Wall clock time and date at job start Tue Mar 31 2020 11:25:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50707 * 120.00203 * 2 1 4 4 N 1.46498 * 109.46964 * 125.00210 * 3 2 1 5 5 C 1.46497 * 120.00032 * 90.00490 * 4 3 2 6 6 C 1.50694 * 109.47469 * 89.99866 * 5 4 3 7 7 H 1.08007 * 119.99859 * 0.02562 * 6 5 4 8 8 C 1.37876 * 120.00482 * 179.97438 * 6 5 4 9 9 N 1.31518 * 119.99661 * 0.02562 * 8 6 5 10 10 Si 1.86796 * 120.00437 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.46921 * 90.00251 * 10 8 6 12 12 H 1.48494 * 109.47590 * 210.00060 * 10 8 6 13 13 H 1.48501 * 109.47111 * 330.00331 * 10 8 6 14 14 C 1.34778 * 119.99811 * 270.00328 * 4 3 2 15 15 O 1.21278 * 119.99556 * 180.02562 * 14 4 3 16 16 C 1.50697 * 120.00267 * 359.97438 * 14 4 3 17 17 N 1.46897 * 109.47231 * 185.43202 * 16 14 4 18 18 C 1.47069 * 110.99805 * 210.87008 * 17 16 14 19 19 S 1.79692 * 111.72382 * 184.43488 * 18 17 16 20 20 C 1.82761 * 102.39258 * 93.60573 * 19 18 17 21 21 C 1.43982 * 113.17106 * 282.31488 * 20 19 18 22 22 S 1.82758 * 113.16621 * 66.54536 * 21 20 19 23 23 C 1.47060 * 111.00292 * 75.84758 * 17 16 14 24 24 H 1.08001 * 119.99843 * 359.97438 * 1 2 3 25 25 H 1.07993 * 120.00187 * 179.97438 * 1 2 3 26 26 H 1.08003 * 120.00207 * 180.02562 * 2 1 3 27 27 H 1.08997 * 109.46963 * 5.00280 * 3 2 1 28 28 H 1.08998 * 109.47218 * 245.00708 * 3 2 1 29 29 H 1.09004 * 109.47104 * 210.00141 * 5 4 3 30 30 H 1.09001 * 109.46760 * 329.99441 * 5 4 3 31 31 H 0.97002 * 119.99943 * 179.97438 * 9 8 6 32 32 H 1.09002 * 109.47127 * 305.43481 * 16 14 4 33 33 H 1.09001 * 109.46727 * 65.43211 * 16 14 4 34 34 H 1.09000 * 109.03054 * 305.01322 * 18 17 16 35 35 H 1.08996 * 109.02928 * 63.85955 * 18 17 16 36 36 H 1.09001 * 108.74163 * 161.36288 * 20 19 18 37 37 H 1.09001 * 108.64829 * 43.20440 * 20 19 18 38 38 H 1.08996 * 108.74387 * 305.58994 * 21 20 19 39 39 H 1.09002 * 108.74057 * 187.49410 * 21 20 19 40 40 H 1.08998 * 109.03309 * 206.77408 * 23 17 16 41 41 H 1.09002 * 109.02691 * 325.61684 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9938 1.3318 1.1314 5 6 4.3590 0.8256 0.9693 6 6 5.2616 1.9479 0.5259 7 1 4.8587 2.9393 0.3798 8 6 6.6019 1.7095 0.3077 9 7 7.0926 0.5024 0.4860 10 14 7.7207 3.1005 -0.2427 11 1 8.2901 3.7788 0.9493 12 1 8.8224 2.5508 -1.0728 13 1 6.9388 4.0777 -1.0420 14 6 2.5937 1.8221 2.3214 15 8 3.3640 1.8447 3.2578 16 6 1.1896 2.3434 2.4879 17 7 1.0426 2.9362 3.8239 18 6 -0.3349 2.7882 4.3175 19 16 -0.5693 3.6180 5.8940 20 6 -1.1943 5.2582 5.3848 21 6 -0.1587 6.1342 4.9019 22 16 0.5927 5.5646 3.3363 23 6 1.6909 4.2545 3.8899 24 1 -0.5400 0.9353 0.0004 25 1 -0.5400 -0.9352 -0.0004 26 1 1.8500 -0.9353 -0.0004 27 1 1.3587 2.1316 0.0896 28 1 2.6212 1.4027 -0.9314 29 1 4.7142 0.4277 1.9199 30 1 4.3666 0.0351 0.2189 31 1 8.0355 0.3345 0.3321 32 1 0.9912 3.1015 1.7302 33 1 0.4815 1.5225 2.3747 34 1 -1.0221 3.2137 3.5862 35 1 -0.5574 1.7279 4.4374 36 1 -1.6806 5.7284 6.2394 37 1 -1.9327 5.1199 4.5949 38 1 0.6216 6.2050 5.6596 39 1 -0.5834 7.1259 4.7462 40 1 1.9897 4.4526 4.9193 41 1 2.5796 4.2454 3.2588 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000908342425.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:19 Heat of formation + Delta-G solvation = -12.277785 kcal Electronic energy + Delta-G solvation = -22663.205134 eV Core-core repulsion = 19410.002305 eV Total energy + Delta-G solvation = -3253.202829 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 316.102 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.87184 -37.98334 -37.02764 -35.16594 -34.95879 -33.64352 -30.58136 -29.47189 -28.70373 -26.87631 -25.15860 -24.46231 -23.38600 -21.09754 -19.93467 -18.59988 -18.37748 -17.95849 -17.51228 -17.38643 -17.06799 -16.59250 -16.22260 -15.86742 -15.72337 -15.32706 -15.12647 -14.79035 -14.49779 -14.36695 -14.18108 -14.05265 -13.47657 -13.22119 -13.09025 -13.02159 -12.86141 -12.70436 -12.45246 -12.28758 -12.19016 -12.14579 -11.68467 -11.30809 -10.91256 -10.66561 -10.64442 -10.27977 -9.44101 -9.37187 -9.00498 -8.87440 -8.22702 -6.37393 0.49094 0.61796 1.30539 1.33958 1.35701 1.38384 1.44830 1.47973 1.85001 2.13885 2.37347 2.74349 3.06974 3.66305 3.78681 3.87620 3.95968 4.08047 4.10914 4.12440 4.16731 4.29202 4.31691 4.35503 4.50657 4.56164 4.67561 4.74407 4.81772 4.98944 5.09973 5.23809 5.46864 5.56137 5.73977 5.78467 5.83175 5.86056 6.06410 6.70327 6.81053 7.28833 7.52310 8.84388 Molecular weight = 316.10amu Principal moments of inertia in cm(-1) A = 0.014450 B = 0.004096 C = 0.003551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.186538 B = 6833.866872 C = 7882.429010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.189 4.189 3 C 0.134 3.866 4 N -0.601 5.601 5 C 0.265 3.735 6 C -0.540 4.540 7 H 0.052 0.948 8 C 0.009 3.991 9 N -0.928 5.928 10 Si 0.965 3.035 11 H -0.281 1.281 12 H -0.274 1.274 13 H -0.262 1.262 14 C 0.496 3.504 15 O -0.576 6.576 16 C 0.065 3.935 17 N -0.551 5.551 18 C 0.109 3.891 19 S -0.256 6.256 20 C -0.077 4.077 21 C -0.065 4.065 22 S -0.334 6.334 23 C 0.132 3.868 24 H 0.119 0.881 25 H 0.114 0.886 26 H 0.092 0.908 27 H 0.100 0.900 28 H 0.077 0.923 29 H -0.005 1.005 30 H 0.020 0.980 31 H 0.267 0.733 32 H 0.083 0.917 33 H 0.127 0.873 34 H 0.088 0.912 35 H 0.124 0.876 36 H 0.145 0.855 37 H 0.104 0.896 38 H 0.091 0.909 39 H 0.141 0.859 40 H 0.095 0.905 41 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.268 8.720 4.474 25.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.208 4.208 3 C 0.012 3.988 4 N -0.332 5.332 5 C 0.144 3.856 6 C -0.579 4.579 7 H 0.070 0.930 8 C -0.190 4.190 9 N -0.568 5.568 10 Si 0.789 3.211 11 H -0.207 1.207 12 H -0.199 1.199 13 H -0.186 1.186 14 C 0.284 3.716 15 O -0.456 6.456 16 C -0.068 4.068 17 N -0.278 5.278 18 C -0.129 4.129 19 S -0.028 6.028 20 C -0.226 4.226 21 C -0.214 4.214 22 S -0.111 6.111 23 C -0.106 4.106 24 H 0.137 0.863 25 H 0.132 0.868 26 H 0.110 0.890 27 H 0.118 0.882 28 H 0.096 0.904 29 H 0.014 0.986 30 H 0.038 0.962 31 H 0.076 0.924 32 H 0.101 0.899 33 H 0.145 0.855 34 H 0.106 0.894 35 H 0.142 0.858 36 H 0.163 0.837 37 H 0.123 0.877 38 H 0.110 0.890 39 H 0.158 0.842 40 H 0.113 0.887 41 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -22.482 8.377 5.271 24.565 hybrid contribution 1.202 0.462 -0.825 1.530 sum -21.280 8.839 4.446 23.468 Atomic orbital electron populations 1.24058 0.94328 1.03585 0.97657 1.23242 0.97065 0.98003 1.02525 1.20801 0.91859 0.96561 0.89580 1.48225 1.13316 1.60945 1.10752 1.18673 0.78214 0.93779 0.94976 1.21686 0.94321 0.96092 1.45806 0.92980 1.25830 0.99480 0.98305 0.95375 1.70055 1.14613 1.22217 1.49924 0.85458 0.78362 0.79029 0.78239 1.20683 1.19918 1.18607 1.21231 0.90438 0.77967 0.81969 1.90646 1.56921 1.56952 1.41034 1.21885 0.93713 1.00940 0.90290 1.59130 1.21788 1.21767 1.25103 1.23743 0.88452 1.04782 0.95879 1.87213 1.85405 1.16603 1.13562 1.22308 1.00274 0.93181 1.06871 1.22160 1.01013 1.03364 0.94847 1.87196 1.55821 1.47860 1.20244 1.23823 0.96642 0.85563 1.04590 0.86302 0.86750 0.88962 0.88173 0.90430 0.98647 0.96166 0.92435 0.89905 0.85475 0.89450 0.85806 0.83718 0.87732 0.88999 0.84175 0.88659 0.89926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.86 14.15 67.78 0.96 -1.90 16 2 C -0.19 -4.96 9.85 25.65 0.25 -4.71 16 3 C 0.13 4.20 5.67 85.64 0.49 4.69 16 4 N -0.60 -25.74 2.44 -830.52 -2.03 -27.76 16 5 C 0.27 14.56 5.16 85.63 0.44 15.00 16 6 C -0.54 -31.60 9.39 25.60 0.24 -31.36 16 7 H 0.05 3.01 7.81 -2.91 -0.02 2.99 16 8 C 0.01 0.53 5.46 84.65 0.46 0.99 16 9 N -0.93 -57.03 13.29 21.45 0.28 -56.74 16 10 Si 0.96 45.62 29.54 68.60 2.03 47.65 16 11 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 12 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 13 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 14 C 0.50 20.85 7.09 87.66 0.62 21.48 16 15 O -0.58 -30.45 15.33 -3.02 -0.05 -30.50 16 16 C 0.06 1.84 4.24 85.56 0.36 2.21 16 17 N -0.55 -15.54 3.87 -934.37 -3.62 -19.16 16 18 C 0.11 2.22 5.14 127.66 0.66 2.88 16 19 S -0.26 -4.99 21.32 -56.49 -1.20 -6.19 16 20 C -0.08 -0.90 5.62 69.28 0.39 -0.51 16 21 C -0.06 -0.90 5.62 69.28 0.39 -0.51 16 22 S -0.33 -7.55 21.21 -56.49 -1.20 -8.75 16 23 C 0.13 3.91 5.08 127.66 0.65 4.56 16 24 H 0.12 1.60 7.84 -2.91 -0.02 1.57 16 25 H 0.11 1.71 8.06 -2.91 -0.02 1.68 16 26 H 0.09 2.76 8.06 -2.91 -0.02 2.74 16 27 H 0.10 2.45 5.94 -2.39 -0.01 2.44 16 28 H 0.08 2.62 8.07 -2.39 -0.02 2.60 16 29 H 0.00 -0.29 7.42 -2.38 -0.02 -0.31 16 30 H 0.02 1.14 8.07 -2.39 -0.02 1.12 16 31 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 32 H 0.08 2.14 6.86 -2.39 -0.02 2.12 16 33 H 0.13 2.87 7.59 -2.39 -0.02 2.85 16 34 H 0.09 1.45 7.63 -2.52 -0.02 1.43 16 35 H 0.12 2.35 8.12 -2.52 -0.02 2.33 16 36 H 0.15 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.10 1.06 7.99 -2.39 -0.02 1.04 16 38 H 0.09 1.40 8.00 -2.39 -0.02 1.38 16 39 H 0.14 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.10 2.89 7.65 -2.52 -0.02 2.87 16 41 H 0.08 3.06 6.94 -2.52 -0.02 3.05 16 Total: -1.00 -76.40 357.44 1.12 -75.28 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: 1.00 Total: 13.39 kcal Atomic # 6 Polarization: 6.89 SS G_CDS: 5.91 Total: 12.80 kcal Atomic # 7 Polarization: -98.31 SS G_CDS: -5.36 Total: -103.67 kcal Atomic # 8 Polarization: -30.45 SS G_CDS: -0.05 Total: -30.50 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.65 kcal Atomic # 16 Polarization: -12.54 SS G_CDS: -2.40 Total: -14.94 kcal Total: -76.40 1.12 -75.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000908342425.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.997 kcal (2) G-P(sol) polarization free energy of solvation -76.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds