 27 1 -0.3633 0.8877 -0.5177 28 1 -0.3634 -0.8922 -0.5099 29 1 1.6522 2.1334 0.0004 30 1 4.1114 2.1449 -0.0078 31 1 8.2132 0.5618 0.8896 32 1 8.2131 0.5548 -0.8904 33 1 8.1260 3.0326 -0.9010 34 1 8.1262 3.0403 0.8790 35 1 10.3256 1.8961 0.8845 36 1 10.3261 1.8880 -0.8954 37 1 13.6956 3.0814 -0.0123 38 1 4.1114 -2.1447 0.0112 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000860168761.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:49 Heat of formation + Delta-G solvation = -246.486952 kcal Electronic energy + Delta-G solvation = -25225.045570 eV Core-core repulsion = 20809.340355 eV Total energy + Delta-G solvation = -4415.705215 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.107 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -51.31314 -48.82652 -48.71778 -41.79732 -40.32618 -37.88400 -35.95343 -34.44455 -33.61324 -33.06042 -29.51262 -28.66475 -27.09197 -25.38078 -23.96313 -23.42137 -22.18106 -21.92873 -19.81607 -19.59749 -19.51242 -18.69210 -18.12070 -17.73436 -17.51163 -16.55423 -16.51603 -16.30149 -15.85531 -15.69719 -15.60396 -15.22904 -15.15873 -14.91971 -14.88566 -14.69852 -14.64834 -14.14298 -13.92753 -13.83844 -13.69991 -13.18829 -13.12637 -12.87319 -12.79645 -12.53698 -12.42919 -12.24445 -12.10362 -11.89944 -11.47366 -11.43606 -11.25653 -10.56317 -10.47597 -10.09111 -8.21226 -6.32902 -0.63074 -0.17393 1.25067 1.34632 1.42702 1.45476 1.53402 1.61833 2.35094 2.41860 2.57683 2.89910 3.12822 3.30212 3.37215 3.58494 3.65858 3.89013 3.98910 4.03727 4.05390 4.28031 4.39922 4.48711 4.64760 4.71378 4.74428 4.79705 4.95117 5.02249 5.07675 5.12432 5.18775 5.32110 5.49692 5.52573 5.64094 5.80513 6.18942 6.53258 6.83205 7.36746 8.90812 Molecular weight = 316.11amu Principal moments of inertia in cm(-1) A = 0.033308 B = 0.002120 C = 0.002021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.431476 B =13207.122167 C =13851.853097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.006 3.994 3 C -0.122 4.122 4 C -0.020 4.020 5 C -0.149 4.149 6 C 0.504 3.496 7 O -0.539 6.539 8 O -0.346 6.346 9 C 0.078 3.922 10 C -0.092 4.092 11 C 0.025 3.975 12 C -0.543 4.543 13 H 0.067 0.933 14 C -0.002 4.002 15 N -0.935 5.935 16 Si 0.969 3.031 17 H -0.265 1.265 18 H -0.286 1.286 19 H -0.265 1.265 20 C -0.015 4.015 21 C -0.211 4.211 22 C 0.516 3.484 23 F -0.183 7.183 24 F -0.172 7.172 25 F -0.172 7.172 26 H 0.100 0.900 27 H 0.109 0.891 28 H 0.072 0.928 29 H 0.184 0.816 30 H 0.164 0.836 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.070 0.930 34 H 0.070 0.930 35 H -0.004 1.004 36 H -0.004 1.004 37 H 0.264 0.736 38 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.721 -5.478 0.072 31.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.006 3.994 3 C -0.139 4.139 4 C -0.038 4.038 5 C -0.150 4.150 6 C 0.351 3.649 7 O -0.431 6.431 8 O -0.262 6.262 9 C 0.004 3.996 10 C -0.130 4.130 11 C -0.012 4.012 12 C -0.581 4.581 13 H 0.085 0.915 14 C -0.200 4.200 15 N -0.575 5.575 16 Si 0.793 3.207 17 H -0.190 1.190 18 H -0.211 1.211 19 H -0.190 1.190 20 C -0.034 4.034 21 C -0.212 4.212 22 C 0.462 3.538 23 F -0.164 7.164 24 F -0.153 7.153 25 F -0.153 7.153 26 H 0.119 0.881 27 H 0.127 0.873 28 H 0.091 0.909 29 H 0.201 0.799 30 H 0.181 0.819 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.014 0.986 36 H 0.014 0.986 37 H 0.073 0.927 38 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -30.350 -5.855 0.073 30.910 hybrid contribution 1.272 -0.227 -0.001 1.292 sum -29.078 -6.082 0.072 29.707 Atomic orbital electron populations 1.21341 0.87721 1.05764 1.05023 1.20349 0.98365 0.91138 0.89565 1.21482 0.92921 0.98921 1.00579 1.22012 0.95274 0.97536 0.88979 1.18965 0.88100 0.95653 1.12254 1.21539 0.89557 0.81705 0.72126 1.90830 1.71075 1.33773 1.47388 1.86492 1.22999 1.33263 1.83410 1.23220 0.74298 1.00031 1.02004 1.21458 0.95686 0.92962 1.02861 1.18939 0.90435 0.96431 0.95431 1.21601 0.92193 0.93400 1.50866 0.91452 1.26024 0.97821 1.01534 0.94630 1.70096 1.03949 1.31982 1.51454 0.85442 0.76853 0.79066 0.79339 1.18969 1.21117 1.18958 1.20999 0.92696 0.98494 0.91164 1.19759 0.93614 0.93018 1.14857 1.18096 0.77388 0.84364 0.73960 1.93182 1.67461 1.59514 1.96243 1.93223 1.74466 1.96730 1.50906 1.93186 1.74574 1.96559 1.50998 0.88127 0.87278 0.90882 0.79870 0.81886 0.91803 0.91810 0.91122 0.91129 0.98561 0.98568 0.92709 0.84205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.99 8.97 71.24 0.64 -0.35 16 2 C 0.01 0.08 5.85 -19.80 -0.12 -0.04 16 3 C -0.12 -1.26 9.68 22.23 0.22 -1.04 16 4 C -0.02 -0.32 9.62 22.53 0.22 -0.10 16 5 C -0.15 -3.40 5.87 -20.10 -0.12 -3.52 16 6 C 0.50 15.48 7.90 70.33 0.56 16.04 16 7 O -0.54 -19.95 16.14 19.94 0.32 -19.63 16 8 O -0.35 -10.87 9.47 -56.22 -0.53 -11.41 16 9 C 0.08 2.83 5.48 71.98 0.39 3.22 16 10 C -0.09 -3.68 5.53 30.59 0.17 -3.51 16 11 C 0.02 1.29 4.97 29.85 0.15 1.44 16 12 C -0.54 -30.22 9.11 25.60 0.23 -29.99 16 13 H 0.07 3.52 7.74 -2.92 -0.02 3.50 16 14 C 0.00 -0.13 5.46 84.66 0.46 0.33 16 15 N -0.93 -56.70 13.29 21.45 0.28 -56.42 16 16 Si 0.97 43.46 29.54 68.60 2.03 45.48 16 17 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 18 H -0.29 -12.64 7.11 99.48 0.71 -11.94 16 19 H -0.26 -11.32 7.11 99.48 0.71 -10.62 16 20 C -0.02 -0.33 8.98 22.54 0.20 -0.13 16 21 C -0.21 -3.68 5.37 -19.90 -0.11 -3.78 16 22 C 0.52 9.03 2.81 71.23 0.20 9.23 16 23 F -0.18 -3.75 15.96 44.97 0.72 -3.03 16 24 F -0.17 -2.86 16.41 44.97 0.74 -2.12 16 25 F -0.17 -2.87 15.32 44.97 0.69 -2.18 16 26 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 27 H 0.11 0.25 8.08 -2.39 -0.02 0.23 16 28 H 0.07 0.64 5.49 -2.39 -0.01 0.63 16 29 H 0.18 0.52 8.06 -2.91 -0.02 0.49 16 30 H 0.16 2.22 7.61 -2.91 -0.02 2.20 16 31 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 32 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 33 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 34 H 0.07 2.68 8.14 -2.38 -0.02 2.66 16 35 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 36 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 37 H 0.26 15.09 8.31 -92.70 -0.77 14.32 16 38 H 0.14 3.32 6.74 -2.91 -0.02 3.30 16 Total: -1.00 -68.38 342.06 8.43 -59.95 By element: Atomic # 1 Polarization: 0.47 SS G_CDS: 1.09 Total: 1.56 kcal Atomic # 6 Polarization: -15.30 SS G_CDS: 3.09 Total: -12.21 kcal Atomic # 7 Polarization: -56.70 SS G_CDS: 0.28 Total: -56.42 kcal Atomic # 8 Polarization: -30.82 SS G_CDS: -0.21 Total: -31.03 kcal Atomic # 9 Polarization: -9.47 SS G_CDS: 2.15 Total: -7.33 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.48 kcal Total: -68.38 8.43 -59.95 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000860168761.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -186.542 kcal (2) G-P(sol) polarization free energy of solvation -68.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -254.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -246.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds