Wall clock time and date at job start Tue Mar 31 2020 10:42:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.43200 * 120.00227 * 351.46046 * 3 2 1 5 5 N 3.51038 * 140.68583 * 351.46093 * 2 1 3 6 6 C 1.41140 * 120.00003 * 171.46437 * 3 2 1 7 7 C 1.38973 * 120.00326 * 185.31986 * 6 3 2 8 8 H 1.08000 * 119.99509 * 339.11515 * 7 6 3 9 9 C 1.40845 * 120.00238 * 159.40212 * 7 6 3 10 10 N 1.30334 * 120.00018 * 1.54683 * 9 7 6 11 11 Si 1.86795 * 120.00014 * 181.55547 * 9 7 6 12 12 H 1.48500 * 109.47190 * 89.99638 * 11 9 7 13 13 H 1.48507 * 109.47172 * 209.99316 * 11 9 7 14 14 H 1.48502 * 109.47196 * 329.99469 * 11 9 7 15 15 N 1.38387 * 119.99970 * 5.31163 * 6 3 2 16 16 C 1.39185 * 119.99631 * 117.01453 * 15 6 3 17 17 C 1.38901 * 119.65277 * 353.24888 * 16 15 6 18 18 C 1.39454 * 118.95875 * 179.73501 * 17 16 15 19 19 C 1.48388 * 120.86802 * 180.27494 * 18 17 16 20 20 C 1.39346 * 120.11970 * 4.48558 * 19 18 17 21 21 C 1.38012 * 119.87614 * 179.71956 * 20 19 18 22 22 C 1.38325 * 120.12268 * 0.55534 * 21 20 19 23 23 C 1.38328 * 120.24512 * 359.72175 * 22 21 20 24 24 C 1.38018 * 120.11910 * 359.97438 * 23 22 21 25 25 C 1.39959 * 118.26752 * 0.51925 * 18 17 16 26 26 C 1.37833 * 119.18517 * 359.73535 * 25 18 17 27 27 N 1.31989 * 120.97848 * 359.97438 * 26 25 18 28 28 H 0.96999 * 120.00359 * 185.02078 * 10 9 7 29 29 H 0.97000 * 120.00145 * 297.02436 * 15 6 3 30 30 H 1.08004 * 120.51704 * 359.97438 * 17 16 15 31 31 H 1.08002 * 120.06006 * 359.97438 * 20 19 18 32 32 H 1.07999 * 119.94317 * 180.29721 * 21 20 19 33 33 H 1.07997 * 119.88349 * 179.74490 * 22 21 20 34 34 H 1.07998 * 119.94568 * 179.97438 * 23 22 21 35 35 H 1.08000 * 120.06067 * 180.02562 * 24 23 22 36 36 H 1.07999 * 120.40677 * 179.71785 * 25 18 17 37 37 H 1.07998 * 119.51023 * 180.02562 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2846 -1.2254 0.1841 5 7 3.8519 -2.1994 0.3302 6 6 3.2731 1.2097 -0.1814 7 6 4.6584 1.1964 -0.2922 8 1 5.2221 0.3560 0.0849 9 6 5.3275 2.2817 -0.8907 10 7 4.6502 3.3118 -1.3135 11 14 7.1856 2.2444 -1.0788 12 1 7.5389 1.6284 -2.3830 13 1 7.7164 3.6304 -1.0261 14 1 7.7788 1.4450 0.0231 15 7 2.5851 2.4085 -0.2492 16 6 2.7982 3.3887 0.7158 17 6 3.5935 3.1056 1.8188 18 6 3.8019 4.1001 2.7740 19 6 4.6487 3.8457 3.9656 20 6 5.3243 2.6341 4.0976 21 6 6.1151 2.4050 5.2053 22 6 6.2288 3.3710 6.1888 23 6 5.5559 4.5733 6.0658 24 6 4.7672 4.8154 4.9593 25 6 3.1873 5.3428 2.5820 26 6 2.4083 5.5415 1.4624 27 7 2.2367 4.5799 0.5748 28 1 5.1010 4.0260 -1.7906 29 1 1.9543 2.5657 -0.9691 30 1 4.0465 2.1319 1.9330 31 1 5.2324 1.8773 3.3326 32 1 6.6430 1.4683 5.3063 33 1 6.8454 3.1860 7.0559 34 1 5.6477 5.3239 6.8368 35 1 4.2426 5.7546 4.8640 36 1 3.3216 6.1361 3.3024 37 1 1.9319 6.4985 1.3088 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001158211435.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:42:13 Heat of formation + Delta-G solvation = 122.924282 kcal Electronic energy + Delta-G solvation = -24631.492502 eV Core-core repulsion = 21145.557323 eV Total energy + Delta-G solvation = -3485.935179 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.102 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.05136 -38.73866 -37.23588 -35.28965 -34.74801 -33.72796 -33.09091 -31.20621 -30.75725 -29.28082 -28.48728 -27.20209 -23.83128 -23.42941 -22.04581 -21.18717 -20.75235 -18.99346 -17.59485 -17.28653 -16.74740 -16.19473 -15.88070 -15.25364 -14.92670 -14.72097 -14.20709 -13.83598 -13.77047 -13.52696 -13.14429 -12.83484 -12.80779 -12.70290 -12.60151 -12.32293 -11.90751 -11.84018 -11.64086 -11.58188 -11.53525 -11.13657 -11.08724 -10.95167 -10.76541 -10.67417 -10.18773 -10.13780 -9.66890 -8.92736 -8.88294 -8.25228 -8.11489 -7.75397 -6.89126 -5.52052 0.90999 1.47354 1.77917 2.15658 2.39883 2.66554 2.73605 2.82381 3.34992 3.74497 3.85980 3.92490 4.02913 4.17836 4.31548 4.63632 4.74137 4.88727 5.00888 5.11918 5.13424 5.23529 5.47463 5.49458 5.55095 5.61063 5.81667 5.85206 5.92682 6.08789 6.15486 6.26058 6.34893 6.37924 6.47399 6.54261 6.63083 6.86790 6.99733 7.03669 7.07922 7.29806 7.61505 7.69442 8.15544 8.31791 8.86033 8.96907 9.08630 9.16713 Molecular weight = 316.10amu Principal moments of inertia in cm(-1) A = 0.009742 B = 0.005302 C = 0.005098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2873.414605 B = 5279.858586 C = 5491.435243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C 0.309 3.691 3 C -0.310 4.310 4 C 0.325 3.675 5 N -0.531 5.531 6 C 0.380 3.620 7 C -0.374 4.374 8 H 0.112 0.888 9 C 0.066 3.934 10 N -0.712 5.712 11 Si 0.925 3.075 12 H -0.257 1.257 13 H -0.267 1.267 14 H -0.248 1.248 15 N -0.639 5.639 16 C 0.457 3.543 17 C -0.207 4.207 18 C 0.021 3.979 19 C -0.040 4.040 20 C -0.101 4.101 21 C -0.120 4.120 22 C -0.122 4.122 23 C -0.125 4.125 24 C -0.107 4.107 25 C -0.241 4.241 26 C 0.143 3.857 27 N -0.541 5.541 28 H 0.302 0.698 29 H 0.405 0.595 30 H 0.141 0.859 31 H 0.133 0.867 32 H 0.123 0.877 33 H 0.119 0.881 34 H 0.120 0.880 35 H 0.125 0.875 36 H 0.122 0.878 37 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.293 10.138 7.791 14.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.213 5.213 2 C 0.002 3.998 3 C -0.328 4.328 4 C 0.017 3.983 5 N -0.214 5.214 6 C 0.275 3.725 7 C -0.402 4.402 8 H 0.129 0.871 9 C -0.165 4.165 10 N -0.330 5.330 11 Si 0.746 3.254 12 H -0.181 1.181 13 H -0.191 1.191 14 H -0.171 1.171 15 N -0.263 5.263 16 C 0.222 3.778 17 C -0.232 4.232 18 C 0.013 3.987 19 C -0.040 4.040 20 C -0.119 4.119 21 C -0.138 4.138 22 C -0.140 4.140 23 C -0.143 4.143 24 C -0.125 4.125 25 C -0.264 4.264 26 C -0.015 4.015 27 N -0.258 5.258 28 H 0.114 0.886 29 H 0.242 0.758 30 H 0.159 0.841 31 H 0.150 0.850 32 H 0.141 0.859 33 H 0.137 0.863 34 H 0.138 0.862 35 H 0.143 0.857 36 H 0.140 0.860 37 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 5.955 8.938 7.233 12.948 hybrid contribution 1.300 0.525 0.085 1.405 sum 7.256 9.463 7.318 13.991 Atomic orbital electron populations 1.81074 1.12377 1.08547 1.19268 1.25150 0.91795 0.92461 0.90438 1.12947 0.82327 0.88033 1.49538 1.24698 0.92036 0.91267 0.90343 1.81097 1.09688 1.11295 1.19282 1.16714 0.89330 0.81308 0.85141 1.20404 0.92123 1.02400 1.25240 0.87061 1.26532 1.03446 0.93129 0.93415 1.69578 1.40268 1.04803 1.18337 0.85928 0.78566 0.79652 0.81271 1.18074 1.19145 1.17061 1.41149 1.44503 1.12752 1.27849 1.17712 0.87979 0.86020 0.86079 1.21622 1.04643 1.01488 0.95412 1.18771 0.94127 0.93380 0.92424 1.18810 0.97063 0.94381 0.93766 1.21449 0.95709 0.96648 0.98063 1.21123 0.99073 0.99409 0.94204 1.21187 0.99818 0.94081 0.98959 1.21038 0.97903 0.97423 0.97969 1.21233 0.98745 0.98920 0.93586 1.21649 1.05258 0.97786 1.01708 1.22089 0.93966 0.96459 0.88968 1.67007 1.27301 1.00215 1.31300 0.88610 0.75787 0.84129 0.84965 0.85863 0.86331 0.86183 0.85736 0.85983 0.83651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.53 -12.55 18.54 41.84 0.78 -11.78 16 2 C 0.31 6.97 14.82 -22.47 -0.33 6.64 16 3 C -0.31 -6.63 5.88 -104.95 -0.62 -7.25 16 4 C 0.32 7.20 13.90 -22.45 -0.31 6.89 16 5 N -0.53 -12.24 18.54 41.86 0.78 -11.46 16 6 C 0.38 7.68 4.88 -83.53 -0.41 7.27 16 7 C -0.37 -7.31 7.07 -38.32 -0.27 -7.58 16 8 H 0.11 2.18 6.99 -52.49 -0.37 1.81 16 9 C 0.07 1.22 5.16 -17.20 -0.09 1.13 16 10 N -0.71 -13.44 10.46 55.60 0.58 -12.86 16 11 Si 0.92 14.61 29.57 -169.99 -5.03 9.58 16 12 H -0.26 -4.09 7.11 56.52 0.40 -3.68 16 13 H -0.27 -4.22 7.11 56.52 0.40 -3.82 16 14 H -0.25 -3.94 7.11 56.52 0.40 -3.54 16 15 N -0.64 -12.62 3.28 -9.77 -0.03 -12.65 16 16 C 0.46 8.83 5.86 -154.89 -0.91 7.92 16 17 C -0.21 -3.80 8.16 -38.88 -0.32 -4.11 16 18 C 0.02 0.34 5.90 -104.62 -0.62 -0.28 16 19 C -0.04 -0.59 5.87 -104.89 -0.62 -1.21 16 20 C -0.10 -1.44 9.45 -39.25 -0.37 -1.81 16 21 C -0.12 -1.46 10.03 -39.63 -0.40 -1.86 16 22 C -0.12 -1.33 10.04 -39.52 -0.40 -1.72 16 23 C -0.13 -1.36 10.03 -39.63 -0.40 -1.76 16 24 C -0.11 -1.32 9.45 -39.25 -0.37 -1.69 16 25 C -0.24 -3.56 9.49 -39.09 -0.37 -3.93 16 26 C 0.14 2.23 11.16 -17.63 -0.20 2.03 16 27 N -0.54 -10.06 10.38 -12.48 -0.13 -10.19 16 28 H 0.30 5.30 8.29 -40.82 -0.34 4.96 16 29 H 0.40 8.04 8.94 -40.82 -0.37 7.67 16 30 H 0.14 2.62 4.62 -52.48 -0.24 2.38 16 31 H 0.13 1.93 6.32 -52.49 -0.33 1.60 16 32 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 33 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 34 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 35 H 0.12 1.31 6.32 -52.49 -0.33 0.98 16 36 H 0.12 1.44 6.36 -52.49 -0.33 1.10 16 37 H 0.15 1.78 8.06 -52.49 -0.42 1.36 16 LS Contribution 339.32 15.07 5.11 5.11 Total: -1.00 -25.05 339.32 -7.73 -32.77 By element: Atomic # 1 Polarization: 15.59 SS G_CDS: -2.80 Total: 12.79 kcal Atomic # 6 Polarization: 5.67 SS G_CDS: -6.99 Total: -1.32 kcal Atomic # 7 Polarization: -60.92 SS G_CDS: 1.97 Total: -58.94 kcal Atomic # 14 Polarization: 14.61 SS G_CDS: -5.03 Total: 9.58 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -25.05 -7.73 -32.77 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158211435.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.699 kcal (2) G-P(sol) polarization free energy of solvation -25.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.774 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds