Wall clock time and date at job start Tue Mar 31 2020 11:46:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 113.99793 * 2 1 4 4 C 1.53007 * 109.46907 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.46819 * 65.00308 * 4 3 2 6 6 C 1.46496 * 119.99852 * 269.99659 * 5 4 3 7 7 C 1.50698 * 109.47482 * 270.00180 * 6 5 4 8 8 H 1.08005 * 120.00036 * 0.02562 * 7 6 5 9 9 C 1.37876 * 120.00110 * 180.02562 * 7 6 5 10 10 N 1.31507 * 120.00210 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 119.99748 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47550 * 359.97438 * 11 9 7 13 13 H 1.48501 * 109.47299 * 120.00164 * 11 9 7 14 14 H 1.48508 * 109.47261 * 239.99524 * 11 9 7 15 15 C 1.34776 * 119.99679 * 90.00540 * 5 4 3 16 16 O 1.21591 * 119.99813 * 179.97438 * 15 5 4 17 17 N 1.34768 * 120.00264 * 359.97438 * 15 5 4 18 18 C 1.40224 * 120.00286 * 180.02562 * 17 15 5 19 19 N 1.31219 * 125.96442 * 0.20259 * 18 17 15 20 20 N 1.40066 * 108.18738 * 180.23313 * 19 18 17 21 21 C 1.46505 * 125.97797 * 179.73664 * 20 19 18 22 22 C 1.35072 * 108.04929 * 359.74150 * 20 19 18 23 23 C 1.35293 * 107.83664 * 359.97438 * 22 20 19 24 24 Cl 1.73599 * 126.06953 * 179.97438 * 23 22 20 25 25 H 1.09004 * 109.47216 * 59.99165 * 1 2 3 26 26 H 1.09004 * 109.46931 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47129 * 299.99513 * 1 2 3 28 28 H 1.09002 * 109.46865 * 60.01022 * 3 2 1 29 29 H 1.08998 * 109.47726 * 300.00524 * 3 2 1 30 30 H 1.08997 * 109.46866 * 305.00287 * 4 3 2 31 31 H 1.09004 * 109.46822 * 185.00502 * 4 3 2 32 32 H 1.09003 * 109.47127 * 30.00690 * 6 5 4 33 33 H 1.08999 * 109.46876 * 150.00491 * 6 5 4 34 34 H 0.97003 * 120.00159 * 180.02562 * 10 9 7 35 35 H 0.97006 * 120.00517 * 0.02562 * 17 15 5 36 36 H 1.08995 * 109.47175 * 270.00770 * 21 20 19 37 37 H 1.09002 * 109.46695 * 29.99893 * 21 20 19 38 38 H 1.08998 * 109.47247 * 150.00043 * 21 20 19 39 39 H 1.08003 * 126.08314 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9756 0.5645 -1.2528 6 6 4.1052 -0.8920 -1.3429 7 6 5.5009 -1.2978 -0.9451 8 1 6.2196 -0.5460 -0.6539 9 6 5.8605 -2.6288 -0.9530 10 7 4.9854 -3.5443 -1.3071 11 14 7.5904 -3.1318 -0.4592 12 1 8.3760 -1.9220 -0.1061 13 1 7.5261 -4.0405 0.7135 14 1 8.2448 -3.8328 -1.5932 15 6 4.2615 1.3339 -2.3218 16 8 4.6272 0.8192 -3.3609 17 7 4.1420 2.6737 -2.2390 18 6 4.4389 3.4742 -3.3513 19 7 4.8371 3.0448 -4.5255 20 7 5.0300 4.1566 -5.3553 21 6 5.4788 4.1226 -6.7495 22 6 4.7301 5.2658 -4.6452 23 6 4.3577 4.8755 -3.4045 24 17 3.8739 5.9214 -2.1061 25 1 -0.3634 0.5140 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.6887 1.8463 0.8901 29 1 1.6885 1.8465 -0.8899 30 1 3.8514 0.5682 0.8409 31 1 3.9785 2.1765 0.0890 32 1 3.3852 -1.3629 -0.6735 33 1 3.9120 -1.2112 -2.3670 34 1 5.2383 -4.4808 -1.3122 35 1 3.8505 3.0844 -1.4099 36 1 6.5669 4.1779 -6.7824 37 1 5.1481 3.1940 -7.2150 38 1 5.0553 4.9701 -7.2883 39 1 4.7780 6.2833 -5.0043 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881180790.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:46:12 Heat of formation + Delta-G solvation = -3.489310 kcal Electronic energy + Delta-G solvation = -24624.422207 eV Core-core repulsion = 20823.263553 eV Total energy + Delta-G solvation = -3801.158653 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.109 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.45262 -41.04696 -38.80985 -37.42570 -36.69895 -36.10406 -34.73146 -33.09083 -31.10638 -30.97944 -29.08428 -27.26589 -27.06653 -25.02559 -24.10339 -22.76982 -22.14846 -20.38643 -19.32801 -18.60908 -18.40049 -17.52799 -17.08252 -16.96083 -16.66612 -16.55899 -16.16359 -15.68518 -15.55040 -15.30142 -14.98839 -14.50794 -14.43298 -13.99577 -13.63425 -13.41796 -13.35392 -13.08118 -12.89858 -12.75961 -12.65344 -12.55319 -12.29573 -12.17175 -12.00085 -11.83853 -11.62959 -11.54853 -10.96654 -10.61039 -10.54672 -9.96266 -9.48134 -9.08757 -8.16760 -6.31225 0.79993 0.95552 1.35636 1.37999 1.38675 1.40237 1.51825 2.06513 2.35845 2.44540 2.92455 2.94368 3.12841 3.52696 3.95018 4.11250 4.20053 4.29302 4.38251 4.42311 4.47918 4.50660 4.53461 4.57626 4.64569 4.75011 4.86258 4.89563 5.08805 5.30469 5.54950 5.61065 5.75485 5.93015 6.01245 6.12371 6.33265 6.58843 6.77884 7.08290 7.34517 7.63051 8.90355 Molecular weight = 316.11amu Principal moments of inertia in cm(-1) A = 0.011054 B = 0.004518 C = 0.003626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2532.360320 B = 6195.860611 C = 7719.211453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.414 6.414 3 C 0.045 3.955 4 C 0.102 3.898 5 N -0.603 5.603 6 C 0.290 3.710 7 C -0.541 4.541 8 H 0.050 0.950 9 C 0.008 3.992 10 N -0.928 5.928 11 Si 0.968 3.032 12 H -0.269 1.269 13 H -0.267 1.267 14 H -0.283 1.283 15 C 0.690 3.310 16 O -0.596 6.596 17 N -0.642 5.642 18 C 0.312 3.688 19 N -0.327 5.327 20 N -0.370 5.370 21 C 0.097 3.903 22 C 0.113 3.887 23 C -0.225 4.225 24 Cl -0.027 7.027 25 H 0.040 0.960 26 H 0.082 0.918 27 H 0.065 0.935 28 H 0.099 0.901 29 H 0.045 0.955 30 H 0.089 0.911 31 H 0.112 0.888 32 H 0.036 0.964 33 H -0.012 1.012 34 H 0.266 0.734 35 H 0.424 0.576 36 H 0.089 0.911 37 H 0.078 0.922 38 H 0.136 0.864 39 H 0.239 0.761 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.543 23.907 -2.150 24.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.333 6.333 3 C -0.033 4.033 4 C -0.020 4.020 5 N -0.337 5.337 6 C 0.168 3.832 7 C -0.580 4.580 8 H 0.069 0.931 9 C -0.191 4.191 10 N -0.568 5.568 11 Si 0.792 3.208 12 H -0.193 1.193 13 H -0.192 1.192 14 H -0.209 1.209 15 C 0.391 3.609 16 O -0.471 6.471 17 N -0.298 5.298 18 C 0.053 3.947 19 N -0.157 5.157 20 N -0.152 5.152 21 C -0.042 4.042 22 C -0.037 4.037 23 C -0.266 4.266 24 Cl 0.001 6.999 25 H 0.059 0.941 26 H 0.101 0.899 27 H 0.083 0.917 28 H 0.116 0.884 29 H 0.064 0.936 30 H 0.108 0.892 31 H 0.129 0.871 32 H 0.054 0.946 33 H 0.007 0.993 34 H 0.075 0.925 35 H 0.265 0.735 36 H 0.107 0.893 37 H 0.096 0.904 38 H 0.154 0.846 39 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -4.918 22.130 -3.602 22.955 hybrid contribution 0.158 0.155 1.075 1.098 sum -4.760 22.285 -2.527 22.928 Atomic orbital electron populations 1.22861 0.80002 1.03157 1.00757 1.88040 1.21160 1.28614 1.95506 1.23180 0.93266 0.85071 1.01735 1.21868 0.93413 0.99707 0.87058 1.47327 1.68113 1.07738 1.10535 1.18602 0.95636 0.73638 0.95291 1.21782 0.98262 0.92599 1.45375 0.93125 1.25831 1.01789 0.96313 0.95146 1.70080 1.36421 1.01378 1.48885 0.85373 0.79106 0.78248 0.78047 1.19327 1.19204 1.20852 1.16132 0.79232 0.81141 0.84434 1.90946 1.53072 1.72516 1.30614 1.42060 1.70711 1.03828 1.13240 1.19143 0.98454 0.88817 0.88248 1.78284 1.27434 1.08350 1.01589 1.48652 1.51243 1.02851 1.12495 1.22306 1.01846 1.06204 0.73874 1.22887 0.96167 0.95256 0.89363 1.20394 1.24143 0.87648 0.94427 1.98304 1.90874 1.64097 1.46617 0.94142 0.89936 0.91677 0.88358 0.93636 0.89233 0.87061 0.94620 0.99345 0.92521 0.73482 0.89261 0.90356 0.84566 0.74499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.72 11.01 113.37 1.25 1.97 16 2 O -0.41 -14.59 9.53 -148.98 -1.42 -16.01 16 3 C 0.04 1.26 6.28 71.98 0.45 1.71 16 4 C 0.10 3.38 5.58 86.38 0.48 3.86 16 5 N -0.60 -27.99 2.42 -844.20 -2.04 -30.03 16 6 C 0.29 16.84 4.98 85.63 0.43 17.26 16 7 C -0.54 -33.07 9.39 25.60 0.24 -32.83 16 8 H 0.05 3.07 7.81 -2.91 -0.02 3.05 16 9 C 0.01 0.48 5.46 84.66 0.46 0.94 16 10 N -0.93 -58.78 13.29 21.45 0.28 -58.50 16 11 Si 0.97 47.15 29.54 68.60 2.03 49.18 16 12 H -0.27 -12.74 7.11 99.48 0.71 -12.04 16 13 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 14 H -0.28 -13.64 7.11 99.48 0.71 -12.93 16 15 C 0.69 32.97 8.25 179.06 1.48 34.45 16 16 O -0.60 -35.07 14.64 -4.00 -0.06 -35.13 16 17 N -0.64 -23.35 5.32 -321.17 -1.71 -25.05 16 18 C 0.31 10.96 7.82 133.31 1.04 12.00 16 19 N -0.33 -12.71 10.80 -54.37 -0.59 -13.30 16 20 N -0.37 -9.21 4.01 -369.47 -1.48 -10.69 16 21 C 0.10 1.39 11.47 127.77 1.47 2.86 16 22 C 0.11 2.10 11.46 83.51 0.96 3.06 16 23 C -0.23 -5.58 6.67 22.13 0.15 -5.43 16 24 Cl -0.03 -0.52 29.18 -2.72 -0.08 -0.60 16 25 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 27 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 29 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.09 3.13 8.07 -2.39 -0.02 3.11 16 31 H 0.11 2.75 6.36 -2.39 -0.02 2.73 16 32 H 0.04 2.14 7.11 -2.39 -0.02 2.12 16 33 H -0.01 -0.79 7.42 -2.39 -0.02 -0.80 16 34 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 35 H 0.42 11.98 6.43 -92.70 -0.60 11.39 16 36 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.08 1.39 8.14 -2.39 -0.02 1.38 16 38 H 0.14 0.62 8.14 -2.39 -0.02 0.60 16 39 H 0.24 1.56 8.06 -2.91 -0.02 1.54 16 Total: -1.00 -92.12 353.10 3.82 -88.31 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: 0.48 Total: 11.98 kcal Atomic # 6 Polarization: 31.45 SS G_CDS: 8.40 Total: 39.85 kcal Atomic # 7 Polarization: -132.04 SS G_CDS: -5.54 Total: -137.57 kcal Atomic # 8 Polarization: -49.67 SS G_CDS: -1.48 Total: -51.15 kcal Atomic # 14 Polarization: 47.15 SS G_CDS: 2.03 Total: 49.18 kcal Atomic # 17 Polarization: -0.52 SS G_CDS: -0.08 Total: -0.60 kcal Total: -92.12 3.82 -88.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881180790.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.818 kcal (2) G-P(sol) polarization free energy of solvation -92.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds