Wall clock time and date at job start Tue Mar 31 2020 11:55:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34231 * 117.00094 * 2 1 4 4 O 1.20830 * 119.99886 * 0.02562 * 3 2 1 5 5 C 1.50697 * 120.00060 * 179.97438 * 3 2 1 6 6 H 1.09005 * 109.47061 * 60.00763 * 5 3 2 7 7 C 1.53004 * 109.47474 * 300.00258 * 5 3 2 8 8 C 1.52998 * 109.47136 * 300.00127 * 7 5 3 9 9 C 1.52995 * 109.47084 * 299.99795 * 8 7 5 10 10 C 1.53001 * 109.47325 * 60.00064 * 9 8 7 11 11 C 1.52998 * 109.46987 * 299.99996 * 10 9 8 12 12 H 1.09003 * 109.47226 * 299.99830 * 11 10 9 13 13 C 1.53001 * 109.46987 * 179.97438 * 11 10 9 14 14 O 1.45193 * 109.47385 * 65.00006 * 13 11 10 15 15 C 1.34233 * 117.00142 * 180.02562 * 14 13 11 16 16 O 1.20821 * 119.99757 * 359.97438 * 15 14 13 17 17 C 1.50701 * 119.99736 * 179.97438 * 15 14 13 18 18 S 1.81001 * 109.46896 * 179.97438 * 17 15 14 19 19 C 1.76201 * 99.99894 * 180.02562 * 18 17 15 20 20 H 1.07991 * 120.00323 * 359.97438 * 19 18 17 21 21 C 1.38805 * 119.99766 * 179.97438 * 19 18 17 22 22 N 1.31633 * 120.00034 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99929 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.46807 * 179.97438 * 23 21 19 25 25 H 1.48497 * 109.46906 * 300.00462 * 23 21 19 26 26 H 1.48498 * 109.47018 * 60.00200 * 23 21 19 27 27 H 1.09004 * 109.47223 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46897 * 299.99704 * 1 2 3 29 29 H 1.09006 * 109.47418 * 59.99707 * 1 2 3 30 30 H 1.08999 * 109.46648 * 60.00101 * 7 5 3 31 31 H 1.08996 * 109.47167 * 179.97438 * 7 5 3 32 32 H 1.09003 * 109.47226 * 59.99823 * 8 7 5 33 33 H 1.09000 * 109.47056 * 179.97438 * 8 7 5 34 34 H 1.09003 * 109.47177 * 179.97438 * 9 8 7 35 35 H 1.09003 * 109.47111 * 300.00098 * 9 8 7 36 36 H 1.08999 * 109.47006 * 179.97438 * 10 9 8 37 37 H 1.09003 * 109.46999 * 59.99965 * 10 9 8 38 38 H 1.09008 * 109.47179 * 304.99906 * 13 11 10 39 39 H 1.09002 * 109.47023 * 185.00286 * 13 11 10 40 40 H 1.09001 * 109.47454 * 60.00204 * 17 15 14 41 41 H 1.09003 * 109.47322 * 299.99833 * 17 15 14 42 42 H 0.97001 * 119.99662 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9564 0.7807 -0.8893 7 6 4.1129 0.5815 1.2502 8 6 3.5654 1.2752 2.4991 9 6 3.9992 2.7424 2.4990 10 6 3.4526 3.4358 1.2495 11 6 4.0001 2.7421 0.0006 12 1 5.0886 2.7991 0.0010 13 6 3.4530 3.4351 -1.2489 14 8 3.9610 4.7939 -1.3104 15 6 3.5723 5.5432 -2.3541 16 8 2.8323 5.0789 -3.1888 17 6 4.0587 6.9636 -2.4846 18 16 3.3653 7.7034 -3.9839 19 6 4.0779 9.3121 -3.8889 20 1 4.7264 9.5677 -3.0641 21 6 3.8056 10.2510 -4.8744 22 7 3.0147 9.9397 -5.8796 23 14 4.5604 11.9568 -4.7734 24 1 4.1172 12.7639 -5.9384 25 1 4.1235 12.6177 -3.5175 26 1 6.0411 11.8443 -4.7843 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 3.8039 -0.4638 1.2501 31 1 5.2014 0.6382 1.2503 32 1 2.4769 1.2182 2.4987 33 1 3.9545 0.7810 3.3893 34 1 3.6088 3.2367 3.3886 35 1 5.0877 2.7994 2.4994 36 1 3.7613 4.4812 1.2498 37 1 2.3641 3.3788 1.2491 38 1 2.3640 3.4560 -1.2055 39 1 3.7708 2.8879 -2.1365 40 1 5.1470 6.9708 -2.5462 41 1 3.7402 7.5381 -1.6147 42 1 2.8242 10.5959 -6.5680 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000908869166.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:39 Heat of formation + Delta-G solvation = -190.774903 kcal Electronic energy + Delta-G solvation = -24466.318380 eV Core-core repulsion = 20730.329713 eV Total energy + Delta-G solvation = -3735.988667 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.122 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.45616 -39.86770 -38.46755 -36.52427 -35.98414 -32.45796 -32.32730 -31.64600 -29.63362 -28.09976 -26.19434 -25.48320 -23.94702 -22.05513 -21.61416 -20.74710 -19.95887 -17.87313 -17.63018 -17.12255 -16.80855 -16.49803 -16.14824 -15.87186 -15.25646 -14.82359 -14.61134 -14.27106 -14.17932 -14.00453 -13.59279 -13.35128 -12.85068 -12.78866 -12.60275 -12.46955 -12.44304 -12.26854 -11.94489 -11.80176 -11.34718 -11.25674 -11.07348 -11.04428 -10.99524 -10.81196 -10.54134 -10.45715 -10.23978 -9.92468 -9.90715 -9.87113 -9.08168 -8.32190 -6.56781 -6.24426 -3.96784 1.92791 2.40387 2.70724 2.76786 3.23622 3.25549 3.29097 3.55257 4.16803 4.18202 4.26895 4.31974 4.67896 4.75664 4.80975 4.83136 4.91037 4.95439 5.06322 5.10332 5.11096 5.19586 5.24576 5.28927 5.39922 5.42049 5.51792 5.60589 5.69146 5.74636 5.81971 5.83410 5.87118 5.96574 6.04580 6.12850 6.17388 6.42676 6.81869 7.49931 7.57668 8.27596 8.32931 9.20731 10.83050 Molecular weight = 316.12amu Principal moments of inertia in cm(-1) A = 0.026211 B = 0.002563 C = 0.002416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.004936 B =10922.015294 C =11586.767128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.359 6.359 3 C 0.463 3.537 4 O -0.491 6.491 5 C -0.074 4.074 6 H 0.113 0.887 7 C -0.108 4.108 8 C -0.125 4.125 9 C -0.120 4.120 10 C -0.130 4.130 11 C -0.069 4.069 12 H 0.096 0.904 13 C 0.057 3.943 14 O -0.358 6.358 15 C 0.478 3.522 16 O -0.489 6.489 17 C -0.128 4.128 18 S -0.059 6.059 19 C -0.536 4.536 20 H 0.075 0.925 21 C 0.074 3.926 22 N -0.868 5.868 23 Si 0.922 3.078 24 H -0.283 1.283 25 H -0.273 1.273 26 H -0.273 1.273 27 H 0.100 0.900 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.057 0.943 33 H 0.068 0.932 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.075 0.925 37 H 0.087 0.913 38 H 0.093 0.907 39 H 0.062 0.938 40 H 0.102 0.898 41 H 0.102 0.898 42 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.372 -21.896 17.220 27.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.276 6.276 3 C 0.306 3.694 4 O -0.378 6.378 5 C -0.093 4.093 6 H 0.131 0.869 7 C -0.145 4.145 8 C -0.162 4.162 9 C -0.158 4.158 10 C -0.168 4.168 11 C -0.087 4.087 12 H 0.114 0.886 13 C -0.017 4.017 14 O -0.276 6.276 15 C 0.320 3.680 16 O -0.375 6.375 17 C -0.276 4.276 18 S 0.167 5.833 19 C -0.684 4.684 20 H 0.093 0.907 21 C -0.135 4.135 22 N -0.503 5.503 23 Si 0.748 3.252 24 H -0.208 1.208 25 H -0.198 1.198 26 H -0.199 1.199 27 H 0.119 0.881 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.097 0.903 31 H 0.101 0.899 32 H 0.076 0.924 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.094 0.906 37 H 0.105 0.895 38 H 0.111 0.889 39 H 0.081 0.919 40 H 0.120 0.880 41 H 0.120 0.880 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.113 -22.165 16.027 27.353 hybrid contribution 0.978 1.537 0.808 1.993 sum 1.091 -20.628 16.835 26.649 Atomic orbital electron populations 1.23288 0.76240 1.03663 1.02809 1.86491 1.23488 1.33502 1.84109 1.23764 0.92009 0.81392 0.72248 1.90624 1.67123 1.35736 1.44293 1.21135 0.87572 0.98262 1.02365 0.86946 1.21537 1.01523 0.99412 0.92074 1.21618 1.00668 0.96311 0.97647 1.21573 1.00985 0.94894 0.98322 1.21850 1.02828 0.99924 0.92154 1.21039 1.01557 0.90944 0.95155 0.88572 1.23342 1.01151 0.79988 0.97227 1.86441 1.68585 1.25537 1.47052 1.23258 0.78162 0.88195 0.78426 1.90659 1.33250 1.72829 1.40754 1.23282 1.05433 0.90924 1.07920 1.85419 1.63721 1.11890 1.22258 1.22809 1.34902 0.97646 1.13043 0.90653 1.25006 0.94954 0.99164 0.94409 1.70008 1.33975 1.35392 1.10918 0.86178 0.79401 0.81811 0.77857 1.20791 1.19845 1.19852 0.88129 0.91873 0.91642 0.90305 0.89902 0.92426 0.91289 0.91767 0.91702 0.90632 0.89492 0.88889 0.91949 0.88006 0.87990 0.92043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.56 101.05 1.07 1.31 16 2 O -0.36 -3.36 10.47 -39.26 -0.41 -3.77 16 3 C 0.46 4.92 5.46 36.00 0.20 5.12 16 4 O -0.49 -6.67 11.12 -18.75 -0.21 -6.88 16 5 C -0.07 -0.62 2.65 -91.77 -0.24 -0.87 16 6 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 7 C -0.11 -0.68 5.39 -26.73 -0.14 -0.82 16 8 C -0.12 -0.88 5.70 -26.73 -0.15 -1.03 16 9 C -0.12 -0.97 5.92 -26.73 -0.16 -1.13 16 10 C -0.13 -1.41 4.83 -26.73 -0.13 -1.53 16 11 C -0.07 -0.71 2.18 -90.62 -0.20 -0.91 16 12 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 13 C 0.06 0.82 4.47 37.16 0.17 0.98 16 14 O -0.36 -6.05 9.76 -39.27 -0.38 -6.44 16 15 C 0.48 9.74 7.98 36.01 0.29 10.03 16 16 O -0.49 -11.42 15.61 -18.75 -0.29 -11.71 16 17 C -0.13 -2.71 6.27 36.01 0.23 -2.48 16 18 S -0.06 -1.62 20.58 -107.50 -2.21 -3.83 16 19 C -0.54 -15.29 9.50 30.94 0.29 -15.00 16 20 H 0.08 2.03 7.80 -52.49 -0.41 1.62 16 21 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 22 N -0.87 -26.14 13.22 55.49 0.73 -25.41 16 23 Si 0.92 21.41 29.55 -169.99 -5.02 16.39 16 24 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 25 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 26 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 27 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.46 8.13 -51.93 -0.42 0.03 16 29 H 0.06 0.53 8.13 -51.93 -0.42 0.10 16 30 H 0.08 0.43 8.11 -51.93 -0.42 0.01 16 31 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.47 7.22 -51.93 -0.37 0.10 16 33 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.08 0.90 7.82 -51.93 -0.41 0.49 16 37 H 0.09 1.10 5.52 -51.93 -0.29 0.82 16 38 H 0.09 1.53 5.64 -51.92 -0.29 1.23 16 39 H 0.06 0.86 8.13 -51.93 -0.42 0.44 16 40 H 0.10 1.98 8.14 -51.91 -0.42 1.56 16 41 H 0.10 2.01 8.14 -51.92 -0.42 1.59 16 42 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 356.13 15.07 5.37 5.37 Total: -1.00 -34.38 356.13 -7.71 -42.09 By element: Atomic # 1 Polarization: 4.90 SS G_CDS: -6.40 Total: -1.50 kcal Atomic # 6 Polarization: -5.42 SS G_CDS: 1.12 Total: -4.30 kcal Atomic # 7 Polarization: -26.14 SS G_CDS: 0.73 Total: -25.41 kcal Atomic # 8 Polarization: -27.50 SS G_CDS: -1.30 Total: -28.80 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -34.38 -7.71 -42.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000908869166.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -148.685 kcal (2) G-P(sol) polarization free energy of solvation -34.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds