Wall clock time and date at job start Tue Mar 31 2020 11:24:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52991 * 109.47178 * 2 1 4 4 H 1.09003 * 109.47080 * 304.50565 * 3 2 1 5 5 C 1.50699 * 109.47364 * 184.51169 * 3 2 1 6 6 H 1.07998 * 120.00239 * 245.63112 * 5 3 2 7 7 C 1.37885 * 120.00126 * 65.61845 * 5 3 2 8 8 N 1.31506 * 120.00448 * 195.77348 * 7 5 3 9 9 Si 1.86801 * 119.99559 * 15.77925 * 7 5 3 10 10 H 1.48502 * 109.46809 * 179.97438 * 9 7 5 11 11 H 1.48501 * 109.47411 * 299.99603 * 9 7 5 12 12 H 1.48504 * 109.47302 * 60.00066 * 9 7 5 13 13 O 1.45202 * 109.47519 * 64.50839 * 3 2 1 14 14 C 1.34703 * 117.00005 * 270.00094 * 13 3 2 15 15 O 1.21465 * 120.00191 * 0.02562 * 14 13 3 16 16 C 1.47732 * 119.99950 * 179.97438 * 14 13 3 17 17 C 1.39650 * 120.14337 * 359.97438 * 16 14 13 18 18 C 1.37928 * 119.83978 * 179.97438 * 17 16 14 19 19 C 1.38386 * 120.15664 * 0.02562 * 18 17 16 20 20 C 1.50700 * 119.85182 * 180.02562 * 19 18 17 21 21 C 1.38347 * 120.30032 * 359.97438 * 19 18 17 22 22 C 1.50700 * 119.92444 * 180.02562 * 21 19 18 23 23 F 1.39902 * 109.47200 * 180.02562 * 22 21 19 24 24 F 1.39894 * 109.47208 * 300.00187 * 22 21 19 25 25 F 1.39898 * 109.47216 * 60.00787 * 22 21 19 26 26 C 1.37972 * 120.15185 * 359.79252 * 21 19 18 27 27 H 1.09005 * 109.47387 * 300.00153 * 1 2 3 28 28 H 1.09005 * 109.47269 * 60.00199 * 1 2 3 29 29 H 1.09001 * 109.47481 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46897 * 239.99885 * 2 1 3 31 31 H 1.08996 * 109.46881 * 120.00217 * 2 1 3 32 32 H 0.97001 * 119.99749 * 354.88986 * 8 7 5 33 33 H 1.07990 * 120.08488 * 0.02562 * 17 16 14 34 34 H 1.08006 * 119.92210 * 180.02562 * 18 17 16 35 35 H 1.08998 * 109.47058 * 89.99951 * 20 19 18 36 36 H 1.09003 * 109.46990 * 210.00108 * 20 19 18 37 37 H 1.09006 * 109.46783 * 329.99616 * 20 19 18 38 38 H 1.07993 * 120.07723 * 180.25479 * 26 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6122 1.9790 -0.8469 5 6 3.5428 1.4439 -0.1118 6 1 4.1449 1.8079 0.7076 7 6 4.1493 0.9804 -1.2601 8 7 5.4314 0.6881 -1.2546 9 14 3.1495 0.7677 -2.8236 10 1 4.0283 0.2605 -3.9079 11 1 2.0515 -0.2024 -2.5811 12 1 2.5740 2.0765 -3.2251 13 8 1.6459 2.0952 1.2357 14 6 0.4585 2.7313 1.2396 15 8 -0.2291 2.7400 0.2383 16 6 -0.0080 3.4173 2.4619 17 6 0.7794 3.4079 3.6153 18 6 0.3381 4.0508 4.7529 19 6 -0.8821 4.7038 4.7533 20 6 -1.3573 5.4046 5.9999 21 6 -1.6671 4.7171 3.6142 22 6 -2.9941 5.4312 3.6240 23 9 -3.6000 5.3065 2.3692 24 9 -3.8215 4.8645 4.5992 25 9 -2.7928 6.7853 3.9125 26 6 -1.2356 4.0820 2.4678 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 5.9665 0.8680 -0.4658 33 1 1.7320 2.8991 3.6162 34 1 0.9462 4.0447 5.6455 35 1 -1.0096 6.4376 5.9910 36 1 -2.4467 5.3882 6.0330 37 1 -0.9594 4.8948 6.8774 38 1 -1.8475 4.0966 1.5781 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000860694673.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:40 Heat of formation + Delta-G solvation = -223.258991 kcal Electronic energy + Delta-G solvation = -26640.275993 eV Core-core repulsion = 22225.578018 eV Total energy + Delta-G solvation = -4414.697975 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.107 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.43254 -47.92238 -47.85541 -40.39082 -39.13158 -36.09013 -33.81459 -33.22174 -32.15259 -31.91302 -28.32912 -27.52024 -26.07922 -23.42937 -22.49312 -22.42479 -21.13162 -19.88319 -18.72560 -18.71468 -18.56261 -17.63750 -16.78054 -16.27885 -15.74581 -15.45517 -15.32735 -14.97493 -14.71695 -14.34713 -14.26643 -14.07867 -14.00754 -13.98925 -13.83518 -13.33454 -12.92424 -12.85477 -12.71374 -12.57352 -12.51271 -12.21423 -11.92743 -11.71526 -11.41892 -11.33362 -10.96797 -10.56855 -10.14460 -10.01175 -9.69443 -9.58881 -9.53798 -9.13256 -8.90345 -8.43579 -6.69092 -4.30794 0.42940 0.78978 2.39258 2.60790 3.21958 3.29097 3.36692 3.48420 3.51960 3.52902 3.83455 4.18224 4.32115 4.35699 4.43327 4.78161 4.92296 5.02448 5.05698 5.19855 5.24049 5.33927 5.49814 5.67377 5.80999 5.86105 5.92799 5.98701 6.02725 6.09686 6.37225 6.41215 6.59283 6.73185 6.76078 7.10977 7.27988 7.72977 8.17358 8.35200 8.76270 9.37407 10.73976 Molecular weight = 316.11amu Principal moments of inertia in cm(-1) A = 0.023919 B = 0.003378 C = 0.003183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.359636 B = 8285.863172 C = 8794.842561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.149 4.149 3 C 0.202 3.798 4 H 0.040 0.960 5 C -0.607 4.607 6 H 0.069 0.931 7 C 0.041 3.959 8 N -0.893 5.893 9 Si 1.035 2.965 10 H -0.279 1.279 11 H -0.268 1.268 12 H -0.278 1.278 13 O -0.337 6.337 14 C 0.496 3.504 15 O -0.509 6.509 16 C -0.121 4.121 17 C -0.025 4.025 18 C -0.136 4.136 19 C -0.009 4.009 20 C -0.139 4.139 21 C -0.204 4.204 22 C 0.514 3.486 23 F -0.174 7.174 24 F -0.175 7.175 25 F -0.175 7.175 26 C -0.010 4.010 27 H 0.040 0.960 28 H 0.055 0.945 29 H 0.042 0.958 30 H 0.081 0.919 31 H 0.062 0.938 32 H 0.272 0.728 33 H 0.152 0.848 34 H 0.143 0.857 35 H 0.086 0.914 36 H 0.077 0.923 37 H 0.081 0.919 38 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.800 8.191 13.972 21.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.187 4.187 3 C 0.148 3.852 4 H 0.058 0.942 5 C -0.645 4.645 6 H 0.087 0.913 7 C -0.166 4.166 8 N -0.526 5.526 9 Si 0.862 3.138 10 H -0.204 1.204 11 H -0.194 1.194 12 H -0.204 1.204 13 O -0.252 6.252 14 C 0.340 3.660 15 O -0.400 6.400 16 C -0.122 4.122 17 C -0.043 4.043 18 C -0.153 4.153 19 C -0.009 4.009 20 C -0.195 4.195 21 C -0.206 4.206 22 C 0.460 3.540 23 F -0.155 7.155 24 F -0.157 7.157 25 F -0.157 7.157 26 C -0.028 4.028 27 H 0.059 0.941 28 H 0.074 0.926 29 H 0.061 0.939 30 H 0.099 0.901 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.170 0.830 34 H 0.160 0.840 35 H 0.104 0.896 36 H 0.096 0.904 37 H 0.100 0.900 38 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -14.877 7.640 12.081 20.631 hybrid contribution -0.281 0.640 1.483 1.640 sum -15.158 8.280 13.565 21.962 Atomic orbital electron populations 1.21917 0.97399 0.99966 1.01460 1.22455 0.93828 0.99271 1.03131 1.20995 0.96279 0.88076 0.79819 0.94219 1.21926 0.88483 1.49366 1.04724 0.91305 1.25655 0.97356 0.92564 1.01000 1.70866 1.07181 1.40633 1.33903 0.84198 0.75640 0.77882 0.76069 1.20391 1.19418 1.20363 1.86573 1.33249 1.62112 1.43294 1.20850 0.81113 0.76963 0.87076 1.90785 1.55997 1.58747 1.34517 1.19314 0.96058 1.02917 0.93898 1.21858 0.98969 0.92754 0.90742 1.21066 0.95667 0.99291 0.99317 1.19878 0.93295 0.93815 0.93960 1.21198 1.02871 1.00979 0.94484 1.19673 0.95775 1.07933 0.97192 1.18133 0.85117 0.77134 0.73629 1.93194 1.85040 1.95703 1.41575 1.93168 1.74540 1.84840 1.63117 1.93214 1.95113 1.34085 1.93261 1.21081 0.94220 0.90396 0.97150 0.94066 0.92568 0.93936 0.90115 0.91910 0.91805 0.83015 0.83962 0.89568 0.90431 0.90002 0.82993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.92 8.56 37.16 0.32 -2.60 16 2 C -0.15 -3.31 5.32 -26.74 -0.14 -3.45 16 3 C 0.20 4.95 1.84 -27.89 -0.05 4.90 16 4 H 0.04 1.02 5.85 -51.93 -0.30 0.72 16 5 C -0.61 -16.90 9.17 -34.44 -0.32 -17.21 16 6 H 0.07 2.04 8.06 -52.49 -0.42 1.62 16 7 C 0.04 1.14 5.33 -17.82 -0.10 1.05 16 8 N -0.89 -26.45 13.69 55.43 0.76 -25.69 16 9 Si 1.04 24.54 26.27 -169.99 -4.47 20.07 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 11 H -0.27 -5.84 5.61 56.52 0.32 -5.52 16 12 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 13 O -0.34 -7.46 9.05 -40.50 -0.37 -7.83 16 14 C 0.50 9.75 6.33 34.61 0.22 9.97 16 15 O -0.51 -10.91 13.53 -19.24 -0.26 -11.17 16 16 C -0.12 -1.86 5.87 -104.98 -0.62 -2.47 16 17 C -0.03 -0.32 9.62 -39.17 -0.38 -0.70 16 18 C -0.14 -1.34 9.68 -39.64 -0.38 -1.73 16 19 C -0.01 -0.09 5.85 -104.53 -0.61 -0.70 16 20 C -0.14 -1.01 8.97 36.01 0.32 -0.69 16 21 C -0.20 -2.40 5.37 -104.68 -0.56 -2.96 16 22 C 0.51 5.71 2.81 36.01 0.10 5.81 16 23 F -0.17 -2.09 15.96 2.25 0.04 -2.05 16 24 F -0.18 -1.86 15.32 2.25 0.03 -1.83 16 25 F -0.18 -1.89 16.42 2.25 0.04 -1.85 16 26 C -0.01 -0.14 8.98 -39.17 -0.35 -0.49 16 27 H 0.04 0.78 6.07 -51.93 -0.32 0.47 16 28 H 0.06 1.12 7.76 -51.93 -0.40 0.71 16 29 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.08 1.83 4.67 -51.93 -0.24 1.59 16 31 H 0.06 1.37 8.14 -51.93 -0.42 0.94 16 32 H 0.27 7.97 8.73 -40.82 -0.36 7.62 16 33 H 0.15 1.91 7.61 -52.49 -0.40 1.51 16 34 H 0.14 0.98 8.06 -52.48 -0.42 0.56 16 35 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.08 0.59 5.49 -51.93 -0.29 0.30 16 37 H 0.08 0.45 8.08 -51.93 -0.42 0.03 16 38 H 0.15 2.11 6.74 -52.49 -0.35 1.76 16 LS Contribution 325.31 15.07 4.90 4.90 Total: -1.00 -30.22 325.31 -5.94 -36.16 By element: Atomic # 1 Polarization: 4.65 SS G_CDS: -4.07 Total: 0.57 kcal Atomic # 6 Polarization: -8.74 SS G_CDS: -2.55 Total: -11.29 kcal Atomic # 7 Polarization: -26.45 SS G_CDS: 0.76 Total: -25.69 kcal Atomic # 8 Polarization: -18.37 SS G_CDS: -0.63 Total: -19.00 kcal Atomic # 9 Polarization: -5.84 SS G_CDS: 0.11 Total: -5.73 kcal Atomic # 14 Polarization: 24.54 SS G_CDS: -4.47 Total: 20.07 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -30.22 -5.94 -36.16 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000860694673.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -187.102 kcal (2) G-P(sol) polarization free energy of solvation -30.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -217.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -223.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds