Wall clock time and date at job start Tue Mar 31 2020 11:24:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52991 * 109.47178 * 2 1 4 4 H 1.09003 * 109.47080 * 304.50565 * 3 2 1 5 5 C 1.50699 * 109.47364 * 184.51169 * 3 2 1 6 6 H 1.07998 * 120.00239 * 245.63112 * 5 3 2 7 7 C 1.37885 * 120.00126 * 65.61845 * 5 3 2 8 8 N 1.31506 * 120.00448 * 195.77348 * 7 5 3 9 9 Si 1.86801 * 119.99559 * 15.77925 * 7 5 3 10 10 H 1.48502 * 109.46809 * 179.97438 * 9 7 5 11 11 H 1.48501 * 109.47411 * 299.99603 * 9 7 5 12 12 H 1.48504 * 109.47302 * 60.00066 * 9 7 5 13 13 O 1.45202 * 109.47519 * 64.50839 * 3 2 1 14 14 C 1.34703 * 117.00005 * 270.00094 * 13 3 2 15 15 O 1.21465 * 120.00191 * 0.02562 * 14 13 3 16 16 C 1.47732 * 119.99950 * 179.97438 * 14 13 3 17 17 C 1.39650 * 120.14337 * 359.97438 * 16 14 13 18 18 C 1.37928 * 119.83978 * 179.97438 * 17 16 14 19 19 C 1.38386 * 120.15664 * 0.02562 * 18 17 16 20 20 C 1.50700 * 119.85182 * 180.02562 * 19 18 17 21 21 C 1.38347 * 120.30032 * 359.97438 * 19 18 17 22 22 C 1.50700 * 119.92444 * 180.02562 * 21 19 18 23 23 F 1.39902 * 109.47200 * 180.02562 * 22 21 19 24 24 F 1.39894 * 109.47208 * 300.00187 * 22 21 19 25 25 F 1.39898 * 109.47216 * 60.00787 * 22 21 19 26 26 C 1.37972 * 120.15185 * 359.79252 * 21 19 18 27 27 H 1.09005 * 109.47387 * 300.00153 * 1 2 3 28 28 H 1.09005 * 109.47269 * 60.00199 * 1 2 3 29 29 H 1.09001 * 109.47481 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46897 * 239.99885 * 2 1 3 31 31 H 1.08996 * 109.46881 * 120.00217 * 2 1 3 32 32 H 0.97001 * 119.99749 * 354.88986 * 8 7 5 33 33 H 1.07990 * 120.08488 * 0.02562 * 17 16 14 34 34 H 1.08006 * 119.92210 * 180.02562 * 18 17 16 35 35 H 1.08998 * 109.47058 * 89.99951 * 20 19 18 36 36 H 1.09003 * 109.46990 * 210.00108 * 20 19 18 37 37 H 1.09006 * 109.46783 * 329.99616 * 20 19 18 38 38 H 1.07993 * 120.07723 * 180.25479 * 26 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6122 1.9790 -0.8469 5 6 3.5428 1.4439 -0.1118 6 1 4.1449 1.8079 0.7076 7 6 4.1493 0.9804 -1.2601 8 7 5.4314 0.6881 -1.2546 9 14 3.1495 0.7677 -2.8236 10 1 4.0283 0.2605 -3.9079 11 1 2.0515 -0.2024 -2.5811 12 1 2.5740 2.0765 -3.2251 13 8 1.6459 2.0952 1.2357 14 6 0.4585 2.7313 1.2396 15 8 -0.2291 2.7400 0.2383 16 6 -0.0080 3.4173 2.4619 17 6 0.7794 3.4079 3.6153 18 6 0.3381 4.0508 4.7529 19 6 -0.8821 4.7038 4.7533 20 6 -1.3573 5.4046 5.9999 21 6 -1.6671 4.7171 3.6142 22 6 -2.9941 5.4312 3.6240 23 9 -3.6000 5.3065 2.3692 24 9 -3.8215 4.8645 4.5992 25 9 -2.7928 6.7853 3.9125 26 6 -1.2356 4.0820 2.4678 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 5.9665 0.8680 -0.4658 33 1 1.7320 2.8991 3.6162 34 1 0.9462 4.0447 5.6455 35 1 -1.0096 6.4376 5.9910 36 1 -2.4467 5.3882 6.0330 37 1 -0.9594 4.8948 6.8774 38 1 -1.8475 4.0966 1.5781 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000860694673.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:40 Heat of formation + Delta-G solvation = -239.085308 kcal Electronic energy + Delta-G solvation = -26640.962273 eV Core-core repulsion = 22225.578018 eV Total energy + Delta-G solvation = -4415.384255 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.107 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -51.31426 -48.82250 -48.71759 -41.77199 -40.35317 -37.78385 -35.61395 -34.40478 -33.77325 -33.07575 -29.72022 -28.89077 -27.08927 -24.83480 -24.09823 -23.42657 -22.49607 -21.48729 -20.17333 -19.61688 -19.59677 -19.39024 -18.26597 -17.49221 -17.33453 -16.55444 -16.40173 -15.88850 -15.79796 -15.58314 -15.22509 -15.12825 -15.04436 -14.91224 -14.88638 -14.80950 -14.64223 -14.55391 -14.19780 -13.80869 -13.52246 -13.19747 -13.12079 -13.07841 -12.85024 -12.71832 -12.42918 -12.26813 -11.95416 -11.69125 -11.57092 -11.33041 -10.89135 -10.59173 -10.49087 -10.08571 -8.94521 -6.57179 -0.60563 -0.18158 1.34969 1.38760 1.45228 1.46322 1.63984 1.82664 2.34073 2.36925 2.57057 2.89520 2.91329 3.30438 3.47132 3.59157 3.69817 3.88305 4.05571 4.14535 4.21387 4.23678 4.37873 4.47603 4.56792 4.63157 4.70338 4.84848 4.97363 5.03206 5.04569 5.07556 5.10719 5.16700 5.37291 5.41171 5.50895 5.78340 5.91766 6.36723 6.79076 7.19830 8.48178 Molecular weight = 316.11amu Principal moments of inertia in cm(-1) A = 0.023919 B = 0.003378 C = 0.003183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.359636 B = 8285.863172 C = 8794.842561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.146 4.146 3 C 0.203 3.797 4 H 0.029 0.971 5 C -0.616 4.616 6 H 0.034 0.966 7 C 0.000 4.000 8 N -0.919 5.919 9 Si 1.067 2.933 10 H -0.274 1.274 11 H -0.236 1.236 12 H -0.271 1.271 13 O -0.348 6.348 14 C 0.494 3.506 15 O -0.533 6.533 16 C -0.148 4.148 17 C -0.028 4.028 18 C -0.121 4.121 19 C 0.005 3.995 20 C -0.140 4.140 21 C -0.210 4.210 22 C 0.519 3.481 23 F -0.181 7.181 24 F -0.170 7.170 25 F -0.171 7.171 26 C -0.014 4.014 27 H 0.038 0.962 28 H 0.050 0.950 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.062 0.938 32 H 0.259 0.741 33 H 0.148 0.852 34 H 0.182 0.818 35 H 0.100 0.900 36 H 0.075 0.925 37 H 0.108 0.892 38 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.699 8.599 15.726 24.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.183 4.183 3 C 0.148 3.852 4 H 0.047 0.953 5 C -0.653 4.653 6 H 0.053 0.947 7 C -0.201 4.201 8 N -0.553 5.553 9 Si 0.887 3.113 10 H -0.199 1.199 11 H -0.160 1.160 12 H -0.196 1.196 13 O -0.264 6.264 14 C 0.340 3.660 15 O -0.426 6.426 16 C -0.149 4.149 17 C -0.046 4.046 18 C -0.138 4.138 19 C 0.005 3.995 20 C -0.196 4.196 21 C -0.211 4.211 22 C 0.465 3.535 23 F -0.163 7.163 24 F -0.151 7.151 25 F -0.153 7.153 26 C -0.032 4.032 27 H 0.057 0.943 28 H 0.069 0.931 29 H 0.092 0.908 30 H 0.095 0.905 31 H 0.080 0.920 32 H 0.069 0.931 33 H 0.166 0.834 34 H 0.199 0.801 35 H 0.119 0.881 36 H 0.094 0.906 37 H 0.127 0.873 38 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -16.792 8.055 13.871 23.222 hybrid contribution 0.297 0.642 1.127 1.330 sum -16.495 8.698 14.998 23.930 Atomic orbital electron populations 1.21823 0.95011 1.01860 1.01134 1.22338 0.95888 0.97191 1.02919 1.20736 0.94080 0.89752 0.80600 0.95289 1.22069 0.90516 1.48920 1.03816 0.94734 1.26937 0.97494 0.91787 1.03862 1.70972 1.08164 1.42669 1.33496 0.83824 0.75548 0.79104 0.72814 1.19870 1.15996 1.19625 1.86540 1.35069 1.62827 1.41988 1.21553 0.79838 0.76221 0.88394 1.90752 1.56294 1.59691 1.35815 1.19093 0.97633 1.05088 0.93061 1.21927 0.98591 0.93192 0.90940 1.21435 0.95692 0.97354 0.99349 1.20327 0.92616 0.92277 0.94323 1.21332 1.02893 1.01665 0.93706 1.19780 0.96368 1.07816 0.97139 1.18005 0.84825 0.77221 0.73467 1.93183 1.85148 1.95753 1.42194 1.93181 1.74356 1.84788 1.62814 1.93223 1.95082 1.33753 1.93199 1.20988 0.93623 0.90805 0.97805 0.94256 0.93090 0.90842 0.90467 0.91970 0.93106 0.83414 0.80057 0.88124 0.90591 0.87325 0.83930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.27 8.56 71.98 0.62 -4.66 16 2 C -0.15 -6.38 5.32 30.59 0.16 -6.22 16 3 C 0.20 10.09 1.84 29.84 0.05 10.14 16 4 H 0.03 1.52 5.85 -2.39 -0.01 1.50 16 5 C -0.62 -35.40 9.17 25.60 0.23 -35.17 16 6 H 0.03 2.16 8.06 -2.91 -0.02 2.14 16 7 C 0.00 -0.01 5.33 84.66 0.45 0.45 16 8 N -0.92 -55.91 13.69 21.45 0.29 -55.61 16 9 Si 1.07 49.20 26.27 68.60 1.80 51.00 16 10 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 11 H -0.24 -9.61 5.61 99.48 0.56 -9.06 16 12 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 13 O -0.35 -15.82 9.05 -56.13 -0.51 -16.33 16 14 C 0.49 19.78 6.33 70.33 0.45 20.22 16 15 O -0.53 -23.24 13.53 19.95 0.27 -22.97 16 16 C -0.15 -4.53 5.87 -20.10 -0.12 -4.65 16 17 C -0.03 -0.69 9.62 22.54 0.22 -0.47 16 18 C -0.12 -2.00 9.68 22.23 0.22 -1.78 16 19 C 0.00 0.08 5.85 -19.80 -0.12 -0.03 16 20 C -0.14 -1.43 8.97 71.24 0.64 -0.79 16 21 C -0.21 -4.53 5.37 -19.90 -0.11 -4.64 16 22 C 0.52 10.56 2.81 71.24 0.20 10.76 16 23 F -0.18 -4.20 15.96 44.97 0.72 -3.48 16 24 F -0.17 -3.22 15.32 44.97 0.69 -2.53 16 25 F -0.17 -3.30 16.42 44.97 0.74 -2.56 16 26 C -0.01 -0.38 8.98 22.54 0.20 -0.17 16 27 H 0.04 1.46 6.07 -2.38 -0.01 1.45 16 28 H 0.05 1.95 7.76 -2.38 -0.02 1.93 16 29 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 30 H 0.08 3.41 4.67 -2.39 -0.01 3.39 16 31 H 0.06 2.69 8.14 -2.39 -0.02 2.67 16 32 H 0.26 15.91 8.73 -92.71 -0.81 15.10 16 33 H 0.15 3.67 7.61 -2.92 -0.02 3.65 16 34 H 0.18 1.60 8.06 -2.91 -0.02 1.57 16 35 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.08 0.86 5.49 -2.39 -0.01 0.85 16 37 H 0.11 0.60 8.08 -2.38 -0.02 0.58 16 38 H 0.14 4.04 6.74 -2.91 -0.02 4.02 16 Total: -1.00 -67.69 325.31 8.03 -59.67 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: 0.93 Total: 9.81 kcal Atomic # 6 Polarization: -20.10 SS G_CDS: 3.10 Total: -17.00 kcal Atomic # 7 Polarization: -55.91 SS G_CDS: 0.29 Total: -55.61 kcal Atomic # 8 Polarization: -39.06 SS G_CDS: -0.24 Total: -39.30 kcal Atomic # 9 Polarization: -10.71 SS G_CDS: 2.15 Total: -8.56 kcal Atomic # 14 Polarization: 49.20 SS G_CDS: 1.80 Total: 51.00 kcal Total: -67.69 8.03 -59.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000860694673.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -179.417 kcal (2) G-P(sol) polarization free energy of solvation -67.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -247.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -239.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds