Wall clock time and date at job start Tue Mar 31 2020 11:44:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42896 * 109.47316 * 2 1 4 4 C 1.35702 * 116.99982 * 180.02562 * 3 2 1 5 5 C 1.39007 * 119.90613 * 180.02562 * 4 3 2 6 6 C 1.37683 * 120.09234 * 180.02562 * 5 4 3 7 7 C 1.39789 * 119.90467 * 359.97356 * 6 5 4 8 8 C 1.47471 * 120.09058 * 179.97438 * 7 6 5 9 9 O 1.21499 * 120.00096 * 359.97438 * 8 7 6 10 10 O 1.34744 * 119.99912 * 180.02562 * 8 7 6 11 11 C 1.45200 * 116.99916 * 179.97438 * 10 8 7 12 12 H 1.08996 * 109.47354 * 29.99865 * 11 10 8 13 13 C 1.50696 * 109.47133 * 269.99500 * 11 10 8 14 14 H 1.08001 * 120.00101 * 119.99611 * 13 11 10 15 15 C 1.37881 * 120.00322 * 300.00356 * 13 11 10 16 16 N 1.31515 * 119.99725 * 359.97438 * 15 13 11 17 17 Si 1.86800 * 120.00457 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.47311 * 89.99601 * 17 15 13 19 19 H 1.48496 * 109.46979 * 210.00276 * 17 15 13 20 20 H 1.48502 * 109.46932 * 329.99500 * 17 15 13 21 21 C 1.50706 * 109.46969 * 149.99885 * 11 10 8 22 22 C 1.34519 * 125.78445 * 219.99765 * 21 11 10 23 23 C 1.41382 * 106.83677 * 179.97438 * 22 21 11 24 24 C 1.34517 * 106.84094 * 0.02562 * 23 22 21 25 25 O 1.34295 * 125.79239 * 39.69049 * 21 11 10 26 26 C 1.39788 * 119.81683 * 0.25780 * 7 6 5 27 27 C 1.37680 * 119.90498 * 359.50992 * 26 7 6 28 28 H 1.09000 * 109.47451 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47352 * 300.00595 * 1 2 3 30 30 H 1.09003 * 109.46707 * 59.99836 * 1 2 3 31 31 H 1.08996 * 109.47104 * 239.99893 * 2 1 3 32 32 H 1.09003 * 109.46707 * 120.00164 * 2 1 3 33 33 H 1.08003 * 119.95503 * 0.02562 * 5 4 3 34 34 H 1.08002 * 120.04776 * 179.97438 * 6 5 4 35 35 H 0.96999 * 120.00080 * 180.02562 * 16 15 13 36 36 H 1.07995 * 126.57960 * 0.03657 * 22 21 11 37 37 H 1.08000 * 126.57979 * 179.97438 * 23 22 21 38 38 H 1.08008 * 125.78731 * 180.02562 * 24 23 22 39 39 H 1.08005 * 120.05125 * 179.72848 * 26 7 6 40 40 H 1.08000 * 119.95522 * 180.21726 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3517 1.5250 -0.0005 5 6 3.8810 2.8103 0.0000 6 6 5.2453 2.9951 -0.0011 7 6 6.0986 1.8879 -0.0022 8 6 7.5606 2.0810 -0.0039 9 8 8.0250 3.2038 -0.0049 10 8 8.3813 1.0124 -0.0054 11 6 9.8089 1.2777 -0.0076 12 1 10.0044 2.2189 0.5060 13 6 10.3005 1.3696 -1.4292 14 1 10.7624 2.2795 -1.7831 15 6 10.1606 0.2922 -2.2782 16 7 9.5985 -0.8159 -1.8471 17 14 10.7706 0.4059 -4.0401 18 1 12.1844 -0.0437 -4.1044 19 1 9.9354 -0.4606 -4.9099 20 1 10.6768 1.8126 -4.5066 21 6 10.5287 0.1595 0.7014 22 6 11.5719 0.3019 1.5387 23 6 11.9294 -0.9956 1.9718 24 6 11.0837 -1.8532 1.3729 25 8 10.2339 -1.1474 0.6091 26 6 5.5622 0.5970 -0.0076 27 6 4.1967 0.4211 -0.0016 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 3.2210 3.6653 0.0012 34 1 5.6558 3.9941 -0.0011 35 1 9.5004 -1.5740 -2.4443 36 1 12.0448 1.2294 1.8258 37 1 12.7287 -1.2496 2.6523 38 1 11.0845 -2.9269 1.4904 39 1 6.2179 -0.2612 -0.0128 40 1 3.7814 -0.5759 -0.0022 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123369449.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:26 Heat of formation + Delta-G solvation = -78.183913 kcal Electronic energy + Delta-G solvation = -25783.976793 eV Core-core repulsion = 21917.426486 eV Total energy + Delta-G solvation = -3866.550307 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.119 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.30863 -40.21017 -39.07207 -37.16749 -35.31265 -32.94811 -32.17864 -31.83418 -30.85835 -30.13553 -29.37098 -26.52729 -24.45932 -23.60733 -22.77721 -21.75464 -20.67230 -19.95486 -19.43810 -18.32476 -17.26578 -16.59766 -16.58735 -16.26591 -15.76376 -15.24060 -14.92183 -14.53985 -14.42040 -14.36965 -13.70110 -13.54130 -13.46151 -13.27474 -12.87909 -12.71209 -12.24997 -11.96570 -11.86549 -11.80889 -11.75130 -11.52560 -11.31635 -11.08845 -10.99058 -10.78790 -10.69427 -10.36536 -9.82676 -9.55319 -9.05236 -8.92903 -8.83274 -8.75113 -8.13496 -7.35506 -6.22634 -4.43678 1.14021 1.50578 2.90322 3.05429 3.20034 3.26874 3.28044 3.32303 3.55880 3.92092 4.18704 4.27031 4.28772 4.69255 4.69978 4.89518 5.01151 5.03397 5.09402 5.24161 5.43924 5.51156 5.52885 5.59088 5.75613 5.77726 5.88523 5.96408 6.13739 6.21062 6.37014 6.46922 6.51609 6.69621 6.77705 6.80626 6.91650 7.20917 7.35336 7.47709 7.62891 7.75598 7.82144 8.41931 8.59235 8.97842 9.29924 10.76583 Molecular weight = 316.12amu Principal moments of inertia in cm(-1) A = 0.013837 B = 0.003650 C = 0.003447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2023.132348 B = 7670.434705 C = 8120.906602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.051 3.949 3 O -0.316 6.316 4 C 0.149 3.851 5 C -0.169 4.169 6 C -0.023 4.023 7 C -0.148 4.148 8 C 0.505 3.495 9 O -0.530 6.530 10 O -0.330 6.330 11 C 0.279 3.721 12 H 0.072 0.928 13 C -0.548 4.548 14 H 0.074 0.926 15 C 0.081 3.919 16 N -0.825 5.825 17 Si 0.897 3.103 18 H -0.276 1.276 19 H -0.282 1.282 20 H -0.269 1.269 21 C 0.081 3.919 22 C -0.265 4.265 23 C -0.222 4.222 24 C -0.083 4.083 25 O -0.112 6.112 26 C -0.016 4.016 27 C -0.225 4.225 28 H 0.077 0.923 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.134 0.866 34 H 0.142 0.858 35 H 0.267 0.733 36 H 0.133 0.867 37 H 0.130 0.870 38 H 0.182 0.818 39 H 0.147 0.853 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.777 -1.786 4.788 13.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.024 4.024 3 O -0.229 6.229 4 C 0.104 3.896 5 C -0.188 4.188 6 C -0.041 4.041 7 C -0.150 4.150 8 C 0.350 3.650 9 O -0.423 6.423 10 O -0.245 6.245 11 C 0.227 3.773 12 H 0.090 0.910 13 C -0.584 4.584 14 H 0.092 0.908 15 C -0.130 4.130 16 N -0.458 5.458 17 Si 0.723 3.277 18 H -0.202 1.202 19 H -0.208 1.208 20 H -0.194 1.194 21 C 0.027 3.973 22 C -0.285 4.285 23 C -0.241 4.241 24 C -0.152 4.152 25 O -0.003 6.003 26 C -0.034 4.034 27 C -0.244 4.244 28 H 0.096 0.904 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.152 0.848 34 H 0.160 0.840 35 H 0.077 0.923 36 H 0.151 0.849 37 H 0.148 0.852 38 H 0.199 0.801 39 H 0.165 0.835 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -13.059 -1.692 4.572 13.939 hybrid contribution 0.897 -0.369 -0.929 1.343 sum -12.162 -2.062 3.644 12.862 Atomic orbital electron populations 1.21775 0.92811 1.02821 1.03446 1.22821 0.95755 0.81983 1.01804 1.86002 1.19289 1.29460 1.88195 1.19255 0.82016 0.94299 0.94057 1.20273 0.94762 0.94718 1.09038 1.21085 0.91463 0.99075 0.92489 1.19411 0.91340 0.94204 1.10038 1.20766 0.87438 0.83772 0.72991 1.90710 1.77982 1.25693 1.47868 1.86778 1.21456 1.35268 1.81037 1.18785 0.74247 0.88569 0.95696 0.91033 1.21267 1.41950 1.00800 0.94340 0.90763 1.25147 0.93694 0.94894 0.99248 1.70033 1.37685 1.02580 1.35540 0.86509 0.78903 0.78626 0.83672 1.20196 1.20767 1.19356 1.22793 0.97248 0.82834 0.94440 1.21195 1.03263 0.98144 1.05877 1.21497 1.03453 0.93201 1.05996 1.23808 0.95524 0.97544 0.98319 1.84459 1.46521 1.17269 1.52100 1.21438 0.94308 0.97418 0.90259 1.21208 0.94163 0.98039 1.10972 0.90386 0.91564 0.91552 0.91745 0.91781 0.84781 0.84001 0.92316 0.84946 0.85185 0.80061 0.83530 0.85120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 10.28 37.16 0.38 -0.65 16 2 C 0.05 0.46 5.45 37.16 0.20 0.67 16 3 O -0.32 -3.89 10.12 -18.81 -0.19 -4.08 16 4 C 0.15 2.08 6.70 -39.01 -0.26 1.81 16 5 C -0.17 -2.37 9.97 -39.50 -0.39 -2.76 16 6 C -0.02 -0.37 9.58 -39.20 -0.38 -0.75 16 7 C -0.15 -2.81 5.87 -104.98 -0.62 -3.43 16 8 C 0.51 11.67 7.86 34.49 0.27 11.94 16 9 O -0.53 -13.07 15.60 -19.26 -0.30 -13.37 16 10 O -0.33 -8.33 8.51 -42.70 -0.36 -8.69 16 11 C 0.28 7.24 2.59 -29.03 -0.08 7.17 16 12 H 0.07 1.83 7.15 -51.93 -0.37 1.45 16 13 C -0.55 -15.08 8.91 -34.44 -0.31 -15.39 16 14 H 0.07 2.04 7.81 -52.49 -0.41 1.63 16 15 C 0.08 2.17 5.24 -17.82 -0.09 2.08 16 16 N -0.83 -22.40 10.46 55.43 0.58 -21.82 16 17 Si 0.90 20.85 29.54 -169.99 -5.02 15.83 16 18 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 19 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 20 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 21 C 0.08 2.00 5.67 -35.62 -0.20 1.80 16 22 C -0.27 -5.87 10.80 -39.70 -0.43 -6.30 16 23 C -0.22 -4.38 10.91 -39.70 -0.43 -4.82 16 24 C -0.08 -1.67 12.09 29.42 0.36 -1.32 16 25 O -0.11 -2.76 8.64 4.37 0.04 -2.72 16 26 C -0.02 -0.27 9.61 -39.21 -0.38 -0.65 16 27 C -0.23 -3.19 9.01 -39.50 -0.36 -3.54 16 28 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.55 7.65 -51.93 -0.40 0.15 16 32 H 0.06 0.53 7.65 -51.93 -0.40 0.13 16 33 H 0.13 1.55 8.06 -52.48 -0.42 1.13 16 34 H 0.14 2.18 7.64 -52.49 -0.40 1.78 16 35 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 36 H 0.13 2.65 8.06 -52.49 -0.42 2.23 16 37 H 0.13 2.12 8.06 -52.49 -0.42 1.69 16 38 H 0.18 2.88 8.06 -52.48 -0.42 2.45 16 39 H 0.15 2.64 7.60 -52.48 -0.40 2.24 16 40 H 0.13 1.51 6.28 -52.49 -0.33 1.18 16 LS Contribution 351.49 15.07 5.30 5.30 Total: -1.00 -31.44 351.49 -7.47 -38.91 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: -4.80 Total: 4.77 kcal Atomic # 6 Polarization: -11.42 SS G_CDS: -2.71 Total: -14.13 kcal Atomic # 7 Polarization: -22.40 SS G_CDS: 0.58 Total: -21.82 kcal Atomic # 8 Polarization: -28.04 SS G_CDS: -0.82 Total: -28.86 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.44 -7.47 -38.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123369449.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.274 kcal (2) G-P(sol) polarization free energy of solvation -31.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds