Wall clock time and date at job start Tue Mar 31 2020 11:40:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47312 * 2 1 4 4 C 1.53001 * 109.47287 * 239.99933 * 2 1 3 5 5 C 1.50702 * 109.47212 * 65.00247 * 4 2 1 6 6 O 1.20827 * 119.99615 * 359.97438 * 5 4 2 7 7 O 1.34265 * 120.00253 * 180.02562 * 5 4 2 8 8 C 1.35922 * 116.99926 * 175.01327 * 7 5 4 9 9 C 1.38824 * 120.01726 * 255.01287 * 8 7 5 10 10 C 1.38187 * 120.08143 * 179.72148 * 9 8 7 11 11 C 1.38151 * 120.12319 * 0.55662 * 10 9 8 12 12 C 1.38894 * 120.04001 * 359.71936 * 11 10 9 13 13 O 1.35751 * 120.04101 * 179.97438 * 12 11 10 14 14 C 1.34829 * 117.00151 * 185.61985 * 13 12 11 15 15 H 1.07998 * 120.00083 * 354.94490 * 14 13 12 16 16 C 1.38654 * 120.00050 * 174.94065 * 14 13 12 17 17 N 1.31560 * 119.99859 * 180.02562 * 16 14 13 18 18 Si 1.86802 * 120.00187 * 0.02562 * 16 14 13 19 19 H 1.48499 * 109.46962 * 89.99667 * 18 16 14 20 20 H 1.48498 * 109.46901 * 210.00053 * 18 16 14 21 21 H 1.48501 * 109.46698 * 329.99866 * 18 16 14 22 22 C 1.38568 * 120.02465 * 75.29114 * 8 7 5 23 23 C 1.50698 * 109.47245 * 119.99761 * 2 1 3 24 24 C 1.34518 * 125.79393 * 239.71456 * 23 2 1 25 25 C 1.41384 * 106.83840 * 179.88855 * 24 23 2 26 26 C 1.34507 * 106.84346 * 0.37339 * 25 24 23 27 27 O 1.34303 * 125.78585 * 60.02482 * 23 2 1 28 28 H 1.08993 * 109.46938 * 300.00397 * 1 2 3 29 29 H 1.08994 * 109.47177 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47176 * 59.99976 * 1 2 3 31 31 H 1.09004 * 109.47615 * 184.99888 * 4 2 1 32 32 H 1.08998 * 109.46993 * 305.00363 * 4 2 1 33 33 H 1.08008 * 119.95740 * 0.02562 * 9 8 7 34 34 H 1.08004 * 119.93977 * 180.25415 * 10 9 8 35 35 H 1.08000 * 119.98326 * 179.70034 * 11 10 9 36 36 H 0.96998 * 120.00139 * 180.02562 * 17 16 14 37 37 H 1.08001 * 120.06337 * 359.97438 * 22 8 7 38 38 H 1.08000 * 126.57478 * 0.02852 * 24 23 2 39 39 H 1.07998 * 126.57475 * 180.16297 * 25 24 23 40 40 H 1.08000 * 125.78859 * 179.74767 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4766 6 8 1.0134 1.0831 -2.3637 7 8 1.9832 -0.3902 -3.6956 8 6 1.5045 0.3014 -4.7632 9 6 0.4615 -0.2193 -5.5170 10 6 -0.0300 0.4854 -6.5993 11 6 0.5222 1.7046 -6.9416 12 6 1.5697 2.2277 -6.1944 13 8 2.1127 3.4255 -6.5310 14 6 3.1998 3.8211 -5.8383 15 1 3.5509 3.2337 -5.0029 16 6 3.8668 4.9819 -6.1987 17 7 4.9278 5.3676 -5.5232 18 14 3.2591 5.9983 -7.6435 19 1 2.2798 7.0058 -7.1628 20 1 4.4086 6.6897 -8.2805 21 1 2.6059 5.1070 -8.6356 22 6 2.0610 1.5240 -5.1035 23 6 2.0323 -0.7103 1.2305 24 6 2.8134 -0.1735 2.1851 25 6 3.0386 -1.1851 3.1468 26 6 2.3886 -2.2819 2.7182 27 8 1.7809 -1.9886 1.5570 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5139 -0.8900 31 1 3.1263 -0.7995 -1.2056 32 1 1.6053 -1.7198 -1.2952 33 1 0.0305 -1.1742 -5.2543 34 1 -0.8443 0.0800 -7.1817 35 1 0.1395 2.2511 -7.7908 36 1 5.3943 6.1799 -5.7750 37 1 2.8752 1.9288 -4.5207 38 1 3.1933 0.8371 2.2127 39 1 3.6234 -1.0953 4.0503 40 1 2.3606 -3.2367 3.2222 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000860831513.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:13 Heat of formation + Delta-G solvation = -80.771759 kcal Electronic energy + Delta-G solvation = -25260.862128 eV Core-core repulsion = 21394.199604 eV Total energy + Delta-G solvation = -3866.662524 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.119 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.53129 -42.42568 -40.74701 -39.00752 -37.51034 -36.24721 -34.51142 -33.85592 -31.63219 -30.94214 -30.01732 -29.08844 -27.36898 -25.14333 -23.72764 -23.17695 -22.69360 -21.98023 -20.82352 -20.03616 -19.76206 -18.71609 -17.93840 -17.78591 -17.41393 -16.99082 -16.89435 -16.40884 -15.87426 -15.77262 -15.61202 -15.41849 -14.97007 -14.62074 -14.36319 -14.20988 -14.15835 -13.74103 -13.67227 -13.48317 -13.20495 -13.06863 -12.82185 -12.61528 -12.53947 -12.43161 -12.13145 -12.11313 -11.92731 -11.70805 -11.44926 -10.96585 -10.85034 -9.83999 -9.40754 -9.25043 -8.55653 -6.30835 0.10366 0.49434 0.78050 1.00109 1.29419 1.34710 1.50138 1.62211 1.76674 2.08857 2.24673 2.67702 2.91535 3.05429 3.39958 3.53116 3.82389 3.88224 3.98932 4.12271 4.16434 4.26362 4.27849 4.28894 4.48687 4.50692 4.53852 4.71808 4.80562 4.87122 4.88955 5.00523 5.06223 5.14722 5.22945 5.26409 5.35551 5.42586 5.50653 5.59933 5.64007 5.79017 6.05868 6.20735 6.70081 6.76885 7.45732 8.56170 Molecular weight = 316.12amu Principal moments of inertia in cm(-1) A = 0.016163 B = 0.003016 C = 0.002645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.951910 B = 9282.077328 C =10585.120866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.006 3.994 3 H 0.097 0.903 4 C -0.097 4.097 5 C 0.455 3.545 6 O -0.514 6.514 7 O -0.297 6.297 8 C 0.109 3.891 9 C -0.183 4.183 10 C -0.048 4.048 11 C -0.183 4.183 12 C 0.132 3.868 13 O -0.235 6.235 14 C -0.405 4.405 15 H 0.071 0.929 16 C 0.011 3.989 17 N -0.921 5.921 18 Si 0.976 3.024 19 H -0.265 1.265 20 H -0.265 1.265 21 H -0.257 1.257 22 C -0.243 4.243 23 C -0.017 4.017 24 C -0.220 4.220 25 C -0.229 4.229 26 C -0.036 4.036 27 O -0.182 6.182 28 H 0.065 0.935 29 H 0.071 0.929 30 H 0.062 0.938 31 H 0.125 0.875 32 H 0.139 0.861 33 H 0.159 0.841 34 H 0.181 0.819 35 H 0.145 0.855 36 H 0.287 0.713 37 H 0.100 0.900 38 H 0.150 0.850 39 H 0.166 0.834 40 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.554 -17.523 11.831 22.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.013 4.013 3 H 0.115 0.885 4 C -0.134 4.134 5 C 0.300 3.700 6 O -0.401 6.401 7 O -0.212 6.212 8 C 0.068 3.932 9 C -0.201 4.201 10 C -0.066 4.066 11 C -0.202 4.202 12 C 0.083 3.917 13 O -0.142 6.142 14 C -0.481 4.481 15 H 0.088 0.912 16 C -0.188 4.188 17 N -0.561 5.561 18 Si 0.797 3.203 19 H -0.190 1.190 20 H -0.189 1.189 21 H -0.181 1.181 22 C -0.263 4.263 23 C -0.066 4.066 24 C -0.239 4.239 25 C -0.248 4.248 26 C -0.103 4.103 27 O -0.079 6.079 28 H 0.084 0.916 29 H 0.090 0.910 30 H 0.081 0.919 31 H 0.143 0.857 32 H 0.157 0.843 33 H 0.177 0.823 34 H 0.199 0.801 35 H 0.163 0.837 36 H 0.096 0.904 37 H 0.118 0.882 38 H 0.167 0.833 39 H 0.184 0.816 40 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -8.801 -17.068 11.551 22.410 hybrid contribution 0.845 1.153 0.168 1.440 sum -7.956 -15.915 11.719 21.306 Atomic orbital electron populations 1.21943 0.92728 1.03092 1.03054 1.19464 0.97494 0.97758 0.86546 0.88489 1.21592 1.05523 1.00536 0.85724 1.24763 0.75904 0.84439 0.84854 1.90703 1.37779 1.25021 1.86548 1.84535 1.68200 1.54324 1.14161 1.18461 0.95609 0.91148 0.88014 1.21177 0.96751 1.03151 0.99046 1.21148 0.98470 0.91757 0.95234 1.20785 0.98212 0.98840 1.02364 1.19479 0.93912 0.85145 0.93204 1.83523 1.41926 1.31415 1.57307 1.20621 1.04118 1.10227 1.13136 0.91187 1.25370 0.94682 0.97410 1.01320 1.69737 1.19182 1.25355 1.41877 0.85143 0.78439 0.78318 0.78353 1.19007 1.18945 1.18065 1.21247 1.05357 0.97687 1.02016 1.22070 1.02452 0.83215 0.98911 1.21935 1.03443 1.02142 0.96402 1.22153 1.06305 0.93445 1.02915 1.24826 0.97505 1.02050 0.85871 1.83990 1.59931 1.27562 1.36383 0.91611 0.90987 0.91938 0.85684 0.84268 0.82345 0.80142 0.83702 0.90363 0.88173 0.83266 0.81611 0.74352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.31 8.92 71.98 0.64 -2.67 16 2 C 0.01 0.13 2.44 -11.54 -0.03 0.10 16 3 H 0.10 2.44 7.91 -2.39 -0.02 2.43 16 4 C -0.10 -2.10 5.27 29.85 0.16 -1.95 16 5 C 0.46 14.61 7.54 71.24 0.54 15.15 16 6 O -0.51 -20.19 13.40 21.96 0.29 -19.89 16 7 O -0.30 -10.39 10.03 4.56 0.05 -10.34 16 8 C 0.11 4.28 5.18 22.49 0.12 4.40 16 9 C -0.18 -5.69 9.98 22.40 0.22 -5.46 16 10 C -0.05 -1.40 10.03 22.24 0.22 -1.18 16 11 C -0.18 -6.80 9.99 22.41 0.22 -6.58 16 12 C 0.13 6.40 6.65 22.56 0.15 6.55 16 13 O -0.23 -13.04 8.58 -22.74 -0.20 -13.23 16 14 C -0.40 -24.78 9.95 67.92 0.68 -24.11 16 15 H 0.07 4.61 5.44 -2.91 -0.02 4.60 16 16 C 0.01 0.65 5.49 84.83 0.47 1.11 16 17 N -0.92 -56.24 13.96 21.61 0.30 -55.94 16 18 Si 0.98 45.77 28.62 68.60 1.96 47.73 16 19 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 20 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 21 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 22 C -0.24 -11.74 8.58 22.48 0.19 -11.55 16 23 C -0.02 -0.35 5.83 24.83 0.14 -0.20 16 24 C -0.22 -4.48 10.78 22.19 0.24 -4.24 16 25 C -0.23 -3.72 10.91 22.19 0.24 -3.48 16 26 C -0.04 -0.50 12.09 66.97 0.81 0.31 16 27 O -0.18 -3.44 10.65 -2.53 -0.03 -3.47 16 28 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.06 1.67 5.96 -2.39 -0.01 1.65 16 31 H 0.13 2.42 8.14 -2.39 -0.02 2.40 16 32 H 0.14 2.28 8.14 -2.39 -0.02 2.26 16 33 H 0.16 3.69 8.06 -2.91 -0.02 3.67 16 34 H 0.18 3.29 8.06 -2.91 -0.02 3.27 16 35 H 0.15 4.71 8.06 -2.91 -0.02 4.68 16 36 H 0.29 15.93 8.31 -92.71 -0.77 15.16 16 37 H 0.10 5.51 5.64 -2.91 -0.02 5.49 16 38 H 0.15 2.88 8.06 -2.91 -0.02 2.86 16 39 H 0.17 1.93 8.06 -2.91 -0.02 1.91 16 40 H 0.24 1.17 8.06 -2.91 -0.02 1.14 16 Total: -1.00 -76.40 350.36 8.46 -67.94 By element: Atomic # 1 Polarization: 19.92 SS G_CDS: 1.07 Total: 20.99 kcal Atomic # 6 Polarization: -38.80 SS G_CDS: 5.01 Total: -33.78 kcal Atomic # 7 Polarization: -56.24 SS G_CDS: 0.30 Total: -55.94 kcal Atomic # 8 Polarization: -47.05 SS G_CDS: 0.12 Total: -46.94 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 1.96 Total: 47.73 kcal Total: -76.40 8.46 -67.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000860831513.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.833 kcal (2) G-P(sol) polarization free energy of solvation -76.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds