Wall clock time and date at job start Tue Mar 31 2020 10:57:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86795 * 119.99895 * 2 1 4 4 H 1.48502 * 109.47045 * 239.99750 * 3 2 1 5 5 H 1.48498 * 109.47307 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47093 * 120.00402 * 3 2 1 7 7 C 1.37876 * 119.99633 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99671 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00287 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47379 * 179.97438 * 9 7 2 11 11 N 1.46901 * 109.47317 * 179.97438 * 10 9 7 12 12 C 1.46896 * 110.99913 * 180.02562 * 11 10 9 13 13 H 1.09002 * 109.47220 * 325.00418 * 12 11 10 14 14 C 1.50701 * 109.47239 * 205.00362 * 12 11 10 15 15 C 1.38244 * 119.98393 * 319.72891 * 14 12 11 16 16 C 1.38220 * 120.01117 * 179.72629 * 15 14 12 17 17 C 1.38349 * 119.98209 * 0.54511 * 16 15 14 18 18 Cl 1.73605 * 120.01015 * 179.74993 * 17 16 15 19 19 C 1.38347 * 119.97977 * 359.72983 * 17 16 15 20 20 C 1.38216 * 119.98369 * 359.97438 * 19 17 16 21 21 C 1.50703 * 109.46997 * 85.00438 * 12 11 10 22 22 C 1.38221 * 119.61741 * 244.72952 * 21 12 11 23 23 C 1.38631 * 119.16156 * 179.75248 * 22 21 12 24 24 C 1.38679 * 118.41891 * 0.50987 * 23 22 21 25 25 C 1.38181 * 119.15926 * 359.72912 * 24 23 22 26 26 N 1.31855 * 119.61618 * 64.99635 * 21 12 11 27 27 H 0.97006 * 120.00110 * 359.97438 * 1 2 3 28 28 H 1.09010 * 109.46927 * 60.00049 * 9 7 2 29 29 H 1.09000 * 109.47453 * 300.00712 * 9 7 2 30 30 H 1.09007 * 109.46416 * 60.00028 * 10 9 7 31 31 H 1.08990 * 109.47033 * 300.00725 * 10 9 7 32 32 H 1.00896 * 111.00002 * 303.96348 * 11 10 9 33 33 H 1.07999 * 119.99448 * 0.02562 * 15 14 12 34 34 H 1.07996 * 120.00776 * 180.27579 * 16 15 14 35 35 H 1.07999 * 120.01117 * 179.97438 * 19 17 16 36 36 H 1.08008 * 119.99273 * 180.02562 * 20 19 17 37 37 H 1.08000 * 120.42134 * 359.97438 * 22 21 12 38 38 H 1.08000 * 120.79504 * 180.25728 * 23 22 21 39 39 H 1.07999 * 120.42025 * 179.70977 * 24 23 22 40 40 H 1.08007 * 119.61321 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 7 1.5106 -4.9343 -0.0012 12 6 2.4351 -6.0759 -0.0018 13 1 3.3175 -5.8285 -0.5918 14 6 1.7501 -7.2767 -0.6018 15 6 0.4256 -7.5373 -0.3034 16 6 -0.2048 -8.6353 -0.8578 17 6 0.4931 -9.4799 -1.7026 18 17 -0.2962 -10.8628 -2.3942 19 6 1.8202 -9.2217 -1.9963 20 6 2.4478 -8.1200 -1.4461 21 6 2.8483 -6.3883 1.4134 22 6 4.1695 -6.2339 1.7890 23 6 4.5383 -6.5191 3.0946 24 6 3.5620 -6.9611 3.9747 25 6 2.2622 -7.0962 3.5257 26 7 1.9464 -6.8108 2.2774 27 1 -0.4850 0.8401 0.0004 28 1 0.6239 -2.5566 -0.8904 29 1 0.6245 -2.5571 0.8896 30 1 2.8725 -3.6047 0.8878 31 1 2.8711 -3.6039 -0.8921 32 1 0.8750 -4.9844 0.7807 33 1 -0.1180 -6.8802 0.3593 34 1 -1.2408 -8.8364 -0.6281 35 1 2.3656 -9.8809 -2.6554 36 1 3.4837 -7.9181 -1.6757 37 1 4.9046 -5.8920 1.0755 38 1 5.5624 -6.4037 3.4177 39 1 3.8144 -7.1970 4.9979 40 1 1.4958 -7.4395 4.2050 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000926134362.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:57:01 Heat of formation + Delta-G solvation = 45.817250 kcal Electronic energy + Delta-G solvation = -22879.443348 eV Core-core repulsion = 19491.272051 eV Total energy + Delta-G solvation = -3388.171297 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 316.104 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.55509 -39.15673 -36.78234 -35.98574 -33.43952 -32.46053 -31.76940 -31.00155 -30.57271 -28.77204 -25.76032 -24.03611 -23.41703 -22.79038 -22.51998 -20.57226 -20.53945 -17.22266 -17.12277 -16.46423 -16.16506 -15.81678 -15.35551 -15.30533 -14.59842 -14.42034 -14.23835 -13.82900 -13.49078 -13.41330 -13.28083 -13.12496 -12.94930 -12.33383 -12.15979 -11.93596 -11.52148 -11.41037 -11.23434 -11.10742 -10.94307 -10.77405 -10.57997 -10.12234 -9.94771 -9.53572 -9.48055 -9.24011 -9.04305 -8.95949 -8.50467 -8.36663 -7.95822 -6.00804 -4.03779 0.98003 1.21406 1.24831 1.38459 2.11207 3.31980 3.36728 3.38543 3.63190 3.76621 4.24011 4.36435 4.49162 4.76573 4.78244 4.84212 4.91675 5.00384 5.09144 5.12724 5.31424 5.35140 5.41435 5.49476 5.57835 5.64813 5.73984 6.00281 6.04234 6.08908 6.21202 6.25900 6.27328 6.37047 6.60935 6.65102 6.86320 6.91645 7.36583 7.68457 7.75042 7.88401 7.95263 8.05171 8.40503 9.02896 9.59895 11.10513 Molecular weight = 316.10amu Principal moments of inertia in cm(-1) A = 0.011485 B = 0.003389 C = 0.002817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2437.385708 B = 8260.749618 C = 9936.315941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.059 3.941 3 Si 0.893 3.107 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.278 1.278 7 C -0.523 4.523 8 H 0.053 0.947 9 C 0.027 3.973 10 C 0.064 3.936 11 N -0.670 5.670 12 C 0.174 3.826 13 H 0.098 0.902 14 C -0.051 4.051 15 C -0.058 4.058 16 C -0.116 4.116 17 C -0.038 4.038 18 Cl -0.084 7.084 19 C -0.117 4.117 20 C -0.105 4.105 21 C 0.109 3.891 22 C -0.162 4.162 23 C -0.074 4.074 24 C -0.179 4.179 25 C 0.102 3.898 26 N -0.470 5.470 27 H 0.261 0.739 28 H 0.027 0.973 29 H 0.013 0.987 30 H 0.016 0.984 31 H 0.061 0.939 32 H 0.347 0.653 33 H 0.137 0.863 34 H 0.130 0.870 35 H 0.128 0.872 36 H 0.128 0.872 37 H 0.134 0.866 38 H 0.133 0.867 39 H 0.132 0.868 40 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.205 -20.721 2.962 21.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.203 1.203 7 C -0.562 4.562 8 H 0.072 0.928 9 C -0.010 4.010 10 C -0.064 4.064 11 N -0.300 5.300 12 C 0.063 3.937 13 H 0.116 0.884 14 C -0.052 4.052 15 C -0.077 4.077 16 C -0.135 4.135 17 C -0.064 4.064 18 Cl -0.055 7.055 19 C -0.136 4.136 20 C -0.124 4.124 21 C -0.031 4.031 22 C -0.182 4.182 23 C -0.100 4.100 24 C -0.199 4.199 25 C -0.056 4.056 26 N -0.179 5.179 27 H 0.071 0.929 28 H 0.045 0.955 29 H 0.031 0.969 30 H 0.034 0.966 31 H 0.080 0.920 32 H 0.167 0.833 33 H 0.155 0.845 34 H 0.148 0.852 35 H 0.146 0.854 36 H 0.146 0.854 37 H 0.152 0.848 38 H 0.150 0.850 39 H 0.150 0.850 40 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 5.008 -20.789 1.924 21.470 hybrid contribution 1.661 0.990 1.279 2.319 sum 6.670 -19.799 3.203 21.136 Atomic orbital electron populations 1.69962 1.06017 1.26733 1.50380 1.24994 0.94838 0.99182 0.95270 0.86655 0.79581 0.83165 0.78568 1.20187 1.21244 1.20341 1.21104 0.92886 0.90966 1.51203 0.92845 1.19044 0.93954 0.90244 0.97796 1.22252 0.97208 0.88208 0.98693 1.60851 1.18079 1.01104 1.49924 1.19498 0.95752 0.90180 0.88309 0.88352 1.19724 0.94409 0.94975 0.96116 1.20950 0.94052 0.95223 0.97438 1.21059 1.00313 0.94781 0.97307 1.20892 0.93809 0.91447 1.00296 1.98349 1.80705 1.42575 1.83899 1.20878 0.92985 0.98488 1.01234 1.20933 0.99973 0.94245 0.97228 1.22070 0.89834 0.94157 0.97051 1.22012 0.97210 1.01655 0.97371 1.21567 0.99922 0.95331 0.93208 1.22119 0.94728 1.02074 1.00944 1.22746 0.95188 0.95455 0.92188 1.67394 1.37166 1.10412 1.02955 0.92900 0.95493 0.96858 0.96581 0.92034 0.83343 0.84520 0.85214 0.85370 0.85449 0.84842 0.84955 0.85009 0.82820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.84 13.29 55.43 0.74 -26.11 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.52 -14.71 9.11 -34.44 -0.31 -15.02 16 8 H 0.05 1.45 7.74 -52.48 -0.41 1.04 16 9 C 0.03 0.70 5.23 -27.88 -0.15 0.55 16 10 C 0.06 1.31 5.42 -3.82 -0.02 1.29 16 11 N -0.67 -11.69 5.71 -109.19 -0.62 -12.31 16 12 C 0.17 2.48 2.51 -70.02 -0.18 2.30 16 13 H 0.10 1.30 7.39 -51.93 -0.38 0.92 16 14 C -0.05 -0.69 4.87 -104.62 -0.51 -1.20 16 15 C -0.06 -0.79 8.78 -39.59 -0.35 -1.14 16 16 C -0.12 -1.45 9.83 -39.55 -0.39 -1.84 16 17 C -0.04 -0.46 6.32 -39.50 -0.25 -0.71 16 18 Cl -0.08 -0.93 28.96 -51.86 -1.50 -2.43 16 19 C -0.12 -1.34 9.83 -39.55 -0.39 -1.73 16 20 C -0.11 -1.24 9.67 -39.59 -0.38 -1.62 16 21 C 0.11 1.49 5.36 -82.59 -0.44 1.05 16 22 C -0.16 -1.94 9.71 -39.44 -0.38 -2.32 16 23 C -0.07 -0.77 10.18 -39.27 -0.40 -1.17 16 24 C -0.18 -1.79 10.11 -39.44 -0.40 -2.19 16 25 C 0.10 1.17 11.18 -17.55 -0.20 0.97 16 26 N -0.47 -6.51 9.24 -9.47 -0.09 -6.59 16 27 H 0.26 7.43 8.31 -40.82 -0.34 7.10 16 28 H 0.03 0.75 8.14 -51.92 -0.42 0.33 16 29 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.02 0.33 8.00 -51.93 -0.42 -0.09 16 31 H 0.06 1.23 8.06 -51.93 -0.42 0.81 16 32 H 0.35 6.23 7.57 -39.29 -0.30 5.93 16 33 H 0.14 1.92 7.25 -52.49 -0.38 1.54 16 34 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 35 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 36 H 0.13 1.22 8.04 -52.48 -0.42 0.80 16 37 H 0.13 1.36 7.95 -52.49 -0.42 0.95 16 38 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 39 H 0.13 0.95 8.06 -52.49 -0.42 0.52 16 40 H 0.15 1.36 8.06 -52.48 -0.42 0.94 16 LS Contribution 358.49 15.07 5.40 5.40 Total: -1.00 -31.20 358.49 -11.17 -42.37 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -5.24 Total: 4.32 kcal Atomic # 6 Polarization: -16.35 SS G_CDS: -4.84 Total: -21.19 kcal Atomic # 7 Polarization: -45.04 SS G_CDS: 0.03 Total: -45.01 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Atomic # 17 Polarization: -0.93 SS G_CDS: -1.50 Total: -2.43 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.20 -11.17 -42.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000926134362.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.184 kcal (2) G-P(sol) polarization free energy of solvation -31.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.367 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds