Wall clock time and date at job start Tue Mar 31 2020 11:06:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35702 * 116.99793 * 2 1 4 4 C 1.39030 * 119.90850 * 359.97438 * 3 2 1 5 5 C 1.37656 * 120.09256 * 179.97438 * 4 3 2 6 6 C 1.39817 * 119.90677 * 0.02859 * 5 4 3 7 7 C 1.47469 * 120.09278 * 179.97438 * 6 5 4 8 8 O 1.21499 * 119.99638 * 173.75431 * 7 6 5 9 9 O 1.34750 * 120.00045 * 353.76151 * 7 6 5 10 10 C 1.45192 * 116.99947 * 179.97438 * 9 7 6 11 11 H 1.09005 * 109.47343 * 329.99561 * 10 9 7 12 12 C 1.50703 * 109.47193 * 89.99482 * 10 9 7 13 13 H 1.07994 * 120.00219 * 239.99802 * 12 10 9 14 14 C 1.37880 * 119.99765 * 60.00290 * 12 10 9 15 15 N 1.31516 * 119.99962 * 359.97438 * 14 12 10 16 16 Si 1.86798 * 120.00041 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.47290 * 89.99557 * 16 14 12 18 18 H 1.48492 * 109.47159 * 210.00064 * 16 14 12 19 19 H 1.48509 * 109.47152 * 329.99906 * 16 14 12 20 20 C 1.50697 * 109.47341 * 209.99939 * 10 9 7 21 21 C 1.34509 * 125.79490 * 145.00029 * 20 10 9 22 22 C 1.41378 * 106.84555 * 180.02562 * 21 20 10 23 23 C 1.34515 * 106.83874 * 359.97438 * 22 21 20 24 24 O 1.34301 * 108.42192 * 359.73688 * 23 22 21 25 25 C 1.39771 * 119.81507 * 359.97438 * 6 5 4 26 26 C 1.50697 * 120.04923 * 180.02562 * 25 6 5 27 27 C 1.37710 * 119.90273 * 359.72385 * 25 6 5 28 28 H 1.08994 * 109.47519 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47041 * 300.00127 * 1 2 3 30 30 H 1.09003 * 109.47231 * 59.99735 * 1 2 3 31 31 H 1.07999 * 119.95307 * 359.97438 * 4 3 2 32 32 H 1.07998 * 120.04735 * 180.02562 * 5 4 3 33 33 H 0.96992 * 119.99787 * 180.02562 * 15 14 12 34 34 H 1.08007 * 126.57872 * 0.03099 * 21 20 10 35 35 H 1.07996 * 126.58407 * 179.97438 * 22 21 20 36 36 H 1.07997 * 125.79021 * 180.02562 * 23 22 21 37 37 H 1.08997 * 109.47108 * 83.39886 * 26 25 6 38 38 H 1.09000 * 109.47215 * 203.40201 * 26 25 6 39 39 H 1.09004 * 109.47166 * 323.39782 * 26 25 6 40 40 H 1.08007 * 119.95069 * 180.29745 * 27 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2091 0.0000 4 6 1.2859 2.3739 -0.0005 5 6 1.9069 3.6025 0.0000 6 6 3.3030 3.6779 0.0005 7 6 3.9725 4.9919 0.0005 8 8 5.1802 5.0582 0.1154 9 8 3.2448 6.1188 -0.1268 10 6 3.9703 7.3764 -0.1179 11 1 4.8678 7.2739 0.4922 12 6 4.3601 7.7415 -1.5272 13 1 5.4019 7.8591 -1.7861 14 6 3.3864 7.9254 -2.4860 15 7 2.1177 7.7818 -2.1708 16 14 3.8694 8.3786 -4.2326 17 1 4.0686 7.1407 -5.0282 18 1 2.7922 9.1947 -4.8481 19 1 5.1315 9.1609 -4.2101 20 6 3.0931 8.4585 0.4570 21 6 3.5091 9.4886 1.2152 22 6 2.3628 10.2526 1.5331 23 6 1.3148 9.6439 0.9496 24 8 1.7638 8.5612 0.2941 25 6 4.0624 2.5045 0.0009 26 6 5.5675 2.5796 0.0020 27 6 3.4331 1.2795 0.0067 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 0.2075 2.3147 -0.0014 32 1 1.3165 4.5068 0.0000 33 1 1.4328 7.9108 -2.8454 34 1 4.5243 9.6931 1.5222 35 1 2.3341 11.1523 2.1298 36 1 0.2872 9.9729 0.9961 37 1 5.9237 2.7157 1.0231 38 1 5.9777 1.6558 -0.4059 39 1 5.8897 3.4218 -0.6104 40 1 4.0192 0.3723 0.0119 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123464156.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:40 Heat of formation + Delta-G solvation = -73.928755 kcal Electronic energy + Delta-G solvation = -26299.429553 eV Core-core repulsion = 22433.063764 eV Total energy + Delta-G solvation = -3866.365790 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.119 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.31428 -40.26809 -39.10556 -37.24915 -35.36321 -33.00582 -32.19048 -31.83631 -30.68901 -29.72712 -27.81520 -26.54519 -26.41143 -23.74250 -22.82253 -21.44057 -20.65188 -19.91292 -19.44388 -17.70383 -17.26352 -16.67289 -16.59706 -16.02477 -15.83687 -15.27290 -14.94554 -14.60397 -14.43078 -14.22138 -13.84227 -13.45067 -13.21739 -13.10734 -12.70230 -12.38591 -12.11485 -11.93476 -11.87758 -11.77860 -11.72862 -11.53756 -11.31863 -11.05765 -10.99621 -10.84579 -10.69538 -10.35614 -9.82666 -9.23681 -9.06418 -8.82859 -8.75323 -8.65971 -8.10978 -7.34229 -6.22516 -4.43922 1.16238 1.51133 2.90932 3.17215 3.20549 3.27186 3.28234 3.31859 3.57933 3.89939 4.16702 4.26629 4.27142 4.82239 4.92933 5.02432 5.06804 5.09909 5.25932 5.35010 5.45768 5.50410 5.65290 5.85593 5.95119 6.01262 6.06299 6.14034 6.25402 6.35938 6.46347 6.52346 6.54592 6.79286 6.80589 6.82374 6.94982 7.20793 7.35862 7.48709 7.62820 7.78372 7.81955 8.40881 8.59385 8.99058 9.30069 10.76729 Molecular weight = 316.12amu Principal moments of inertia in cm(-1) A = 0.013041 B = 0.004245 C = 0.003989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2146.589059 B = 6593.927717 C = 7018.323191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.317 6.317 3 C 0.151 3.849 4 C -0.232 4.232 5 C -0.012 4.012 6 C -0.153 4.153 7 C 0.505 3.495 8 O -0.524 6.524 9 O -0.330 6.330 10 C 0.280 3.720 11 H 0.072 0.928 12 C -0.548 4.548 13 H 0.074 0.926 14 C 0.081 3.919 15 N -0.827 5.827 16 Si 0.896 3.104 17 H -0.276 1.276 18 H -0.283 1.283 19 H -0.269 1.269 20 C 0.082 3.918 21 C -0.264 4.264 22 C -0.221 4.221 23 C -0.083 4.083 24 O -0.117 6.117 25 C 0.014 3.986 26 C -0.122 4.122 27 C -0.173 4.173 28 H 0.098 0.902 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.131 0.869 32 H 0.146 0.854 33 H 0.267 0.733 34 H 0.133 0.867 35 H 0.130 0.870 36 H 0.182 0.818 37 H 0.077 0.923 38 H 0.056 0.944 39 H 0.102 0.898 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.319 -9.892 4.997 11.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.230 6.230 3 C 0.105 3.895 4 C -0.250 4.250 5 C -0.031 4.031 6 C -0.154 4.154 7 C 0.351 3.649 8 O -0.417 6.417 9 O -0.245 6.245 10 C 0.228 3.772 11 H 0.090 0.910 12 C -0.584 4.584 13 H 0.092 0.908 14 C -0.129 4.129 15 N -0.460 5.460 16 Si 0.723 3.277 17 H -0.202 1.202 18 H -0.208 1.208 19 H -0.194 1.194 20 C 0.029 3.971 21 C -0.284 4.284 22 C -0.240 4.240 23 C -0.152 4.152 24 O -0.009 6.009 25 C 0.013 3.987 26 C -0.178 4.178 27 C -0.192 4.192 28 H 0.116 0.884 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.149 0.851 32 H 0.163 0.837 33 H 0.077 0.923 34 H 0.151 0.849 35 H 0.148 0.852 36 H 0.199 0.801 37 H 0.095 0.905 38 H 0.075 0.925 39 H 0.120 0.880 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -4.303 -10.198 4.800 12.064 hybrid contribution -0.160 0.851 -0.965 1.296 sum -4.463 -9.347 3.835 11.046 Atomic orbital electron populations 1.23076 0.78330 1.03760 1.01733 1.86001 1.21507 1.27235 1.88298 1.19249 0.92291 0.84001 0.93918 1.21164 1.00121 0.92022 1.11722 1.21383 0.93614 0.97921 0.90145 1.19250 0.93618 0.91360 1.11211 1.20726 0.85559 0.85518 0.73077 1.90656 1.15334 1.87948 1.47803 1.86780 1.42447 1.14909 1.80411 1.18790 0.86540 0.75229 0.96674 0.91036 1.21252 0.94067 1.50462 0.92571 0.90752 1.25145 0.94886 0.93371 0.99518 1.70039 0.99323 1.42614 1.33986 0.86514 0.78677 0.78758 0.83775 1.20170 1.20831 1.19376 1.22821 0.81238 0.98662 0.94417 1.21160 0.99418 0.99474 1.08309 1.21492 0.92975 1.02672 1.06881 1.23777 0.99216 0.91575 1.00607 1.84411 1.22392 1.38593 1.55485 1.19817 0.96799 0.90494 0.91563 1.21136 0.89480 1.03310 1.03865 1.20132 0.91036 0.97829 1.10192 0.88370 0.92449 0.92397 0.85116 0.83654 0.92328 0.84933 0.85186 0.80070 0.90478 0.92522 0.87967 0.84849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.21 16 2 O -0.32 -3.95 10.48 -18.81 -0.20 -4.15 16 3 C 0.15 2.15 6.70 -39.01 -0.26 1.89 16 4 C -0.23 -3.33 9.01 -39.50 -0.36 -3.69 16 5 C -0.01 -0.21 9.61 -39.20 -0.38 -0.59 16 6 C -0.15 -2.93 5.87 -104.97 -0.62 -3.55 16 7 C 0.51 11.49 7.79 34.49 0.27 11.76 16 8 O -0.52 -12.32 12.59 -19.26 -0.24 -12.56 16 9 O -0.33 -8.27 8.51 -43.39 -0.37 -8.64 16 10 C 0.28 7.18 2.58 -29.03 -0.07 7.11 16 11 H 0.07 1.80 7.16 -51.93 -0.37 1.43 16 12 C -0.55 -14.94 8.91 -34.44 -0.31 -15.24 16 13 H 0.07 2.02 7.81 -52.49 -0.41 1.61 16 14 C 0.08 2.18 5.24 -17.82 -0.09 2.09 16 15 N -0.83 -22.51 10.62 55.43 0.59 -21.92 16 16 Si 0.90 20.82 29.54 -169.99 -5.02 15.80 16 17 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 18 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 19 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 20 C 0.08 2.03 5.59 -35.63 -0.20 1.83 16 21 C -0.26 -5.83 10.81 -39.71 -0.43 -6.26 16 22 C -0.22 -4.34 10.91 -39.70 -0.43 -4.78 16 23 C -0.08 -1.66 12.09 29.42 0.36 -1.31 16 24 O -0.12 -2.86 8.87 2.19 0.02 -2.85 16 25 C 0.01 0.23 5.91 -104.24 -0.62 -0.39 16 26 C -0.12 -1.89 8.72 36.00 0.31 -1.57 16 27 C -0.17 -2.54 9.60 -39.50 -0.38 -2.92 16 28 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.43 7.65 -51.93 -0.40 0.04 16 30 H 0.06 0.46 7.65 -51.93 -0.40 0.06 16 31 H 0.13 1.52 6.28 -52.49 -0.33 1.19 16 32 H 0.15 2.61 7.62 -52.49 -0.40 2.21 16 33 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 34 H 0.13 2.66 8.06 -52.48 -0.42 2.23 16 35 H 0.13 2.11 8.06 -52.49 -0.42 1.69 16 36 H 0.18 2.86 8.06 -52.49 -0.42 2.44 16 37 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 38 H 0.06 0.71 8.04 -51.93 -0.42 0.29 16 39 H 0.10 1.86 5.85 -51.93 -0.30 1.55 16 40 H 0.13 1.65 8.06 -52.48 -0.42 1.23 16 LS Contribution 345.96 15.07 5.21 5.21 Total: -1.00 -30.99 345.96 -6.92 -37.91 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -4.70 Total: 5.59 kcal Atomic # 6 Polarization: -12.19 SS G_CDS: -2.21 Total: -14.40 kcal Atomic # 7 Polarization: -22.51 SS G_CDS: 0.59 Total: -21.92 kcal Atomic # 8 Polarization: -27.40 SS G_CDS: -0.79 Total: -28.19 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.99 -6.92 -37.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123464156.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.019 kcal (2) G-P(sol) polarization free energy of solvation -30.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds