Wall clock time and date at job start Tue Mar 31 2020 12:01:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31380 * 1 3 3 Si 1.86799 * 119.99963 * 2 1 4 4 H 1.48499 * 109.47094 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47272 * 300.00299 * 3 2 1 6 6 H 1.48503 * 109.47279 * 59.99978 * 3 2 1 7 7 C 1.39023 * 120.00123 * 179.97438 * 2 1 3 8 8 H 1.07990 * 120.00172 * 189.42107 * 7 2 1 9 9 N 1.36910 * 119.99486 * 9.42860 * 7 2 1 10 10 C 1.34774 * 120.00338 * 44.32275 * 9 7 2 11 11 O 1.21605 * 120.00112 * 4.56906 * 10 9 7 12 12 C 1.47534 * 119.99638 * 184.57128 * 10 9 7 13 13 C 1.40026 * 119.99375 * 318.62156 * 12 10 9 14 14 C 1.37692 * 120.35717 * 179.91559 * 13 12 10 15 15 C 1.38754 * 120.12240 * 359.93550 * 14 13 12 16 16 C 1.40655 * 119.94041 * 0.25676 * 15 14 13 17 17 C 1.38946 * 120.00211 * 359.68149 * 16 15 14 18 18 C 1.47593 * 118.96935 * 179.63034 * 16 15 14 19 19 O 1.21584 * 120.60380 * 227.93775 * 18 16 15 20 20 N 1.35459 * 118.79747 * 47.91467 * 18 16 15 21 21 C 1.46403 * 119.55540 * 4.90613 * 20 18 16 22 22 C 1.52270 * 110.73935 * 284.99698 * 21 20 18 23 23 O 1.35535 * 120.85791 * 180.55341 * 15 14 13 24 24 C 1.46501 * 119.99361 * 224.32063 * 9 7 2 25 25 C 1.53001 * 117.50104 * 5.60311 * 24 9 7 26 26 C 1.52995 * 117.50213 * 296.97971 * 24 9 7 27 27 H 0.97006 * 119.99951 * 4.98762 * 1 2 3 28 28 H 1.07996 * 119.82166 * 359.89106 * 13 12 10 29 29 H 1.07998 * 119.93814 * 179.97438 * 14 13 12 30 30 H 1.07999 * 120.21565 * 180.17255 * 17 16 15 31 31 H 0.97000 * 120.22775 * 184.92786 * 20 18 16 32 32 H 1.08999 * 109.21920 * 45.30575 * 21 20 18 33 33 H 1.09001 * 109.22020 * 164.68836 * 21 20 18 34 34 H 1.09005 * 109.04263 * 165.70350 * 22 21 20 35 35 H 1.09005 * 109.04774 * 284.57598 * 22 21 20 36 36 H 1.09003 * 115.54854 * 151.30371 * 24 9 7 37 37 H 1.09004 * 117.49856 * 359.97438 * 25 24 9 38 38 H 1.09000 * 117.50020 * 145.02021 * 25 24 9 39 39 H 1.08996 * 117.50087 * 214.98342 * 26 24 9 40 40 H 1.09002 * 117.49577 * 359.97327 * 26 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3138 0.0000 0.0000 3 14 2.2478 1.6177 0.0000 4 1 3.7078 1.3464 -0.0006 5 1 1.8890 2.3965 -1.2125 6 1 1.8890 2.3965 1.2125 7 6 2.0089 -1.2040 0.0005 8 1 3.0779 -1.2102 0.1536 9 7 1.3382 -2.3817 -0.1932 10 6 0.4055 -2.4746 -1.1616 11 8 0.2180 -1.5402 -1.9170 12 6 -0.3881 -3.7100 -1.3052 13 6 0.2307 -4.9590 -1.1715 14 6 -0.5031 -6.1167 -1.3024 15 6 -1.8637 -6.0526 -1.5668 16 6 -2.4935 -4.8028 -1.7068 17 6 -1.7546 -3.6337 -1.5737 18 6 -3.9402 -4.7597 -1.9961 19 8 -4.3732 -4.0496 -2.8829 20 7 -4.7767 -5.5261 -1.2559 21 6 -4.2460 -6.2898 -0.1252 22 6 -3.4731 -7.5079 -0.6126 23 8 -2.6024 -7.1826 -1.6875 24 6 1.6344 -3.5408 0.6523 25 6 2.6059 -3.3363 1.8165 26 6 3.0469 -4.1244 0.5815 27 1 -0.4850 0.8369 -0.0730 28 1 1.2893 -5.0146 -0.9651 29 1 -0.0188 -7.0764 -1.1984 30 1 -2.2352 -2.6721 -1.6778 31 1 -5.7210 -5.5688 -1.4737 32 1 -3.5809 -5.6526 0.4576 33 1 -5.0722 -6.6181 0.5055 34 1 -2.8839 -7.9087 0.2122 35 1 -4.1800 -8.2681 -0.9452 36 1 0.8091 -4.2371 0.8015 37 1 3.0249 -2.3394 1.9531 38 1 2.4198 -3.8980 2.7319 39 1 3.1510 -5.2045 0.6844 40 1 3.7557 -3.6461 -0.0945 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930615601.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:59 Heat of formation + Delta-G solvation = -48.769719 kcal Electronic energy + Delta-G solvation = -26878.494827 eV Core-core repulsion = 23045.512766 eV Total energy + Delta-G solvation = -3832.982061 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.15151 -40.72485 -39.62456 -38.36105 -37.71695 -36.04683 -34.80508 -33.08844 -32.31073 -31.75863 -29.93630 -27.22079 -25.90382 -24.61194 -23.68609 -23.07768 -22.53009 -21.85428 -21.17015 -19.02805 -18.92768 -18.28321 -17.87124 -17.55795 -17.22302 -16.77908 -16.54051 -16.19470 -15.73163 -15.49902 -15.32765 -15.15416 -14.89511 -14.66543 -14.52809 -14.11319 -13.71772 -13.52741 -13.19864 -13.01369 -12.90381 -12.80919 -12.62788 -12.32300 -12.19967 -12.04550 -11.64262 -11.55471 -11.23418 -11.08289 -10.80315 -10.24786 -10.15001 -10.08749 -9.62439 -9.04118 -8.18657 -6.07374 -0.34831 0.03532 1.35073 1.40521 1.42229 1.50676 1.98565 2.13081 2.30684 2.52777 2.72743 3.02700 3.11720 3.35653 3.40281 3.74212 3.86510 3.90128 3.97827 4.09468 4.15925 4.26775 4.31173 4.36782 4.49308 4.54365 4.68240 4.77744 4.82675 4.94072 4.94698 5.09746 5.11540 5.31002 5.35178 5.44862 5.49750 5.53045 5.78559 5.88485 6.15850 6.39494 6.96978 6.98926 7.15603 7.59718 8.28176 8.84926 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.017488 B = 0.004481 C = 0.003852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.737498 B = 6246.539398 C = 7268.065759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.006 3.994 3 Si 0.974 3.026 4 H -0.251 1.251 5 H -0.297 1.297 6 H -0.274 1.274 7 C -0.342 4.342 8 H 0.088 0.912 9 N -0.431 5.431 10 C 0.503 3.497 11 O -0.585 6.585 12 C -0.128 4.128 13 C -0.051 4.051 14 C -0.121 4.121 15 C 0.147 3.853 16 C -0.183 4.183 17 C -0.030 4.030 18 C 0.568 3.432 19 O -0.580 6.580 20 N -0.707 5.707 21 C 0.063 3.937 22 C 0.038 3.962 23 O -0.333 6.333 24 C 0.033 3.967 25 C -0.172 4.172 26 C -0.176 4.176 27 H 0.257 0.743 28 H 0.162 0.838 29 H 0.186 0.814 30 H 0.093 0.907 31 H 0.416 0.584 32 H 0.069 0.931 33 H 0.150 0.850 34 H 0.102 0.898 35 H 0.132 0.868 36 H 0.129 0.871 37 H 0.080 0.920 38 H 0.121 0.879 39 H 0.136 0.864 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.667 -21.709 7.205 23.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.200 4.200 3 Si 0.799 3.201 4 H -0.174 1.174 5 H -0.224 1.224 6 H -0.199 1.199 7 C -0.469 4.469 8 H 0.106 0.894 9 N -0.149 5.149 10 C 0.292 3.708 11 O -0.467 6.467 12 C -0.132 4.132 13 C -0.069 4.069 14 C -0.138 4.138 15 C 0.102 3.898 16 C -0.187 4.187 17 C -0.050 4.050 18 C 0.356 3.644 19 O -0.460 6.460 20 N -0.360 5.360 21 C -0.061 4.061 22 C -0.036 4.036 23 O -0.250 6.250 24 C -0.071 4.071 25 C -0.210 4.210 26 C -0.214 4.214 27 H 0.067 0.933 28 H 0.180 0.820 29 H 0.204 0.796 30 H 0.112 0.888 31 H 0.255 0.745 32 H 0.087 0.913 33 H 0.168 0.832 34 H 0.120 0.880 35 H 0.150 0.850 36 H 0.147 0.853 37 H 0.099 0.901 38 H 0.139 0.861 39 H 0.154 0.846 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -3.956 -20.875 6.385 22.185 hybrid contribution -0.489 2.053 -0.335 2.137 sum -4.445 -18.822 6.050 20.264 Atomic orbital electron populations 1.69973 1.08080 1.27743 1.45042 1.26221 0.95665 1.03033 0.95052 0.85185 0.79418 0.78491 0.77027 1.17390 1.22355 1.19944 1.19270 0.91962 0.83788 1.51913 0.89443 1.42836 1.35438 1.09883 1.26792 1.18374 0.83710 0.86729 0.81949 1.90582 1.69294 1.41213 1.45650 1.20238 0.93643 0.95236 1.04047 1.21830 1.01679 0.89428 0.93974 1.21367 0.91810 1.00147 1.00510 1.18859 0.91347 0.83807 0.95796 1.20154 0.94184 0.94393 1.09975 1.20762 0.93075 0.96729 0.94442 1.18588 0.86701 0.78489 0.80645 1.90800 1.78899 1.42195 1.34062 1.45793 1.11678 1.46824 1.31746 1.22412 1.02102 0.93459 0.88129 1.23574 0.92505 0.97285 0.90234 1.85817 1.56128 1.38565 1.44497 1.22267 0.94113 0.92238 0.98480 1.23198 1.02786 1.01809 0.93194 1.23437 0.96571 1.00955 1.00463 0.93326 0.82034 0.79633 0.88840 0.74521 0.91261 0.83200 0.87983 0.84995 0.85338 0.90115 0.86136 0.84613 0.90490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -54.88 11.24 21.68 0.24 -54.63 16 2 C 0.01 0.33 4.67 84.95 0.40 0.72 16 3 Si 0.97 45.96 29.57 68.60 2.03 47.99 16 4 H -0.25 -10.84 7.11 99.48 0.71 -10.13 16 5 H -0.30 -14.66 7.11 99.48 0.71 -13.95 16 6 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 7 C -0.34 -18.73 7.85 84.09 0.66 -18.07 16 8 H 0.09 4.54 7.32 -2.92 -0.02 4.52 16 9 N -0.43 -21.59 2.85 -616.71 -1.76 -23.35 16 10 C 0.50 27.34 6.44 86.70 0.56 27.90 16 11 O -0.59 -38.38 14.63 -4.05 -0.06 -38.44 16 12 C -0.13 -5.50 5.27 -20.09 -0.11 -5.61 16 13 C -0.05 -1.53 7.45 22.57 0.17 -1.36 16 14 C -0.12 -2.78 9.98 22.26 0.22 -2.56 16 15 C 0.15 3.92 5.55 22.98 0.13 4.05 16 16 C -0.18 -6.44 4.82 -20.05 -0.10 -6.54 16 17 C -0.03 -1.31 9.37 22.74 0.21 -1.10 16 18 C 0.57 19.71 7.25 86.60 0.63 20.34 16 19 O -0.58 -25.66 17.92 -3.98 -0.07 -25.73 16 20 N -0.71 -15.31 5.43 -466.68 -2.54 -17.85 16 21 C 0.06 0.79 6.28 86.16 0.54 1.34 16 22 C 0.04 0.41 6.96 71.74 0.50 0.91 16 23 O -0.33 -7.03 9.89 -88.39 -0.87 -7.90 16 24 C 0.03 1.21 4.38 44.99 0.20 1.40 16 25 C -0.17 -5.35 9.80 30.59 0.30 -5.05 16 26 C -0.18 -4.84 9.53 30.59 0.29 -4.54 16 27 H 0.26 15.78 8.32 -92.70 -0.77 15.00 16 28 H 0.16 4.28 5.53 -2.91 -0.02 4.27 16 29 H 0.19 2.54 8.06 -2.91 -0.02 2.52 16 30 H 0.09 4.87 8.06 -2.91 -0.02 4.85 16 31 H 0.42 7.14 8.95 -92.71 -0.83 6.31 16 32 H 0.07 1.13 7.45 -2.39 -0.02 1.12 16 33 H 0.15 0.52 8.14 -2.39 -0.02 0.50 16 34 H 0.10 0.56 8.14 -2.38 -0.02 0.55 16 35 H 0.13 0.74 8.14 -2.38 -0.02 0.72 16 36 H 0.13 4.07 5.88 -2.39 -0.01 4.05 16 37 H 0.08 2.97 6.79 -2.38 -0.02 2.95 16 38 H 0.12 2.87 8.14 -2.39 -0.02 2.85 16 39 H 0.14 2.46 8.14 -2.39 -0.02 2.44 16 40 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 Total: -1.00 -90.58 333.65 1.84 -88.74 By element: Atomic # 1 Polarization: 19.08 SS G_CDS: 0.27 Total: 19.35 kcal Atomic # 6 Polarization: 7.23 SS G_CDS: 4.60 Total: 11.83 kcal Atomic # 7 Polarization: -91.78 SS G_CDS: -4.05 Total: -95.83 kcal Atomic # 8 Polarization: -71.07 SS G_CDS: -1.00 Total: -72.07 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 2.03 Total: 47.99 kcal Total: -90.58 1.84 -88.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930615601.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.970 kcal (2) G-P(sol) polarization free energy of solvation -90.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds