Wall clock time and date at job start Tue Mar 31 2020 12:02:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31380 * 1 3 3 Si 1.86799 * 119.99963 * 2 1 4 4 H 1.48499 * 109.47094 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47272 * 300.00299 * 3 2 1 6 6 H 1.48503 * 109.47279 * 59.99978 * 3 2 1 7 7 C 1.39023 * 120.00123 * 179.97438 * 2 1 3 8 8 H 1.07990 * 120.00172 * 189.42107 * 7 2 1 9 9 N 1.36910 * 119.99486 * 9.42860 * 7 2 1 10 10 C 1.34774 * 120.00338 * 44.32275 * 9 7 2 11 11 O 1.21605 * 120.00112 * 4.56906 * 10 9 7 12 12 C 1.47534 * 119.99638 * 184.57128 * 10 9 7 13 13 C 1.40026 * 119.99375 * 318.62156 * 12 10 9 14 14 C 1.37692 * 120.35717 * 179.91559 * 13 12 10 15 15 C 1.38754 * 120.12240 * 359.93550 * 14 13 12 16 16 C 1.40655 * 119.94041 * 0.25676 * 15 14 13 17 17 C 1.38946 * 120.00211 * 359.68149 * 16 15 14 18 18 C 1.47593 * 118.96935 * 179.63034 * 16 15 14 19 19 O 1.21584 * 120.60380 * 227.93775 * 18 16 15 20 20 N 1.35459 * 118.79747 * 47.91467 * 18 16 15 21 21 C 1.46403 * 119.55540 * 4.90613 * 20 18 16 22 22 C 1.52270 * 110.73935 * 284.99698 * 21 20 18 23 23 O 1.35535 * 120.85791 * 180.55341 * 15 14 13 24 24 C 1.46501 * 119.99361 * 224.32063 * 9 7 2 25 25 C 1.53001 * 117.50104 * 5.60311 * 24 9 7 26 26 C 1.52995 * 117.50213 * 296.97971 * 24 9 7 27 27 H 0.97006 * 119.99951 * 4.98762 * 1 2 3 28 28 H 1.07996 * 119.82166 * 359.89106 * 13 12 10 29 29 H 1.07998 * 119.93814 * 179.97438 * 14 13 12 30 30 H 1.07999 * 120.21565 * 180.17255 * 17 16 15 31 31 H 0.97000 * 120.22775 * 184.92786 * 20 18 16 32 32 H 1.08999 * 109.21920 * 45.30575 * 21 20 18 33 33 H 1.09001 * 109.22020 * 164.68836 * 21 20 18 34 34 H 1.09005 * 109.04263 * 165.70350 * 22 21 20 35 35 H 1.09005 * 109.04774 * 284.57598 * 22 21 20 36 36 H 1.09003 * 115.54854 * 151.30371 * 24 9 7 37 37 H 1.09004 * 117.49856 * 359.97438 * 25 24 9 38 38 H 1.09000 * 117.50020 * 145.02021 * 25 24 9 39 39 H 1.08996 * 117.50087 * 214.98342 * 26 24 9 40 40 H 1.09002 * 117.49577 * 359.97327 * 26 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3138 0.0000 0.0000 3 14 2.2478 1.6177 0.0000 4 1 3.7078 1.3464 -0.0006 5 1 1.8890 2.3965 -1.2125 6 1 1.8890 2.3965 1.2125 7 6 2.0089 -1.2040 0.0005 8 1 3.0779 -1.2102 0.1536 9 7 1.3382 -2.3817 -0.1932 10 6 0.4055 -2.4746 -1.1616 11 8 0.2180 -1.5402 -1.9170 12 6 -0.3881 -3.7100 -1.3052 13 6 0.2307 -4.9590 -1.1715 14 6 -0.5031 -6.1167 -1.3024 15 6 -1.8637 -6.0526 -1.5668 16 6 -2.4935 -4.8028 -1.7068 17 6 -1.7546 -3.6337 -1.5737 18 6 -3.9402 -4.7597 -1.9961 19 8 -4.3732 -4.0496 -2.8829 20 7 -4.7767 -5.5261 -1.2559 21 6 -4.2460 -6.2898 -0.1252 22 6 -3.4731 -7.5079 -0.6126 23 8 -2.6024 -7.1826 -1.6875 24 6 1.6344 -3.5408 0.6523 25 6 2.6059 -3.3363 1.8165 26 6 3.0469 -4.1244 0.5815 27 1 -0.4850 0.8369 -0.0730 28 1 1.2893 -5.0146 -0.9651 29 1 -0.0188 -7.0764 -1.1984 30 1 -2.2352 -2.6721 -1.6778 31 1 -5.7210 -5.5688 -1.4737 32 1 -3.5809 -5.6526 0.4576 33 1 -5.0722 -6.6181 0.5055 34 1 -2.8839 -7.9087 0.2122 35 1 -4.1800 -8.2681 -0.9452 36 1 0.8091 -4.2371 0.8015 37 1 3.0249 -2.3394 1.9531 38 1 2.4198 -3.8980 2.7319 39 1 3.1510 -5.2045 0.6844 40 1 3.7557 -3.6461 -0.0945 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930615601.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:00 Heat of formation + Delta-G solvation = -21.291624 kcal Electronic energy + Delta-G solvation = -26877.303288 eV Core-core repulsion = 23045.512766 eV Total energy + Delta-G solvation = -3831.790521 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.97211 -39.10864 -38.38682 -37.04338 -36.03949 -34.95581 -32.88699 -31.46264 -30.84740 -30.44766 -28.87052 -25.35724 -24.74595 -23.22452 -22.43201 -21.78946 -21.18294 -20.51471 -19.54676 -17.95630 -17.46831 -17.00547 -16.42335 -16.21390 -15.88540 -15.65936 -14.86317 -14.67146 -14.34383 -14.11207 -13.94587 -13.70416 -13.40125 -13.37852 -13.11809 -12.75785 -12.56092 -11.93649 -11.86804 -11.74891 -11.27987 -11.07215 -10.98501 -10.92606 -10.71964 -10.47901 -10.21007 -10.07474 -9.87105 -9.79033 -9.20882 -8.83622 -8.81954 -8.40302 -8.09592 -7.13254 -6.14196 -3.98718 0.94167 1.39405 2.70887 3.05091 3.26460 3.34262 3.37210 3.39361 3.77455 4.13460 4.28289 4.43766 4.53616 4.59486 4.72772 4.77800 4.99564 5.08883 5.13104 5.20681 5.39361 5.42212 5.43777 5.52735 5.63362 5.64802 5.73035 5.89885 6.08987 6.13028 6.24697 6.39710 6.42920 6.64860 6.70583 6.75975 6.81258 6.86079 7.01384 7.43070 7.53922 8.15235 8.18058 8.95910 9.06541 9.53259 10.18325 10.90733 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.017488 B = 0.004481 C = 0.003852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.737498 B = 6246.539398 C = 7268.065759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.829 5.829 2 C 0.062 3.938 3 Si 0.914 3.086 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.284 1.284 7 C -0.336 4.336 8 H 0.082 0.918 9 N -0.418 5.418 10 C 0.516 3.484 11 O -0.517 6.517 12 C -0.099 4.099 13 C -0.068 4.068 14 C -0.142 4.142 15 C 0.120 3.880 16 C -0.173 4.173 17 C -0.008 4.008 18 C 0.578 3.422 19 O -0.523 6.523 20 N -0.727 5.727 21 C 0.072 3.928 22 C 0.046 3.954 23 O -0.324 6.324 24 C 0.067 3.933 25 C -0.174 4.174 26 C -0.209 4.209 27 H 0.266 0.734 28 H 0.144 0.856 29 H 0.135 0.865 30 H 0.141 0.859 31 H 0.404 0.596 32 H 0.082 0.918 33 H 0.101 0.899 34 H 0.069 0.931 35 H 0.101 0.899 36 H 0.109 0.891 37 H 0.107 0.893 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.607 -16.543 5.098 17.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.463 5.463 2 C -0.148 4.148 3 Si 0.741 3.259 4 H -0.195 1.195 5 H -0.206 1.206 6 H -0.210 1.210 7 C -0.463 4.463 8 H 0.100 0.900 9 N -0.138 5.138 10 C 0.303 3.697 11 O -0.394 6.394 12 C -0.103 4.103 13 C -0.087 4.087 14 C -0.161 4.161 15 C 0.076 3.924 16 C -0.177 4.177 17 C -0.028 4.028 18 C 0.366 3.634 19 O -0.399 6.399 20 N -0.381 5.381 21 C -0.054 4.054 22 C -0.030 4.030 23 O -0.241 6.241 24 C -0.039 4.039 25 C -0.212 4.212 26 C -0.248 4.248 27 H 0.077 0.923 28 H 0.162 0.838 29 H 0.153 0.847 30 H 0.159 0.841 31 H 0.241 0.759 32 H 0.101 0.899 33 H 0.119 0.881 34 H 0.087 0.913 35 H 0.119 0.881 36 H 0.127 0.873 37 H 0.126 0.874 38 H 0.103 0.897 39 H 0.105 0.895 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -4.917 -15.619 4.184 16.900 hybrid contribution -0.129 0.695 0.265 0.755 sum -5.046 -14.924 4.449 16.370 Atomic orbital electron populations 1.69822 1.06394 1.27789 1.42305 1.25316 0.95031 0.99485 0.95017 0.86101 0.79645 0.82494 0.77644 1.19476 1.20593 1.21012 1.18981 0.91495 0.82515 1.53272 0.90035 1.42644 1.35924 1.08834 1.26374 1.17561 0.83534 0.85857 0.82698 1.90653 1.67277 1.38322 1.43099 1.20638 0.94029 0.95377 1.00233 1.21741 1.00938 0.90741 0.95304 1.20969 0.92721 0.99255 1.03114 1.18785 0.90647 0.84224 0.98745 1.20118 0.93849 0.94212 1.09507 1.21137 0.92529 0.97299 0.91817 1.18405 0.86174 0.78206 0.80652 1.90837 1.78121 1.39612 1.31301 1.45853 1.11592 1.48386 1.32291 1.22008 1.00289 0.93916 0.89141 1.23137 0.92354 0.97163 0.90315 1.85841 1.55591 1.40341 1.42306 1.21975 0.91669 0.93102 0.97180 1.23118 1.04219 1.02173 0.91710 1.23379 1.00426 0.98524 1.02504 0.92341 0.83809 0.84713 0.84089 0.75935 0.89946 0.88052 0.91304 0.88053 0.87315 0.87427 0.89699 0.89539 0.88836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -24.24 11.24 55.50 0.62 -23.62 16 2 C 0.06 1.71 4.67 -17.45 -0.08 1.62 16 3 Si 0.91 21.37 29.57 -169.99 -5.03 16.34 16 4 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 5 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.34 -8.87 7.85 -14.99 -0.12 -8.98 16 8 H 0.08 2.07 7.32 -52.49 -0.38 1.68 16 9 N -0.42 -10.15 2.85 -108.90 -0.31 -10.46 16 10 C 0.52 13.18 6.44 -12.47 -0.08 13.10 16 11 O -0.52 -15.52 14.63 5.27 0.08 -15.44 16 12 C -0.10 -2.04 5.27 -104.98 -0.55 -2.60 16 13 C -0.07 -1.11 7.45 -39.11 -0.29 -1.40 16 14 C -0.14 -1.97 9.98 -39.59 -0.40 -2.36 16 15 C 0.12 1.79 5.55 -38.48 -0.21 1.58 16 16 C -0.17 -3.00 4.82 -104.91 -0.51 -3.51 16 17 C -0.01 -0.16 9.37 -38.86 -0.36 -0.53 16 18 C 0.58 9.79 7.25 -12.14 -0.09 9.70 16 19 O -0.52 -10.86 17.92 5.29 0.09 -10.76 16 20 N -0.73 -8.48 5.43 -61.60 -0.33 -8.81 16 21 C 0.07 0.60 6.28 -4.47 -0.03 0.57 16 22 C 0.05 0.38 6.96 36.78 0.26 0.64 16 23 O -0.32 -4.18 9.89 -18.30 -0.18 -4.36 16 24 C 0.07 1.26 4.38 -67.93 -0.30 0.96 16 25 C -0.17 -2.93 9.80 -26.73 -0.26 -3.19 16 26 C -0.21 -3.26 9.53 -26.73 -0.25 -3.52 16 27 H 0.27 7.50 8.32 -40.82 -0.34 7.16 16 28 H 0.14 2.17 5.53 -52.49 -0.29 1.88 16 29 H 0.14 1.45 8.06 -52.49 -0.42 1.02 16 30 H 0.14 3.17 8.06 -52.49 -0.42 2.75 16 31 H 0.40 3.84 8.95 -40.82 -0.37 3.47 16 32 H 0.08 0.80 7.45 -51.93 -0.39 0.41 16 33 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.11 1.86 5.88 -51.93 -0.31 1.55 16 37 H 0.11 2.02 6.79 -51.93 -0.35 1.66 16 38 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.09 1.58 8.14 -51.93 -0.42 1.16 16 LS Contribution 333.65 15.07 5.03 5.03 Total: -1.00 -35.76 333.65 -7.91 -43.66 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: -4.60 Total: 6.34 kcal Atomic # 6 Polarization: 5.36 SS G_CDS: -3.28 Total: 2.08 kcal Atomic # 7 Polarization: -42.87 SS G_CDS: -0.02 Total: -42.89 kcal Atomic # 8 Polarization: -30.56 SS G_CDS: -0.01 Total: -30.56 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.03 Total: 16.34 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -35.76 -7.91 -43.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930615601.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.372 kcal (2) G-P(sol) polarization free energy of solvation -35.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds