Wall clock time and date at job start Tue Mar 31 2020 11:12:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34517 * 126.58281 * 2 1 4 4 O 1.34302 * 108.41982 * 180.02562 * 3 2 1 5 5 C 1.34302 * 109.47884 * 0.02562 * 4 3 2 6 6 C 1.50696 * 125.78780 * 179.97438 * 5 4 3 7 7 O 1.45203 * 109.47037 * 270.01894 * 6 5 4 8 8 C 1.34230 * 117.00479 * 180.02562 * 7 6 5 9 9 O 1.20823 * 119.99459 * 0.02562 * 8 7 6 10 10 C 1.50699 * 120.00327 * 179.97438 * 8 7 6 11 11 C 1.50699 * 109.47151 * 180.02562 * 10 8 7 12 12 C 1.38328 * 119.96224 * 270.02423 * 11 10 8 13 13 C 1.38281 * 120.13505 * 179.97438 * 12 11 10 14 14 C 1.38120 * 120.06679 * 359.68445 * 13 12 11 15 15 C 1.38852 * 119.93490 * 0.58817 * 14 13 12 16 16 O 1.35752 * 120.07221 * 179.70368 * 15 14 13 17 17 C 1.34829 * 116.99954 * 354.17311 * 16 15 14 18 18 H 1.07998 * 119.99999 * 5.03596 * 17 16 15 19 19 C 1.38656 * 119.99670 * 185.03445 * 17 16 15 20 20 N 1.31550 * 120.00275 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99668 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46814 * 90.00164 * 21 19 17 23 23 H 1.48501 * 109.47378 * 210.00272 * 21 19 17 24 24 H 1.48503 * 109.47143 * 330.00397 * 21 19 17 25 25 C 1.38073 * 119.96539 * 89.99818 * 11 10 8 26 26 C 1.34517 * 108.41959 * 0.23881 * 5 4 3 27 27 H 1.08995 * 109.47352 * 89.97536 * 1 2 3 28 28 H 1.09004 * 109.47147 * 209.97972 * 1 2 3 29 29 H 1.09006 * 109.46986 * 329.97211 * 1 2 3 30 30 H 1.07995 * 125.78271 * 0.02562 * 3 2 1 31 31 H 1.09001 * 109.47454 * 150.02069 * 6 5 4 32 32 H 1.08993 * 109.47450 * 30.01786 * 6 5 4 33 33 H 1.09004 * 109.46756 * 59.99766 * 10 8 7 34 34 H 1.08998 * 109.46908 * 300.00408 * 10 8 7 35 35 H 1.08001 * 119.93314 * 359.97438 * 12 11 10 36 36 H 1.07993 * 119.96315 * 179.97438 * 13 12 11 37 37 H 1.08001 * 120.03256 * 180.31909 * 14 13 12 38 38 H 0.96999 * 119.99936 * 179.97438 * 20 19 17 39 39 H 1.07996 * 120.03547 * 0.04988 * 25 11 10 40 40 H 1.08000 * 126.57801 * 179.76787 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3087 1.0802 0.0000 4 8 3.5848 0.6615 -0.0006 5 6 3.6156 -0.6811 -0.0015 6 6 4.8580 -1.5341 -0.0029 7 8 5.2563 -1.8067 -1.3724 8 6 6.3530 -2.5602 -1.5496 9 8 6.9597 -2.9784 -0.5921 10 6 6.8268 -2.8853 -2.9427 11 6 8.0668 -3.7382 -2.8653 12 6 9.3143 -3.1417 -2.8289 13 6 10.4545 -3.9208 -2.7573 14 6 10.3505 -5.2974 -2.7155 15 6 9.1000 -5.8994 -2.7576 16 8 8.9948 -7.2523 -2.7227 17 6 10.1433 -7.9570 -2.7690 18 1 11.0931 -7.4434 -2.7488 19 6 10.1050 -9.3411 -2.8426 20 7 8.9480 -9.9667 -2.8677 21 14 11.6963 -10.3173 -2.9075 22 1 12.1291 -10.6506 -1.5266 23 1 11.4774 -11.5704 -3.6737 24 1 12.7474 -9.5069 -3.5736 25 6 7.9565 -5.1140 -2.8304 26 6 2.3495 -1.1354 -0.0069 27 1 -0.3634 0.0004 -1.0276 28 1 -0.3634 -0.8902 0.5135 29 1 -0.3633 0.8898 0.5143 30 1 1.9815 2.1094 0.0004 31 1 4.6541 -2.4740 0.5101 32 1 5.6615 -1.0066 0.5110 33 1 7.0535 -1.9611 -3.4743 34 1 6.0455 -3.4282 -3.4747 35 1 9.3980 -2.0653 -2.8564 36 1 11.4271 -3.4522 -2.7294 37 1 11.2412 -5.9052 -2.6544 38 1 8.9212 -10.9349 -2.9195 39 1 6.9822 -5.5791 -2.8592 40 1 2.0366 -2.1690 -0.0124 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893746038.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:43 Heat of formation + Delta-G solvation = -93.945996 kcal Electronic energy + Delta-G solvation = -24333.041554 eV Core-core repulsion = 20465.807752 eV Total energy + Delta-G solvation = -3867.233802 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.119 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.64299 -41.67620 -40.67830 -38.51200 -37.53986 -35.08455 -34.36295 -33.70349 -32.65999 -30.94068 -29.22524 -28.39616 -27.33683 -26.84448 -23.50727 -23.13676 -22.35324 -21.80678 -20.87290 -19.51381 -18.85232 -18.82375 -18.27592 -17.66446 -17.25695 -16.89172 -16.73128 -16.36153 -16.10891 -15.55285 -15.34777 -15.14465 -14.82022 -14.41240 -14.13881 -14.10808 -13.96195 -13.94106 -13.62094 -13.58332 -13.25907 -12.98334 -12.92741 -12.50461 -12.49597 -12.42246 -12.24881 -12.11174 -11.85918 -11.67075 -11.21687 -10.81004 -10.62414 -9.72120 -9.49762 -9.00665 -8.47128 -6.15628 0.28930 0.55728 0.73422 1.14759 1.34564 1.40014 1.44673 1.52383 1.76916 2.15650 2.17941 2.83996 3.16034 3.39275 3.48288 3.70925 3.88339 3.91799 3.96721 4.08445 4.18503 4.22647 4.29303 4.37653 4.45785 4.54140 4.60148 4.72510 4.73770 4.86968 5.01296 5.02793 5.09899 5.12009 5.16686 5.23418 5.30955 5.58608 5.61643 5.69495 5.72336 6.02127 6.08286 6.20256 6.67598 6.97409 7.78277 8.76240 Molecular weight = 316.12amu Principal moments of inertia in cm(-1) A = 0.025136 B = 0.002158 C = 0.002037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.670666 B =12971.715025 C =13739.487112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.202 4.202 3 C -0.026 4.026 4 O -0.185 6.185 5 C -0.045 4.045 6 C 0.147 3.853 7 O -0.354 6.354 8 C 0.470 3.530 9 O -0.530 6.530 10 C -0.061 4.061 11 C -0.037 4.037 12 C -0.176 4.176 13 C -0.073 4.073 14 C -0.241 4.241 15 C 0.111 3.889 16 O -0.233 6.233 17 C -0.414 4.414 18 H 0.101 0.899 19 C -0.025 4.025 20 N -0.921 5.921 21 Si 1.020 2.980 22 H -0.265 1.265 23 H -0.270 1.270 24 H -0.252 1.252 25 C -0.188 4.188 26 C -0.179 4.179 27 H 0.074 0.926 28 H 0.068 0.932 29 H 0.083 0.917 30 H 0.242 0.758 31 H 0.107 0.893 32 H 0.090 0.910 33 H 0.155 0.845 34 H 0.134 0.866 35 H 0.150 0.850 36 H 0.148 0.852 37 H 0.119 0.881 38 H 0.272 0.728 39 H 0.110 0.890 40 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.268 23.340 2.789 26.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.204 4.204 3 C -0.093 4.093 4 O -0.082 6.082 5 C -0.094 4.094 6 C 0.074 3.926 7 O -0.272 6.272 8 C 0.315 3.685 9 O -0.418 6.418 10 C -0.098 4.098 11 C -0.038 4.038 12 C -0.195 4.195 13 C -0.091 4.091 14 C -0.260 4.260 15 C 0.061 3.939 16 O -0.140 6.140 17 C -0.490 4.490 18 H 0.119 0.881 19 C -0.222 4.222 20 N -0.560 5.560 21 Si 0.839 3.161 22 H -0.190 1.190 23 H -0.195 1.195 24 H -0.175 1.175 25 C -0.208 4.208 26 C -0.199 4.199 27 H 0.092 0.908 28 H 0.087 0.913 29 H 0.102 0.898 30 H 0.258 0.742 31 H 0.125 0.875 32 H 0.108 0.892 33 H 0.173 0.827 34 H 0.152 0.848 35 H 0.168 0.832 36 H 0.165 0.835 37 H 0.137 0.863 38 H 0.081 0.919 39 H 0.129 0.871 40 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -12.131 23.056 3.110 26.238 hybrid contribution 0.489 -1.174 0.325 1.313 sum -11.642 21.882 3.435 25.023 Atomic orbital electron populations 1.20237 0.87064 1.03656 1.02910 1.20920 0.98914 0.92165 1.08372 1.24734 0.78913 1.01436 1.04213 1.84001 1.30969 1.21726 1.71509 1.21696 0.95862 0.81209 1.10643 1.21112 0.92371 0.98008 0.81151 1.86559 1.43647 1.65121 1.31830 1.24063 0.77153 0.74105 0.93228 1.90735 1.56276 1.50532 1.44258 1.20399 0.96041 1.03153 0.90187 1.19103 0.94977 0.91207 0.98478 1.21018 0.91117 1.00510 1.06822 1.21147 0.99875 0.91803 0.96265 1.21341 0.96682 0.96723 1.11301 1.19866 0.95161 0.84361 0.94548 1.83938 1.34404 1.13708 1.81942 1.21825 0.84624 0.89545 1.52977 0.88126 1.26613 1.03047 0.96645 0.95892 1.70185 1.27189 1.09702 1.48877 0.84574 0.75160 0.77250 0.79132 1.18954 1.19476 1.17548 1.20243 0.96147 0.93539 1.10822 1.21905 0.91609 1.01298 1.05067 0.90758 0.91307 0.89804 0.74239 0.87463 0.89211 0.82737 0.84833 0.83185 0.83471 0.86299 0.91852 0.87143 0.82357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.79 10.40 71.24 0.74 -0.05 16 2 C -0.20 -3.15 6.16 -19.94 -0.12 -3.27 16 3 C -0.03 -0.37 12.01 66.97 0.80 0.44 16 4 O -0.19 -3.80 10.65 -2.46 -0.03 -3.83 16 5 C -0.04 -0.96 6.96 24.83 0.17 -0.78 16 6 C 0.15 3.27 5.99 71.23 0.43 3.69 16 7 O -0.35 -8.71 10.20 -51.42 -0.52 -9.24 16 8 C 0.47 13.12 7.95 71.24 0.57 13.68 16 9 O -0.53 -19.10 15.78 21.97 0.35 -18.75 16 10 C -0.06 -1.45 5.94 29.10 0.17 -1.28 16 11 C -0.04 -1.26 4.37 -19.88 -0.09 -1.35 16 12 C -0.18 -5.56 9.70 22.30 0.22 -5.34 16 13 C -0.07 -2.56 10.04 22.25 0.22 -2.34 16 14 C -0.24 -10.84 9.17 22.39 0.21 -10.64 16 15 C 0.11 5.71 6.65 22.58 0.15 5.86 16 16 O -0.23 -14.42 9.76 -22.74 -0.22 -14.65 16 17 C -0.41 -24.64 9.49 67.92 0.64 -24.00 16 18 H 0.10 5.50 5.21 -2.91 -0.02 5.49 16 19 C -0.02 -1.43 5.49 84.83 0.47 -0.97 16 20 N -0.92 -57.50 13.67 21.61 0.30 -57.20 16 21 Si 1.02 43.61 29.55 68.60 2.03 45.64 16 22 H -0.26 -10.80 7.11 99.48 0.71 -10.10 16 23 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 24 H -0.25 -9.96 7.11 99.48 0.71 -9.26 16 25 C -0.19 -8.26 9.65 22.39 0.22 -8.04 16 26 C -0.18 -3.44 10.77 22.19 0.24 -3.20 16 27 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.07 0.65 8.14 -2.38 -0.02 0.63 16 29 H 0.08 0.50 8.14 -2.38 -0.02 0.48 16 30 H 0.24 1.24 8.06 -2.91 -0.02 1.22 16 31 H 0.11 2.28 8.13 -2.39 -0.02 2.26 16 32 H 0.09 1.94 8.13 -2.39 -0.02 1.92 16 33 H 0.16 2.41 8.09 -2.38 -0.02 2.39 16 34 H 0.13 2.70 8.08 -2.39 -0.02 2.68 16 35 H 0.15 3.47 8.06 -2.91 -0.02 3.45 16 36 H 0.15 4.01 8.06 -2.91 -0.02 3.99 16 37 H 0.12 5.40 5.64 -2.91 -0.02 5.39 16 38 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 39 H 0.11 4.80 8.06 -2.91 -0.02 4.78 16 40 H 0.16 2.66 8.06 -2.91 -0.02 2.63 16 Total: -1.00 -80.63 357.98 8.00 -72.63 By element: Atomic # 1 Polarization: 21.92 SS G_CDS: 1.07 Total: 22.99 kcal Atomic # 6 Polarization: -42.62 SS G_CDS: 5.03 Total: -37.59 kcal Atomic # 7 Polarization: -57.50 SS G_CDS: 0.30 Total: -57.20 kcal Atomic # 8 Polarization: -46.04 SS G_CDS: -0.43 Total: -46.46 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Total: -80.63 8.00 -72.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893746038.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.315 kcal (2) G-P(sol) polarization free energy of solvation -80.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds