Wall clock time and date at job start Tue Mar 31 2020 10:46:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86798 * 119.99979 * 2 1 4 4 H 1.48502 * 109.46937 * 89.99921 * 3 2 1 5 5 H 1.48496 * 109.47135 * 209.99952 * 3 2 1 6 6 H 1.48492 * 109.47202 * 330.00004 * 3 2 1 7 7 C 1.37877 * 119.99590 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99577 * 173.46277 * 7 2 1 9 9 C 1.50696 * 120.00406 * 353.46272 * 7 2 1 10 10 H 1.08997 * 109.47112 * 326.77995 * 9 7 2 11 11 C 1.50699 * 109.47484 * 206.77801 * 9 7 2 12 12 O 1.21276 * 120.00153 * 240.00130 * 11 9 7 13 13 N 1.34778 * 119.99920 * 59.99772 * 11 9 7 14 14 N 1.40096 * 120.00007 * 180.02562 * 13 11 9 15 15 C 1.38689 * 119.99868 * 179.97438 * 14 13 11 16 16 N 1.32923 * 120.54015 * 0.02562 * 15 14 13 17 17 C 1.31786 * 120.71092 * 180.02562 * 16 15 14 18 18 N 1.31748 * 121.87984 * 359.97438 * 17 16 15 19 19 C 1.32575 * 121.02487 * 0.02562 * 18 17 16 20 20 C 1.38271 * 119.17038 * 359.71609 * 19 18 17 21 21 F 1.35103 * 120.85679 * 180.27621 * 20 19 18 22 22 C 1.50699 * 109.47040 * 86.77763 * 9 7 2 23 23 C 1.38239 * 120.00051 * 52.97133 * 22 9 7 24 24 C 1.38232 * 119.99981 * 179.78971 * 23 22 9 25 25 C 1.38231 * 119.99899 * 0.43783 * 24 23 22 26 26 C 1.38231 * 120.00168 * 359.81489 * 25 24 23 27 27 C 1.38233 * 120.00061 * 233.24244 * 22 9 7 28 28 H 0.96995 * 120.00069 * 174.55002 * 1 2 3 29 29 H 0.97003 * 120.00149 * 0.02562 * 13 11 9 30 30 H 0.96998 * 120.00342 * 0.02562 * 14 13 11 31 31 H 1.08004 * 119.05863 * 179.97438 * 17 16 15 32 32 H 1.08004 * 120.41398 * 180.02562 * 19 18 17 33 33 H 1.08000 * 119.99881 * 359.97438 * 23 22 9 34 34 H 1.08000 * 119.99827 * 180.27652 * 24 23 22 35 35 H 1.08003 * 119.99760 * 179.83685 * 25 24 23 36 36 H 1.08004 * 120.00251 * 179.97438 * 26 25 24 37 37 H 1.08003 * 120.00103 * 359.97438 * 27 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5467 1.4402 -0.7000 6 1 1.4467 2.6526 -0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0793 -1.1972 -0.1060 9 6 1.2584 -2.4948 0.1497 10 1 0.3919 -2.3449 0.7937 11 6 2.1676 -3.5281 0.7634 12 8 2.4194 -4.5495 0.1599 13 7 2.7011 -3.3171 1.9830 14 7 3.5468 -4.2774 2.5533 15 6 4.0962 -4.0599 3.8081 16 7 3.8272 -2.9445 4.4791 17 6 4.3478 -2.7342 5.6714 18 7 5.1482 -3.6093 6.2454 19 6 5.4644 -4.7457 5.6403 20 6 4.9378 -5.0128 4.3900 21 9 5.2329 -6.1626 3.7450 22 6 0.8009 -2.9697 -1.2054 23 6 1.7107 -3.0896 -2.2393 24 6 1.2918 -3.5293 -3.4810 25 6 -0.0385 -3.8406 -3.6914 26 6 -0.9492 -3.7158 -2.6590 27 6 -0.5296 -3.2801 -1.4161 28 1 -0.4850 -0.8362 -0.0798 29 1 2.4995 -2.5003 2.4659 30 1 3.7488 -5.0940 2.0704 31 1 4.1116 -1.8184 6.1929 32 1 6.1212 -5.4563 6.1201 33 1 2.7493 -2.8425 -2.0760 34 1 2.0034 -3.6272 -4.2875 35 1 -0.3662 -4.1817 -4.6624 36 1 -1.9887 -3.9585 -2.8235 37 1 -1.2411 -3.1827 -0.6094 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001159795954.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:46:24 Heat of formation + Delta-G solvation = 11.065218 kcal Electronic energy + Delta-G solvation = -25337.380867 eV Core-core repulsion = 21415.825890 eV Total energy + Delta-G solvation = -3921.554977 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.108 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -50.05647 -42.02036 -41.16442 -39.64768 -37.61297 -35.96588 -34.49763 -33.27374 -32.69023 -31.67191 -30.77956 -28.76213 -25.86357 -25.38206 -24.83978 -23.32412 -22.94387 -21.74029 -20.12220 -19.72664 -18.98780 -18.51249 -17.96669 -17.60167 -17.36386 -17.24377 -16.48536 -16.14812 -15.91087 -15.65459 -15.61243 -15.21608 -14.93831 -14.87704 -14.41437 -14.32255 -14.08977 -13.91261 -13.61038 -13.30248 -12.92820 -12.60913 -12.57755 -12.00945 -11.95659 -11.83771 -11.68652 -11.06711 -10.90164 -10.66845 -10.62270 -10.39116 -9.68610 -9.40349 -8.95308 -8.64553 -6.44213 -0.27702 -0.03796 0.47743 0.63849 0.80704 1.52723 1.59557 1.64528 1.80553 2.47949 2.54689 2.61528 2.69836 3.02310 3.15928 3.20952 3.49236 3.57098 3.98331 4.09586 4.17548 4.29319 4.31843 4.35437 4.58118 4.59203 4.79488 4.86036 5.01807 5.20605 5.28345 5.44554 5.59449 5.64909 5.67954 5.69118 5.98450 6.03672 6.12331 6.27390 6.40614 6.51749 6.97136 7.22270 7.33767 8.73011 Molecular weight = 316.11amu Principal moments of inertia in cm(-1) A = 0.012758 B = 0.004243 C = 0.003405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2194.101406 B = 6597.986893 C = 8221.220078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.003 4.003 3 Si 1.108 2.892 4 H -0.265 1.265 5 H -0.280 1.280 6 H -0.287 1.287 7 C -0.595 4.595 8 H 0.048 0.952 9 C 0.059 3.941 10 H 0.057 0.943 11 C 0.534 3.466 12 O -0.581 6.581 13 N -0.507 5.507 14 N -0.503 5.503 15 C 0.405 3.595 16 N -0.580 5.580 17 C 0.340 3.660 18 N -0.546 5.546 19 C 0.176 3.824 20 C -0.080 4.080 21 F -0.128 7.128 22 C -0.050 4.050 23 C -0.105 4.105 24 C -0.134 4.134 25 C -0.137 4.137 26 C -0.126 4.126 27 C -0.146 4.146 28 H 0.268 0.732 29 H 0.440 0.560 30 H 0.443 0.557 31 H 0.236 0.764 32 H 0.217 0.783 33 H 0.094 0.906 34 H 0.137 0.863 35 H 0.150 0.850 36 H 0.144 0.856 37 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.368 -6.941 7.133 11.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.205 4.205 3 Si 0.931 3.069 4 H -0.190 1.190 5 H -0.205 1.205 6 H -0.213 1.213 7 C -0.632 4.632 8 H 0.066 0.934 9 C 0.036 3.964 10 H 0.075 0.925 11 C 0.323 3.677 12 O -0.460 6.460 13 N -0.254 5.254 14 N -0.229 5.229 15 C 0.159 3.841 16 N -0.306 5.306 17 C 0.052 3.948 18 N -0.264 5.264 19 C 0.012 3.988 20 C -0.111 4.111 21 F -0.107 7.107 22 C -0.051 4.051 23 C -0.124 4.124 24 C -0.152 4.152 25 C -0.155 4.155 26 C -0.144 4.144 27 C -0.164 4.164 28 H 0.078 0.922 29 H 0.284 0.716 30 H 0.288 0.712 31 H 0.252 0.748 32 H 0.233 0.767 33 H 0.112 0.888 34 H 0.155 0.845 35 H 0.168 0.832 36 H 0.162 0.838 37 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 5.999 -5.120 7.128 10.630 hybrid contribution 0.285 -2.485 -0.740 2.608 sum 6.284 -7.605 6.388 11.753 Atomic orbital electron populations 1.70834 1.07673 1.31104 1.45431 1.26955 0.96332 1.05355 0.91884 0.83013 0.73957 0.71822 0.78108 1.19047 1.20503 1.21311 1.21653 0.94180 0.90286 1.57112 0.93360 1.17984 0.94626 0.92542 0.91206 0.92499 1.21600 0.80174 0.87352 0.78549 1.90592 1.63424 1.29850 1.62129 1.45032 1.44628 1.17867 1.17868 1.43266 1.46641 1.18466 1.14577 1.18843 0.89179 0.90746 0.85317 1.68043 1.30294 1.19780 1.12463 1.25482 0.85634 0.98213 0.85458 1.68611 1.17774 1.03615 1.36393 1.23705 0.93332 0.94274 0.87464 1.18712 1.08377 0.86555 0.97469 1.91505 1.92327 1.45791 1.81104 1.20059 0.93810 0.94889 0.96316 1.20833 0.98696 0.99204 0.93639 1.21359 0.97207 1.00004 0.96610 1.21340 0.92883 1.01391 0.99903 1.21334 1.00627 0.99837 0.92620 1.21179 0.95221 1.01460 0.98580 0.92158 0.71625 0.71216 0.74785 0.76683 0.88760 0.84486 0.83227 0.83830 0.86980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.28 13.56 21.45 0.29 -49.99 16 2 C 0.00 -0.14 5.45 84.65 0.46 0.32 16 3 Si 1.11 46.49 29.91 68.60 2.05 48.54 16 4 H -0.27 -10.31 7.11 99.48 0.71 -9.61 16 5 H -0.28 -11.27 7.11 99.48 0.71 -10.57 16 6 H -0.29 -12.21 7.11 99.48 0.71 -11.50 16 7 C -0.59 -30.02 7.42 25.60 0.19 -29.83 16 8 H 0.05 2.50 7.82 -2.91 -0.02 2.48 16 9 C 0.06 2.81 1.92 -13.03 -0.03 2.78 16 10 H 0.06 2.81 6.82 -2.39 -0.02 2.79 16 11 C 0.53 23.81 7.16 87.66 0.63 24.44 16 12 O -0.58 -27.72 15.30 -3.02 -0.05 -27.76 16 13 N -0.51 -19.56 6.19 -173.54 -1.07 -20.64 16 14 N -0.50 -16.76 6.41 -54.91 -0.35 -17.12 16 15 C 0.41 11.68 7.65 133.18 1.02 12.70 16 16 N -0.58 -16.09 9.52 -197.39 -1.88 -17.97 16 17 C 0.34 7.18 12.28 180.90 2.22 9.40 16 18 N -0.55 -10.97 10.43 -200.17 -2.09 -13.06 16 19 C 0.18 3.20 11.28 84.59 0.95 4.15 16 20 C -0.08 -1.88 7.39 22.66 0.17 -1.71 16 21 F -0.13 -3.04 16.76 44.97 0.75 -2.29 16 22 C -0.05 -2.30 4.03 -19.87 -0.08 -2.38 16 23 C -0.11 -4.72 8.36 22.27 0.19 -4.53 16 24 C -0.13 -4.96 10.05 22.27 0.22 -4.74 16 25 C -0.14 -4.55 10.05 22.27 0.22 -4.32 16 26 C -0.13 -4.45 10.05 22.27 0.22 -4.22 16 27 C -0.15 -6.14 9.25 22.27 0.21 -5.93 16 28 H 0.27 14.69 6.30 -92.71 -0.58 14.11 16 29 H 0.44 16.85 7.88 -213.32 -1.68 15.17 16 30 H 0.44 14.60 7.57 -213.33 -1.62 12.98 16 31 H 0.24 3.19 8.06 -2.91 -0.02 3.17 16 32 H 0.22 2.13 8.06 -2.91 -0.02 2.11 16 33 H 0.09 4.43 7.86 -2.91 -0.02 4.40 16 34 H 0.14 4.18 8.06 -2.91 -0.02 4.15 16 35 H 0.15 3.70 8.06 -2.91 -0.02 3.68 16 36 H 0.14 3.99 8.06 -2.91 -0.02 3.97 16 37 H 0.11 4.50 7.96 -2.91 -0.02 4.48 16 Total: -1.00 -64.62 334.23 2.29 -62.33 By element: Atomic # 1 Polarization: 43.78 SS G_CDS: -1.96 Total: 41.82 kcal Atomic # 6 Polarization: -10.46 SS G_CDS: 6.60 Total: -3.86 kcal Atomic # 7 Polarization: -113.67 SS G_CDS: -5.10 Total: -118.77 kcal Atomic # 8 Polarization: -27.72 SS G_CDS: -0.05 Total: -27.76 kcal Atomic # 9 Polarization: -3.04 SS G_CDS: 0.75 Total: -2.29 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 2.05 Total: 48.54 kcal Total: -64.62 2.29 -62.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001159795954.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.393 kcal (2) G-P(sol) polarization free energy of solvation -64.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.328 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds