Wall clock time and date at job start Tue Mar 31 2020 11:12:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34517 * 126.58281 * 2 1 4 4 O 1.34302 * 108.41982 * 180.02562 * 3 2 1 5 5 C 1.34302 * 109.47884 * 0.02562 * 4 3 2 6 6 C 1.50696 * 125.78780 * 179.97438 * 5 4 3 7 7 O 1.45203 * 109.47037 * 270.01894 * 6 5 4 8 8 C 1.34230 * 117.00479 * 180.02562 * 7 6 5 9 9 O 1.20823 * 119.99459 * 0.02562 * 8 7 6 10 10 C 1.50699 * 120.00327 * 179.97438 * 8 7 6 11 11 C 1.50699 * 109.47151 * 180.02562 * 10 8 7 12 12 C 1.38328 * 119.96224 * 270.02423 * 11 10 8 13 13 C 1.38281 * 120.13505 * 179.97438 * 12 11 10 14 14 C 1.38120 * 120.06679 * 359.68445 * 13 12 11 15 15 C 1.38852 * 119.93490 * 0.58817 * 14 13 12 16 16 O 1.35752 * 120.07221 * 179.70368 * 15 14 13 17 17 C 1.34829 * 116.99954 * 354.17311 * 16 15 14 18 18 H 1.07998 * 119.99999 * 5.03596 * 17 16 15 19 19 C 1.38656 * 119.99670 * 185.03445 * 17 16 15 20 20 N 1.31550 * 120.00275 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99668 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46814 * 90.00164 * 21 19 17 23 23 H 1.48501 * 109.47378 * 210.00272 * 21 19 17 24 24 H 1.48503 * 109.47143 * 330.00397 * 21 19 17 25 25 C 1.38073 * 119.96539 * 89.99818 * 11 10 8 26 26 C 1.34517 * 108.41959 * 0.23881 * 5 4 3 27 27 H 1.08995 * 109.47352 * 89.97536 * 1 2 3 28 28 H 1.09004 * 109.47147 * 209.97972 * 1 2 3 29 29 H 1.09006 * 109.46986 * 329.97211 * 1 2 3 30 30 H 1.07995 * 125.78271 * 0.02562 * 3 2 1 31 31 H 1.09001 * 109.47454 * 150.02069 * 6 5 4 32 32 H 1.08993 * 109.47450 * 30.01786 * 6 5 4 33 33 H 1.09004 * 109.46756 * 59.99766 * 10 8 7 34 34 H 1.08998 * 109.46908 * 300.00408 * 10 8 7 35 35 H 1.08001 * 119.93314 * 359.97438 * 12 11 10 36 36 H 1.07993 * 119.96315 * 179.97438 * 13 12 11 37 37 H 1.08001 * 120.03256 * 180.31909 * 14 13 12 38 38 H 0.96999 * 119.99936 * 179.97438 * 20 19 17 39 39 H 1.07996 * 120.03547 * 0.04988 * 25 11 10 40 40 H 1.08000 * 126.57801 * 179.76787 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3087 1.0802 0.0000 4 8 3.5848 0.6615 -0.0006 5 6 3.6156 -0.6811 -0.0015 6 6 4.8580 -1.5341 -0.0029 7 8 5.2563 -1.8067 -1.3724 8 6 6.3530 -2.5602 -1.5496 9 8 6.9597 -2.9784 -0.5921 10 6 6.8268 -2.8853 -2.9427 11 6 8.0668 -3.7382 -2.8653 12 6 9.3143 -3.1417 -2.8289 13 6 10.4545 -3.9208 -2.7573 14 6 10.3505 -5.2974 -2.7155 15 6 9.1000 -5.8994 -2.7576 16 8 8.9948 -7.2523 -2.7227 17 6 10.1433 -7.9570 -2.7690 18 1 11.0931 -7.4434 -2.7488 19 6 10.1050 -9.3411 -2.8426 20 7 8.9480 -9.9667 -2.8677 21 14 11.6963 -10.3173 -2.9075 22 1 12.1291 -10.6506 -1.5266 23 1 11.4774 -11.5704 -3.6737 24 1 12.7474 -9.5069 -3.5736 25 6 7.9565 -5.1140 -2.8304 26 6 2.3495 -1.1354 -0.0069 27 1 -0.3634 0.0004 -1.0276 28 1 -0.3634 -0.8902 0.5135 29 1 -0.3633 0.8898 0.5143 30 1 1.9815 2.1094 0.0004 31 1 4.6541 -2.4740 0.5101 32 1 5.6615 -1.0066 0.5110 33 1 7.0535 -1.9611 -3.4743 34 1 6.0455 -3.4282 -3.4747 35 1 9.3980 -2.0653 -2.8564 36 1 11.4271 -3.4522 -2.7294 37 1 11.2412 -5.9052 -2.6544 38 1 8.9212 -10.9349 -2.9195 39 1 6.9822 -5.5791 -2.8592 40 1 2.0366 -2.1690 -0.0124 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893746038.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:44 Heat of formation + Delta-G solvation = -74.003116 kcal Electronic energy + Delta-G solvation = -24332.176766 eV Core-core repulsion = 20465.807752 eV Total energy + Delta-G solvation = -3866.369014 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.119 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.91744 -40.47488 -38.97775 -36.96679 -36.17437 -34.42807 -32.55603 -32.19480 -31.72558 -29.27912 -28.25171 -27.38574 -26.09869 -25.22703 -22.08058 -21.63052 -21.51123 -20.35780 -20.15700 -17.77886 -17.68073 -17.49714 -16.97445 -16.54212 -16.36315 -15.96421 -15.11671 -14.70550 -14.48119 -14.38919 -13.98805 -13.66931 -13.54823 -13.49912 -13.34765 -13.03857 -12.86120 -12.73794 -12.49413 -12.39457 -11.96575 -11.80335 -11.56877 -11.28747 -10.86334 -10.83078 -10.81562 -10.64555 -10.44687 -10.42444 -9.90452 -9.34491 -8.83679 -8.80991 -8.12211 -7.23687 -6.43422 -4.02526 1.18385 1.94764 2.18463 2.30726 2.37245 2.56245 3.08909 3.14574 3.15887 3.19546 3.97558 4.22204 4.52783 4.55268 4.63234 4.80975 4.88644 4.91570 5.03300 5.10520 5.14489 5.26664 5.28228 5.39329 5.48219 5.51216 5.63116 5.71293 5.73167 5.80255 5.91241 6.15269 6.19202 6.31640 6.33219 6.64030 6.80058 6.89288 7.06306 7.21993 7.35258 7.42885 7.78791 7.83107 8.01302 9.02193 9.72186 10.74687 Molecular weight = 316.12amu Principal moments of inertia in cm(-1) A = 0.025136 B = 0.002158 C = 0.002037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.670666 B =12971.715025 C =13739.487112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.187 4.187 3 C -0.031 4.031 4 O -0.169 6.169 5 C -0.020 4.020 6 C 0.148 3.852 7 O -0.358 6.358 8 C 0.463 3.537 9 O -0.487 6.487 10 C -0.063 4.063 11 C -0.045 4.045 12 C -0.195 4.195 13 C -0.074 4.074 14 C -0.227 4.227 15 C 0.154 3.846 16 O -0.178 6.178 17 C -0.391 4.391 18 H 0.092 0.908 19 C 0.039 3.961 20 N -0.863 5.863 21 Si 0.941 3.059 22 H -0.273 1.273 23 H -0.278 1.278 24 H -0.267 1.267 25 C -0.172 4.172 26 C -0.174 4.174 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.204 0.796 31 H 0.105 0.895 32 H 0.088 0.912 33 H 0.111 0.889 34 H 0.113 0.887 35 H 0.105 0.895 36 H 0.109 0.891 37 H 0.127 0.873 38 H 0.270 0.730 39 H 0.116 0.884 40 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.342 19.933 3.213 23.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.189 4.189 3 C -0.099 4.099 4 O -0.065 6.065 5 C -0.069 4.069 6 C 0.075 3.925 7 O -0.277 6.277 8 C 0.305 3.695 9 O -0.371 6.371 10 C -0.100 4.100 11 C -0.045 4.045 12 C -0.214 4.214 13 C -0.093 4.093 14 C -0.246 4.246 15 C 0.100 3.900 16 O -0.082 6.082 17 C -0.468 4.468 18 H 0.109 0.891 19 C -0.166 4.166 20 N -0.498 5.498 21 Si 0.766 3.234 22 H -0.199 1.199 23 H -0.203 1.203 24 H -0.192 1.192 25 C -0.191 4.191 26 C -0.194 4.194 27 H 0.087 0.913 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.221 0.779 31 H 0.123 0.877 32 H 0.106 0.894 33 H 0.129 0.871 34 H 0.131 0.869 35 H 0.123 0.877 36 H 0.127 0.873 37 H 0.145 0.855 38 H 0.080 0.920 39 H 0.134 0.866 40 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -12.186 19.575 3.543 23.329 hybrid contribution 0.678 -0.522 0.171 0.872 sum -11.509 19.053 3.714 22.567 Atomic orbital electron populations 1.20174 0.88955 1.02660 1.02260 1.20535 0.97485 0.92599 1.08239 1.23923 0.79990 0.99820 1.06192 1.84018 1.29486 1.21881 1.71100 1.21760 0.95872 0.80862 1.08438 1.21019 0.91880 0.97553 0.82091 1.86575 1.44587 1.65889 1.30635 1.23913 0.77380 0.74924 0.93317 1.90736 1.54802 1.48757 1.42853 1.20274 0.97525 1.01861 0.90350 1.18658 0.92455 0.92339 1.01079 1.20381 0.91981 0.98254 1.10741 1.20691 0.97356 0.93334 0.97886 1.21208 0.97904 0.94913 1.10587 1.19264 0.92935 0.85198 0.92600 1.83976 1.33717 1.11561 1.78911 1.21321 0.84077 0.88733 1.52634 0.89076 1.25286 0.98884 0.95811 0.96573 1.70037 1.24351 1.09312 1.46118 0.85711 0.80018 0.79028 0.78659 1.19899 1.20269 1.19197 1.19969 0.97112 0.91830 1.10189 1.21609 0.91458 1.00321 1.05978 0.91311 0.91383 0.91635 0.77909 0.87738 0.89376 0.87055 0.86899 0.87706 0.87302 0.85492 0.92048 0.86592 0.82995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.50 10.40 36.01 0.37 -0.13 16 2 C -0.19 -1.64 6.16 -104.74 -0.65 -2.28 16 3 C -0.03 -0.26 12.01 29.42 0.35 0.09 16 4 O -0.17 -1.86 10.65 5.72 0.06 -1.80 16 5 C -0.02 -0.22 6.96 -35.63 -0.25 -0.47 16 6 C 0.15 1.69 5.99 36.00 0.22 1.91 16 7 O -0.36 -4.71 10.20 -39.26 -0.40 -5.11 16 8 C 0.46 6.89 7.95 36.01 0.29 7.18 16 9 O -0.49 -8.96 15.78 -18.75 -0.30 -9.26 16 10 C -0.06 -0.85 5.94 -29.04 -0.17 -1.02 16 11 C -0.04 -0.81 4.37 -104.65 -0.46 -1.27 16 12 C -0.19 -3.44 9.70 -39.53 -0.38 -3.82 16 13 C -0.07 -1.40 10.04 -39.61 -0.40 -1.80 16 14 C -0.23 -5.04 9.17 -39.40 -0.36 -5.40 16 15 C 0.15 3.79 6.65 -39.11 -0.26 3.53 16 16 O -0.18 -5.15 9.76 0.05 0.00 -5.15 16 17 C -0.39 -11.05 9.49 30.89 0.29 -10.76 16 18 H 0.09 2.38 5.21 -52.49 -0.27 2.11 16 19 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 20 N -0.86 -25.49 13.67 55.48 0.76 -24.73 16 21 Si 0.94 20.68 29.55 -169.99 -5.02 15.66 16 22 H -0.27 -5.88 7.11 56.52 0.40 -5.47 16 23 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 24 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 25 C -0.17 -3.69 9.65 -39.39 -0.38 -4.07 16 26 C -0.17 -1.75 10.77 -39.70 -0.43 -2.18 16 27 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.20 0.89 8.06 -52.49 -0.42 0.47 16 31 H 0.10 1.10 8.13 -51.93 -0.42 0.68 16 32 H 0.09 0.97 8.13 -51.93 -0.42 0.55 16 33 H 0.11 1.18 8.09 -51.93 -0.42 0.76 16 34 H 0.11 1.31 8.08 -51.93 -0.42 0.89 16 35 H 0.10 1.55 8.06 -52.49 -0.42 1.13 16 36 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 37 H 0.13 2.80 5.64 -52.49 -0.30 2.50 16 38 H 0.27 7.29 8.31 -40.82 -0.34 6.96 16 39 H 0.12 2.40 8.06 -52.49 -0.42 1.97 16 40 H 0.15 1.32 8.06 -52.49 -0.42 0.89 16 LS Contribution 357.98 15.07 5.39 5.39 Total: -1.00 -34.21 357.98 -6.58 -40.80 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: -4.77 Total: 3.70 kcal Atomic # 6 Polarization: -17.20 SS G_CDS: -2.31 Total: -19.50 kcal Atomic # 7 Polarization: -25.49 SS G_CDS: 0.76 Total: -24.73 kcal Atomic # 8 Polarization: -20.68 SS G_CDS: -0.64 Total: -21.32 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -34.21 -6.58 -40.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893746038.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.207 kcal (2) G-P(sol) polarization free energy of solvation -34.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds