Wall clock time and date at job start Tue Mar 31 2020 11:55:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34231 * 117.00094 * 2 1 4 4 O 1.20830 * 119.99886 * 0.02562 * 3 2 1 5 5 C 1.50697 * 120.00060 * 179.97438 * 3 2 1 6 6 H 1.09005 * 109.47061 * 60.00763 * 5 3 2 7 7 C 1.53004 * 109.47474 * 300.00258 * 5 3 2 8 8 C 1.52998 * 109.47136 * 300.00127 * 7 5 3 9 9 C 1.52995 * 109.47084 * 299.99795 * 8 7 5 10 10 C 1.53001 * 109.47325 * 60.00064 * 9 8 7 11 11 C 1.52998 * 109.46987 * 299.99996 * 10 9 8 12 12 H 1.09003 * 109.47226 * 299.99830 * 11 10 9 13 13 C 1.53001 * 109.46987 * 179.97438 * 11 10 9 14 14 O 1.45193 * 109.47385 * 65.00006 * 13 11 10 15 15 C 1.34233 * 117.00142 * 180.02562 * 14 13 11 16 16 O 1.20821 * 119.99757 * 359.97438 * 15 14 13 17 17 C 1.50701 * 119.99736 * 179.97438 * 15 14 13 18 18 S 1.81001 * 109.46896 * 179.97438 * 17 15 14 19 19 C 1.76201 * 99.99894 * 180.02562 * 18 17 15 20 20 H 1.07991 * 120.00323 * 359.97438 * 19 18 17 21 21 C 1.38805 * 119.99766 * 179.97438 * 19 18 17 22 22 N 1.31633 * 120.00034 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99929 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.46807 * 179.97438 * 23 21 19 25 25 H 1.48497 * 109.46906 * 300.00462 * 23 21 19 26 26 H 1.48498 * 109.47018 * 60.00200 * 23 21 19 27 27 H 1.09004 * 109.47223 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46897 * 299.99704 * 1 2 3 29 29 H 1.09006 * 109.47418 * 59.99707 * 1 2 3 30 30 H 1.08999 * 109.46648 * 60.00101 * 7 5 3 31 31 H 1.08996 * 109.47167 * 179.97438 * 7 5 3 32 32 H 1.09003 * 109.47226 * 59.99823 * 8 7 5 33 33 H 1.09000 * 109.47056 * 179.97438 * 8 7 5 34 34 H 1.09003 * 109.47177 * 179.97438 * 9 8 7 35 35 H 1.09003 * 109.47111 * 300.00098 * 9 8 7 36 36 H 1.08999 * 109.47006 * 179.97438 * 10 9 8 37 37 H 1.09003 * 109.46999 * 59.99965 * 10 9 8 38 38 H 1.09008 * 109.47179 * 304.99906 * 13 11 10 39 39 H 1.09002 * 109.47023 * 185.00286 * 13 11 10 40 40 H 1.09001 * 109.47454 * 60.00204 * 17 15 14 41 41 H 1.09003 * 109.47322 * 299.99833 * 17 15 14 42 42 H 0.97001 * 119.99662 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9564 0.7807 -0.8893 7 6 4.1129 0.5815 1.2502 8 6 3.5654 1.2752 2.4991 9 6 3.9992 2.7424 2.4990 10 6 3.4526 3.4358 1.2495 11 6 4.0001 2.7421 0.0006 12 1 5.0886 2.7991 0.0010 13 6 3.4530 3.4351 -1.2489 14 8 3.9610 4.7939 -1.3104 15 6 3.5723 5.5432 -2.3541 16 8 2.8323 5.0789 -3.1888 17 6 4.0587 6.9636 -2.4846 18 16 3.3653 7.7034 -3.9839 19 6 4.0779 9.3121 -3.8889 20 1 4.7264 9.5677 -3.0641 21 6 3.8056 10.2510 -4.8744 22 7 3.0147 9.9397 -5.8796 23 14 4.5604 11.9568 -4.7734 24 1 4.1172 12.7639 -5.9384 25 1 4.1235 12.6177 -3.5175 26 1 6.0411 11.8443 -4.7843 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 3.8039 -0.4638 1.2501 31 1 5.2014 0.6382 1.2503 32 1 2.4769 1.2182 2.4987 33 1 3.9545 0.7810 3.3893 34 1 3.6088 3.2367 3.3886 35 1 5.0877 2.7994 2.4994 36 1 3.7613 4.4812 1.2498 37 1 2.3641 3.3788 1.2491 38 1 2.3640 3.4560 -1.2055 39 1 3.7708 2.8879 -2.1365 40 1 5.1470 6.9708 -2.5462 41 1 3.7402 7.5381 -1.6147 42 1 2.8242 10.5959 -6.5680 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000908869166.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:38 Heat of formation + Delta-G solvation = -210.657314 kcal Electronic energy + Delta-G solvation = -24467.180546 eV Core-core repulsion = 20730.329713 eV Total energy + Delta-G solvation = -3736.850833 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.122 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.29715 -41.36436 -39.27567 -37.48393 -37.32855 -34.61918 -33.21383 -32.36094 -31.25496 -28.76293 -27.76703 -27.09754 -24.63414 -23.08422 -22.32587 -22.11458 -20.76115 -19.88891 -18.66066 -18.40978 -17.82749 -17.58705 -17.32462 -16.96059 -16.89560 -16.22516 -16.06592 -15.46525 -15.07450 -14.92247 -14.61659 -14.56532 -14.31395 -13.96046 -13.69386 -13.46353 -13.21549 -13.17797 -13.04248 -12.92414 -12.86953 -12.86138 -12.66691 -12.07340 -12.00008 -11.85213 -11.81866 -11.65668 -11.45980 -11.16508 -11.15152 -11.03462 -10.85351 -10.39685 -8.75586 -8.37934 -6.18476 1.00715 1.10671 1.14148 1.40345 1.44653 1.53720 1.71690 1.87254 2.23588 2.96879 3.22449 3.43406 3.49487 3.59556 3.88122 3.98665 4.06656 4.13435 4.15970 4.25998 4.26386 4.28595 4.35322 4.39992 4.41515 4.48950 4.54159 4.63870 4.67688 4.89262 4.92075 5.09590 5.17919 5.20343 5.27071 5.30880 5.36220 5.38588 5.39946 5.63903 6.17251 6.67685 6.71167 7.03227 8.71264 Molecular weight = 316.12amu Principal moments of inertia in cm(-1) A = 0.026211 B = 0.002563 C = 0.002416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.004936 B =10922.015294 C =11586.767128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.358 6.358 3 C 0.459 3.541 4 O -0.529 6.529 5 C -0.073 4.073 6 H 0.134 0.866 7 C -0.102 4.102 8 C -0.124 4.124 9 C -0.115 4.115 10 C -0.131 4.131 11 C -0.061 4.061 12 H 0.120 0.880 13 C 0.052 3.948 14 O -0.345 6.345 15 C 0.485 3.515 16 O -0.525 6.525 17 C -0.106 4.106 18 S -0.141 6.141 19 C -0.549 4.549 20 H 0.087 0.913 21 C 0.015 3.985 22 N -0.911 5.911 23 Si 1.001 2.999 24 H -0.278 1.278 25 H -0.262 1.262 26 H -0.260 1.260 27 H 0.133 0.867 28 H 0.060 0.940 29 H 0.052 0.948 30 H 0.092 0.908 31 H 0.107 0.893 32 H 0.038 0.962 33 H 0.089 0.911 34 H 0.062 0.938 35 H 0.082 0.918 36 H 0.059 0.941 37 H 0.061 0.939 38 H 0.069 0.931 39 H 0.067 0.933 40 H 0.125 0.875 41 H 0.120 0.880 42 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.669 -22.762 19.078 29.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.274 6.274 3 C 0.304 3.696 4 O -0.419 6.419 5 C -0.092 4.092 6 H 0.152 0.848 7 C -0.139 4.139 8 C -0.162 4.162 9 C -0.153 4.153 10 C -0.168 4.168 11 C -0.079 4.079 12 H 0.138 0.862 13 C -0.022 4.022 14 O -0.262 6.262 15 C 0.328 3.672 16 O -0.414 6.414 17 C -0.255 4.255 18 S 0.086 5.914 19 C -0.696 4.696 20 H 0.105 0.895 21 C -0.190 4.190 22 N -0.547 5.547 23 Si 0.823 3.177 24 H -0.203 1.203 25 H -0.187 1.187 26 H -0.185 1.185 27 H 0.151 0.849 28 H 0.079 0.921 29 H 0.071 0.929 30 H 0.111 0.889 31 H 0.125 0.875 32 H 0.057 0.943 33 H 0.108 0.892 34 H 0.081 0.919 35 H 0.100 0.900 36 H 0.077 0.923 37 H 0.080 0.920 38 H 0.087 0.913 39 H 0.086 0.914 40 H 0.143 0.857 41 H 0.138 0.862 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.420 -23.068 17.917 29.309 hybrid contribution 0.195 1.673 0.306 1.712 sum 2.615 -21.395 18.223 28.225 Atomic orbital electron populations 1.23497 0.75335 1.05599 1.02101 1.86486 1.24443 1.32813 1.83677 1.24330 0.93040 0.81131 0.71120 1.90627 1.68131 1.36975 1.46121 1.21279 0.86001 0.97109 1.04777 0.84803 1.21587 1.02778 0.99539 0.89964 1.21628 0.99670 0.95742 0.99140 1.21547 1.01816 0.95362 0.96554 1.21803 1.01445 0.99541 0.94049 1.21088 1.02585 0.91713 0.92550 0.86235 1.23644 1.00142 0.78600 0.99778 1.86424 1.67868 1.26786 1.45118 1.23062 0.77420 0.88154 0.78580 1.90651 1.34926 1.73535 1.42285 1.23081 1.06243 0.91270 1.04879 1.85567 1.65445 1.13415 1.26993 1.23164 1.35082 0.97719 1.13646 0.89507 1.26157 0.95200 1.03931 0.93717 1.70169 1.35544 1.37093 1.11903 0.84960 0.78844 0.75688 0.78246 1.20312 1.18664 1.18468 0.84855 0.92128 0.92889 0.88940 0.87458 0.94277 0.89228 0.91901 0.89984 0.92269 0.92004 0.91274 0.91439 0.85687 0.86227 0.91829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.56 113.37 1.20 1.60 16 2 O -0.36 -6.37 10.47 -51.42 -0.54 -6.91 16 3 C 0.46 9.60 5.46 71.23 0.39 9.99 16 4 O -0.53 -15.02 11.12 21.95 0.24 -14.78 16 5 C -0.07 -1.07 2.65 -11.54 -0.03 -1.10 16 6 H 0.13 1.44 8.14 -2.38 -0.02 1.42 16 7 C -0.10 -0.92 5.39 30.60 0.16 -0.75 16 8 C -0.12 -1.43 5.70 30.59 0.17 -1.26 16 9 C -0.12 -1.63 5.92 30.59 0.18 -1.45 16 10 C -0.13 -2.76 4.83 30.59 0.15 -2.61 16 11 C -0.06 -1.17 2.18 -10.79 -0.02 -1.20 16 12 H 0.12 1.78 8.14 -2.39 -0.02 1.76 16 13 C 0.05 1.49 4.47 71.98 0.32 1.81 16 14 O -0.35 -11.50 9.76 -51.45 -0.50 -12.00 16 15 C 0.49 19.88 7.98 71.24 0.57 20.45 16 16 O -0.53 -25.26 15.61 21.98 0.34 -24.91 16 17 C -0.11 -4.47 6.27 71.24 0.45 -4.02 16 18 S -0.14 -7.91 20.58 -56.49 -1.16 -9.07 16 19 C -0.55 -31.36 9.50 67.96 0.65 -30.71 16 20 H 0.09 4.59 7.80 -2.92 -0.02 4.56 16 21 C 0.01 0.85 5.49 84.86 0.47 1.32 16 22 N -0.91 -55.84 13.22 21.65 0.29 -55.55 16 23 Si 1.00 43.48 29.55 68.60 2.03 45.51 16 24 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 25 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 26 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 27 H 0.13 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.06 0.89 8.13 -2.39 -0.02 0.87 16 29 H 0.05 0.89 8.13 -2.38 -0.02 0.87 16 30 H 0.09 0.66 8.11 -2.39 -0.02 0.64 16 31 H 0.11 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.04 0.60 7.22 -2.39 -0.02 0.58 16 33 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.06 1.40 7.82 -2.39 -0.02 1.38 16 37 H 0.06 1.64 5.52 -2.39 -0.01 1.62 16 38 H 0.07 2.37 5.64 -2.38 -0.01 2.36 16 39 H 0.07 1.84 8.13 -2.39 -0.02 1.83 16 40 H 0.13 4.68 8.14 -2.39 -0.02 4.66 16 41 H 0.12 4.61 8.14 -2.39 -0.02 4.59 16 42 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 Total: -1.00 -77.35 356.13 6.36 -70.99 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: 1.01 Total: 14.68 kcal Atomic # 6 Polarization: -12.60 SS G_CDS: 4.65 Total: -7.95 kcal Atomic # 7 Polarization: -55.84 SS G_CDS: 0.29 Total: -55.55 kcal Atomic # 8 Polarization: -58.15 SS G_CDS: -0.45 Total: -58.60 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Atomic # 16 Polarization: -7.91 SS G_CDS: -1.16 Total: -9.07 kcal Total: -77.35 6.36 -70.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000908869166.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.669 kcal (2) G-P(sol) polarization free energy of solvation -77.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -217.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -210.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds