Wall clock time and date at job start Tue Mar 31 2020 10:46:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86798 * 119.99979 * 2 1 4 4 H 1.48502 * 109.46937 * 89.99921 * 3 2 1 5 5 H 1.48496 * 109.47135 * 209.99952 * 3 2 1 6 6 H 1.48492 * 109.47202 * 330.00004 * 3 2 1 7 7 C 1.37877 * 119.99590 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99577 * 173.46277 * 7 2 1 9 9 C 1.50696 * 120.00406 * 353.46272 * 7 2 1 10 10 H 1.08997 * 109.47112 * 326.77995 * 9 7 2 11 11 C 1.50699 * 109.47484 * 206.77801 * 9 7 2 12 12 O 1.21276 * 120.00153 * 240.00130 * 11 9 7 13 13 N 1.34778 * 119.99920 * 59.99772 * 11 9 7 14 14 N 1.40096 * 120.00007 * 180.02562 * 13 11 9 15 15 C 1.38689 * 119.99868 * 179.97438 * 14 13 11 16 16 N 1.32923 * 120.54015 * 0.02562 * 15 14 13 17 17 C 1.31786 * 120.71092 * 180.02562 * 16 15 14 18 18 N 1.31748 * 121.87984 * 359.97438 * 17 16 15 19 19 C 1.32575 * 121.02487 * 0.02562 * 18 17 16 20 20 C 1.38271 * 119.17038 * 359.71609 * 19 18 17 21 21 F 1.35103 * 120.85679 * 180.27621 * 20 19 18 22 22 C 1.50699 * 109.47040 * 86.77763 * 9 7 2 23 23 C 1.38239 * 120.00051 * 52.97133 * 22 9 7 24 24 C 1.38232 * 119.99981 * 179.78971 * 23 22 9 25 25 C 1.38231 * 119.99899 * 0.43783 * 24 23 22 26 26 C 1.38231 * 120.00168 * 359.81489 * 25 24 23 27 27 C 1.38233 * 120.00061 * 233.24244 * 22 9 7 28 28 H 0.96995 * 120.00069 * 174.55002 * 1 2 3 29 29 H 0.97003 * 120.00149 * 0.02562 * 13 11 9 30 30 H 0.96998 * 120.00342 * 0.02562 * 14 13 11 31 31 H 1.08004 * 119.05863 * 179.97438 * 17 16 15 32 32 H 1.08004 * 120.41398 * 180.02562 * 19 18 17 33 33 H 1.08000 * 119.99881 * 359.97438 * 23 22 9 34 34 H 1.08000 * 119.99827 * 180.27652 * 24 23 22 35 35 H 1.08003 * 119.99760 * 179.83685 * 25 24 23 36 36 H 1.08004 * 120.00251 * 179.97438 * 26 25 24 37 37 H 1.08003 * 120.00103 * 359.97438 * 27 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5467 1.4402 -0.7000 6 1 1.4467 2.6526 -0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0793 -1.1972 -0.1060 9 6 1.2584 -2.4948 0.1497 10 1 0.3919 -2.3449 0.7937 11 6 2.1676 -3.5281 0.7634 12 8 2.4194 -4.5495 0.1599 13 7 2.7011 -3.3171 1.9830 14 7 3.5468 -4.2774 2.5533 15 6 4.0962 -4.0599 3.8081 16 7 3.8272 -2.9445 4.4791 17 6 4.3478 -2.7342 5.6714 18 7 5.1482 -3.6093 6.2454 19 6 5.4644 -4.7457 5.6403 20 6 4.9378 -5.0128 4.3900 21 9 5.2329 -6.1626 3.7450 22 6 0.8009 -2.9697 -1.2054 23 6 1.7107 -3.0896 -2.2393 24 6 1.2918 -3.5293 -3.4810 25 6 -0.0385 -3.8406 -3.6914 26 6 -0.9492 -3.7158 -2.6590 27 6 -0.5296 -3.2801 -1.4161 28 1 -0.4850 -0.8362 -0.0798 29 1 2.4995 -2.5003 2.4659 30 1 3.7488 -5.0940 2.0704 31 1 4.1116 -1.8184 6.1929 32 1 6.1212 -5.4563 6.1201 33 1 2.7493 -2.8425 -2.0760 34 1 2.0034 -3.6272 -4.2875 35 1 -0.3662 -4.1817 -4.6624 36 1 -1.9887 -3.9585 -2.8235 37 1 -1.2411 -3.1827 -0.6094 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001159795954.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:46:25 Heat of formation + Delta-G solvation = 26.994578 kcal Electronic energy + Delta-G solvation = -25336.690118 eV Core-core repulsion = 21415.825890 eV Total energy + Delta-G solvation = -3920.864228 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.108 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.07415 -40.97555 -39.58766 -38.14500 -36.27603 -34.15599 -33.34210 -32.06705 -31.01524 -30.14214 -29.55202 -27.14937 -24.52571 -24.02448 -23.59137 -21.77727 -21.45159 -20.21898 -18.80630 -18.46633 -17.53030 -17.36185 -16.56579 -16.29338 -16.18281 -15.84148 -15.17507 -14.70700 -14.40444 -14.30858 -13.98931 -13.91344 -13.85901 -13.35351 -13.27870 -12.82324 -12.54644 -12.33829 -12.17228 -11.73983 -11.59192 -11.11584 -10.93853 -10.52462 -10.43029 -10.31145 -10.26164 -9.52676 -9.46193 -9.25514 -9.09289 -8.73290 -8.14160 -7.80443 -7.64994 -6.66403 -4.46429 0.66658 0.98973 1.86823 2.18543 2.26686 3.21066 3.30871 3.35835 3.49808 3.59657 3.64462 3.69693 4.04527 4.31909 4.49903 4.54482 4.68576 5.05010 5.22789 5.43121 5.56301 5.58498 5.66440 5.77390 5.94244 6.11467 6.26593 6.32658 6.45545 6.50258 6.72544 6.81972 6.85114 7.17674 7.22126 7.35396 7.45602 7.66914 7.79609 7.88431 8.00959 8.08667 8.48389 8.80422 9.26213 10.71039 Molecular weight = 316.11amu Principal moments of inertia in cm(-1) A = 0.012758 B = 0.004243 C = 0.003405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2194.101406 B = 6597.986893 C = 8221.220078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.036 3.964 3 Si 1.070 2.930 4 H -0.283 1.283 5 H -0.287 1.287 6 H -0.283 1.283 7 C -0.601 4.601 8 H 0.060 0.940 9 C 0.059 3.941 10 H 0.072 0.928 11 C 0.535 3.465 12 O -0.560 6.560 13 N -0.514 5.514 14 N -0.492 5.492 15 C 0.423 3.577 16 N -0.558 5.558 17 C 0.341 3.659 18 N -0.548 5.548 19 C 0.160 3.840 20 C -0.077 4.077 21 F -0.128 7.128 22 C -0.024 4.024 23 C -0.077 4.077 24 C -0.132 4.132 25 C -0.142 4.142 26 C -0.128 4.128 27 C -0.125 4.125 28 H 0.275 0.725 29 H 0.440 0.560 30 H 0.444 0.556 31 H 0.205 0.795 32 H 0.177 0.823 33 H 0.113 0.887 34 H 0.109 0.891 35 H 0.108 0.892 36 H 0.110 0.890 37 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.668 -6.528 6.756 10.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.172 4.172 3 Si 0.897 3.103 4 H -0.209 1.209 5 H -0.213 1.213 6 H -0.208 1.208 7 C -0.638 4.638 8 H 0.079 0.921 9 C 0.036 3.964 10 H 0.089 0.911 11 C 0.324 3.676 12 O -0.437 6.437 13 N -0.264 5.264 14 N -0.216 5.216 15 C 0.174 3.826 16 N -0.283 5.283 17 C 0.052 3.948 18 N -0.267 5.267 19 C -0.003 4.003 20 C -0.109 4.109 21 F -0.107 7.107 22 C -0.026 4.026 23 C -0.095 4.095 24 C -0.150 4.150 25 C -0.161 4.161 26 C -0.146 4.146 27 C -0.143 4.143 28 H 0.087 0.913 29 H 0.284 0.716 30 H 0.289 0.711 31 H 0.222 0.778 32 H 0.194 0.806 33 H 0.131 0.869 34 H 0.127 0.873 35 H 0.126 0.874 36 H 0.128 0.872 37 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 5.275 -4.713 6.685 9.732 hybrid contribution 0.437 -2.525 -0.734 2.666 sum 5.712 -7.238 5.951 10.974 Atomic orbital electron populations 1.70757 1.06907 1.31480 1.43039 1.25876 0.96269 1.02588 0.92429 0.83511 0.74772 0.74806 0.77201 1.20883 1.21272 1.20827 1.21602 0.94820 0.89291 1.58101 0.92129 1.18081 0.95040 0.92632 0.90632 0.91070 1.21955 0.79983 0.87838 0.77808 1.90628 1.62506 1.29211 1.61322 1.45383 1.44864 1.17497 1.18656 1.43273 1.45833 1.18908 1.13615 1.18571 0.88502 0.89711 0.85807 1.68019 1.29441 1.19545 1.11318 1.24806 0.86446 0.97259 0.86291 1.68483 1.18189 1.03430 1.36614 1.23058 0.94313 0.94270 0.88627 1.18593 1.08522 0.86913 0.96906 1.91502 1.92358 1.45878 1.80940 1.20019 0.92721 0.93264 0.96564 1.20806 0.99519 0.97098 0.92116 1.20996 0.95686 1.01226 0.97110 1.20859 0.93766 1.03063 0.98369 1.20900 0.98661 1.01437 0.93620 1.20974 0.95779 1.00500 0.97056 0.91318 0.71571 0.71083 0.77836 0.80599 0.86905 0.87271 0.87368 0.87218 0.87114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.78 13.56 55.43 0.75 -23.03 16 2 C 0.04 0.92 5.45 -17.82 -0.10 0.82 16 3 Si 1.07 22.89 29.91 -169.99 -5.08 17.80 16 4 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 5 H -0.29 -5.97 7.11 56.52 0.40 -5.57 16 6 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 7 C -0.60 -14.62 7.42 -34.44 -0.26 -14.87 16 8 H 0.06 1.51 7.82 -52.48 -0.41 1.10 16 9 C 0.06 1.33 1.92 -94.08 -0.18 1.15 16 10 H 0.07 1.65 6.82 -51.93 -0.35 1.29 16 11 C 0.53 11.36 7.16 -10.99 -0.08 11.28 16 12 O -0.56 -12.81 15.30 5.56 0.09 -12.73 16 13 N -0.51 -9.52 6.19 31.22 0.19 -9.33 16 14 N -0.49 -7.98 6.41 31.29 0.20 -7.78 16 15 C 0.42 6.14 7.65 -154.62 -1.18 4.96 16 16 N -0.56 -7.90 9.52 -13.74 -0.13 -8.03 16 17 C 0.34 3.92 12.28 -92.20 -1.13 2.79 16 18 N -0.55 -6.24 10.43 -14.62 -0.15 -6.40 16 19 C 0.16 1.68 11.28 -17.22 -0.19 1.49 16 20 C -0.08 -0.96 7.39 -38.98 -0.29 -1.25 16 21 F -0.13 -1.58 16.76 2.25 0.04 -1.54 16 22 C -0.02 -0.55 4.03 -104.62 -0.42 -0.97 16 23 C -0.08 -1.69 8.36 -39.58 -0.33 -2.02 16 24 C -0.13 -2.52 10.05 -39.59 -0.40 -2.92 16 25 C -0.14 -2.54 10.05 -39.59 -0.40 -2.94 16 26 C -0.13 -2.36 10.05 -39.59 -0.40 -2.76 16 27 C -0.12 -2.58 9.25 -39.58 -0.37 -2.95 16 28 H 0.28 7.27 6.30 -40.82 -0.26 7.01 16 29 H 0.44 8.08 7.88 -182.60 -1.44 6.65 16 30 H 0.44 7.05 7.57 -182.60 -1.38 5.66 16 31 H 0.21 1.64 8.06 -52.48 -0.42 1.21 16 32 H 0.18 1.24 8.06 -52.48 -0.42 0.81 16 33 H 0.11 2.52 7.86 -52.49 -0.41 2.11 16 34 H 0.11 1.78 8.06 -52.49 -0.42 1.35 16 35 H 0.11 1.59 8.06 -52.48 -0.42 1.16 16 36 H 0.11 1.69 8.06 -52.48 -0.42 1.27 16 37 H 0.11 2.15 7.96 -52.48 -0.42 1.73 16 LS Contribution 334.23 15.07 5.04 5.04 Total: -1.00 -29.17 334.23 -10.37 -39.53 By element: Atomic # 1 Polarization: 20.25 SS G_CDS: -5.58 Total: 14.66 kcal Atomic # 6 Polarization: -2.48 SS G_CDS: -5.72 Total: -8.20 kcal Atomic # 7 Polarization: -55.43 SS G_CDS: 0.86 Total: -54.57 kcal Atomic # 8 Polarization: -12.81 SS G_CDS: 0.09 Total: -12.73 kcal Atomic # 9 Polarization: -1.58 SS G_CDS: 0.04 Total: -1.54 kcal Atomic # 14 Polarization: 22.89 SS G_CDS: -5.08 Total: 17.80 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -29.17 -10.37 -39.53 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001159795954.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.529 kcal (2) G-P(sol) polarization free energy of solvation -29.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.534 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds