Wall clock time and date at job start Tue Mar 31 2020 11:05:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38235 * 119.99357 * 2 1 4 4 C 1.38330 * 119.98877 * 179.74399 * 3 2 1 5 5 Cl 1.73602 * 120.01376 * 180.29059 * 4 3 2 6 6 C 1.38369 * 119.97460 * 0.53061 * 4 3 2 7 7 C 1.38199 * 119.98646 * 359.74138 * 6 4 3 8 8 C 1.38225 * 119.99973 * 180.27188 * 2 1 3 9 9 C 1.50699 * 119.98009 * 359.97438 * 8 2 1 10 10 H 1.08998 * 109.47546 * 325.00050 * 9 8 2 11 11 C 1.53007 * 109.47073 * 85.00211 * 9 8 2 12 12 N 1.46495 * 109.47080 * 204.99900 * 9 8 2 13 13 C 1.39081 * 120.00073 * 155.00454 * 12 9 8 14 14 C 1.38750 * 119.65739 * 359.72375 * 13 12 9 15 15 C 1.40779 * 118.66576 * 179.75921 * 14 13 12 16 16 C 1.41557 * 120.98985 * 180.26183 * 15 14 13 17 17 H 1.07993 * 119.99625 * 203.46753 * 16 15 14 18 18 C 1.40021 * 119.99793 * 23.46865 * 16 15 14 19 19 N 1.30745 * 120.00338 * 17.09090 * 18 16 15 20 20 Si 1.86804 * 119.99834 * 197.09271 * 18 16 15 21 21 H 1.48497 * 109.47374 * 59.99782 * 20 18 16 22 22 H 1.48501 * 109.47023 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.47000 * 299.99572 * 20 18 16 24 24 C 1.41185 * 118.01431 * 0.50904 * 15 14 13 25 25 C 1.36559 * 119.14795 * 359.75015 * 24 15 14 26 26 N 1.32092 * 121.26767 * 359.97438 * 25 24 15 27 27 H 1.09000 * 109.47329 * 269.72374 * 1 2 3 28 28 H 1.09005 * 109.46586 * 149.72694 * 1 2 3 29 29 H 1.09002 * 109.47268 * 29.72979 * 1 2 3 30 30 H 1.08008 * 120.00439 * 0.02562 * 3 2 1 31 31 H 1.08001 * 120.01405 * 179.76873 * 6 4 3 32 32 H 1.08000 * 119.99283 * 180.02562 * 7 6 4 33 33 H 1.09004 * 109.46805 * 59.99912 * 11 9 8 34 34 H 1.09001 * 109.47507 * 179.97438 * 11 9 8 35 35 H 1.08999 * 109.47045 * 300.00331 * 11 9 8 36 36 H 0.96998 * 120.00172 * 335.00624 * 12 9 8 37 37 H 1.07997 * 120.66301 * 0.02831 * 14 13 12 38 38 H 0.96999 * 120.00368 * 180.02562 * 19 18 16 39 39 H 1.08005 * 120.42389 * 179.77546 * 24 15 14 40 40 H 1.07996 * 119.35984 * 180.02562 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1980 1.1972 0.0000 4 6 3.5813 1.1971 0.0054 5 17 4.4497 2.7003 0.0130 6 6 4.2725 -0.0015 -0.0004 7 6 3.5806 -1.1978 -0.0061 8 6 2.1980 -1.1971 -0.0057 9 6 1.4441 -2.5019 -0.0113 10 1 0.5337 -2.3980 0.5789 11 6 1.0796 -2.8741 -1.4499 12 7 2.2839 -3.5536 0.5673 13 6 1.6959 -4.6728 1.1471 14 6 0.3132 -4.7832 1.1787 15 6 -0.2597 -5.9272 1.7659 16 6 -1.6645 -6.0930 1.8198 17 1 -2.1039 -6.7360 2.5679 18 6 -2.4841 -5.4233 0.9031 19 7 -1.9699 -4.9236 -0.1902 20 14 -4.3123 -5.2438 1.2423 21 1 -4.5095 -4.4982 2.5113 22 1 -4.9521 -4.5012 0.1267 23 1 -4.9288 -6.5898 1.3581 24 6 0.6086 -6.9017 2.3043 25 6 1.9578 -6.7033 2.2317 26 7 2.4622 -5.6202 1.6684 27 1 -0.3634 -0.0050 1.0276 28 1 -0.3633 -0.8876 -0.5181 29 1 -0.3634 0.8924 -0.5096 30 1 1.6579 2.1326 0.0004 31 1 5.3525 -0.0023 0.0000 32 1 4.1200 -2.1335 -0.0101 33 1 1.9901 -2.9780 -2.0401 34 1 0.5346 -3.8181 -1.4541 35 1 0.4548 -2.0915 -1.8805 36 1 3.2499 -3.4694 0.5462 37 1 -0.3109 -4.0091 0.7572 38 1 -2.5377 -4.4594 -0.8251 39 1 0.2109 -7.7927 2.7672 40 1 2.6251 -7.4466 2.6421 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001160997190.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:52 Heat of formation + Delta-G solvation = 41.663783 kcal Electronic energy + Delta-G solvation = -23486.880193 eV Core-core repulsion = 20098.528788 eV Total energy + Delta-G solvation = -3388.351405 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 316.104 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.01536 -38.41852 -36.81282 -35.54411 -34.06842 -33.00814 -31.40788 -30.40506 -29.01833 -27.61402 -26.96728 -25.87341 -23.64906 -22.17384 -21.76315 -20.67110 -19.83740 -17.91045 -16.85608 -16.18498 -15.63922 -15.38477 -15.03212 -14.53239 -14.27752 -13.94439 -13.83900 -13.63370 -13.23679 -13.09293 -12.85978 -12.66039 -12.50054 -12.43620 -12.16626 -11.98146 -11.64445 -11.42110 -11.28586 -11.17646 -11.10270 -10.90644 -10.79969 -10.48290 -10.24740 -9.85870 -9.44152 -9.07026 -8.92723 -8.48665 -7.98480 -7.87144 -6.84268 -6.45098 -4.55607 1.08077 1.21027 2.02045 2.82318 3.01332 3.03648 3.04985 3.33099 3.51909 3.87141 4.04556 4.65525 4.69727 4.74610 4.80918 5.11121 5.24157 5.43626 5.54902 5.63364 5.68132 5.71389 5.84068 5.85733 5.96810 6.05063 6.10830 6.17695 6.22827 6.34160 6.53176 6.70142 6.74435 6.80886 6.89737 6.96780 7.06697 7.26835 7.54691 7.86166 7.95645 8.13528 8.42368 8.75877 8.83388 8.89427 9.75132 10.10642 Molecular weight = 316.10amu Principal moments of inertia in cm(-1) A = 0.016080 B = 0.003648 C = 0.003119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1740.927646 B = 7673.867458 C = 8974.186089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.063 4.063 3 C -0.110 4.110 4 C -0.037 4.037 5 Cl -0.080 7.080 6 C -0.113 4.113 7 C -0.097 4.097 8 C -0.072 4.072 9 C 0.202 3.798 10 H 0.094 0.906 11 C -0.162 4.162 12 N -0.738 5.738 13 C 0.386 3.614 14 C -0.279 4.279 15 C 0.152 3.848 16 C -0.457 4.457 17 H 0.078 0.922 18 C 0.081 3.919 19 N -0.783 5.783 20 Si 0.906 3.094 21 H -0.263 1.263 22 H -0.278 1.278 23 H -0.265 1.265 24 C -0.302 4.302 25 C 0.131 3.869 26 N -0.624 5.624 27 H 0.077 0.923 28 H 0.080 0.920 29 H 0.068 0.932 30 H 0.131 0.869 31 H 0.131 0.869 32 H 0.133 0.867 33 H 0.049 0.951 34 H 0.084 0.916 35 H 0.056 0.944 36 H 0.386 0.614 37 H 0.129 0.871 38 H 0.280 0.720 39 H 0.097 0.903 40 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.815 12.248 -2.894 13.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.064 4.064 3 C -0.129 4.129 4 C -0.064 4.064 5 Cl -0.052 7.052 6 C -0.132 4.132 7 C -0.116 4.116 8 C -0.073 4.073 9 C 0.096 3.904 10 H 0.111 0.889 11 C -0.221 4.221 12 N -0.376 5.376 13 C 0.158 3.842 14 C -0.305 4.305 15 C 0.143 3.857 16 C -0.488 4.488 17 H 0.097 0.903 18 C -0.138 4.138 19 N -0.408 5.408 20 Si 0.730 3.270 21 H -0.188 1.188 22 H -0.203 1.203 23 H -0.190 1.190 24 C -0.327 4.327 25 C -0.022 4.022 26 N -0.346 5.346 27 H 0.095 0.905 28 H 0.099 0.901 29 H 0.087 0.913 30 H 0.149 0.851 31 H 0.149 0.851 32 H 0.150 0.850 33 H 0.068 0.932 34 H 0.103 0.897 35 H 0.075 0.925 36 H 0.222 0.778 37 H 0.147 0.853 38 H 0.091 0.909 39 H 0.115 0.885 40 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 5.580 12.676 -3.195 14.214 hybrid contribution -1.205 0.103 0.087 1.213 sum 4.375 12.779 -3.108 13.860 Atomic orbital electron populations 1.20959 0.90284 1.03624 1.03242 1.19658 0.96534 0.91450 0.98760 1.20862 0.91823 0.98452 1.01778 1.20842 0.92387 0.86799 1.06354 1.98354 1.76878 1.32840 1.97082 1.20976 1.00303 0.90617 1.01325 1.20913 0.93738 0.97654 0.99285 1.20173 0.93901 0.95087 0.98161 1.19545 0.93284 0.82548 0.95039 0.88863 1.22277 1.01353 1.03335 0.95092 1.44246 1.07155 1.19916 1.66262 1.18100 0.89247 0.86231 0.90615 1.21518 0.91421 1.02072 1.15520 1.17583 0.93065 0.88687 0.86328 1.19547 0.90955 1.24500 1.13783 0.90346 1.25897 1.01236 0.93042 0.93619 1.69792 1.38137 1.26552 1.06312 0.86407 0.81888 0.79559 0.79129 1.18794 1.20257 1.18985 1.21496 0.94212 1.01948 1.15068 1.21211 0.92894 0.92962 0.95097 1.66718 1.40183 1.05202 1.22546 0.90454 0.90093 0.91301 0.85061 0.85098 0.84972 0.93200 0.89667 0.92521 0.77792 0.85294 0.90891 0.88514 0.86471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.42 9.22 36.00 0.33 -1.09 16 2 C -0.06 -0.81 5.88 -104.63 -0.62 -1.42 16 3 C -0.11 -1.30 9.48 -39.55 -0.38 -1.67 16 4 C -0.04 -0.44 6.32 -39.50 -0.25 -0.69 16 5 Cl -0.08 -0.86 28.96 -51.86 -1.50 -2.36 16 6 C -0.11 -1.35 9.83 -39.55 -0.39 -1.74 16 7 C -0.10 -1.28 9.23 -39.59 -0.37 -1.64 16 8 C -0.07 -1.02 5.06 -104.62 -0.53 -1.55 16 9 C 0.20 3.35 1.78 -69.08 -0.12 3.23 16 10 H 0.09 1.70 5.29 -51.93 -0.27 1.43 16 11 C -0.16 -2.61 9.21 37.16 0.34 -2.27 16 12 N -0.74 -14.07 5.17 -55.11 -0.28 -14.35 16 13 C 0.39 9.04 7.63 -154.97 -1.18 7.85 16 14 C -0.28 -6.96 7.53 -38.43 -0.29 -7.25 16 15 C 0.15 3.97 5.61 -106.55 -0.60 3.37 16 16 C -0.46 -11.71 9.12 -37.65 -0.34 -12.05 16 17 H 0.08 1.94 7.90 -52.49 -0.41 1.53 16 18 C 0.08 1.93 5.20 -17.35 -0.09 1.84 16 19 N -0.78 -18.64 10.91 55.55 0.61 -18.03 16 20 Si 0.91 17.72 29.59 -169.99 -5.03 12.69 16 21 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 22 H -0.28 -5.25 7.11 56.52 0.40 -4.85 16 23 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 24 C -0.30 -7.40 9.85 -39.07 -0.38 -7.79 16 25 C 0.13 3.04 11.10 -18.05 -0.20 2.84 16 26 N -0.62 -14.98 10.37 -12.82 -0.13 -15.11 16 27 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.08 0.99 5.42 -51.93 -0.28 0.71 16 29 H 0.07 0.64 8.08 -51.93 -0.42 0.22 16 30 H 0.13 1.29 8.06 -52.48 -0.42 0.87 16 31 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 32 H 0.13 1.65 6.07 -52.49 -0.32 1.33 16 33 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.08 1.65 7.69 -51.93 -0.40 1.26 16 35 H 0.06 0.80 6.90 -51.93 -0.36 0.44 16 36 H 0.39 6.77 6.33 -40.82 -0.26 6.51 16 37 H 0.13 3.18 4.23 -52.49 -0.22 2.96 16 38 H 0.28 6.06 8.29 -40.82 -0.34 5.72 16 39 H 0.10 2.20 8.06 -52.48 -0.42 1.78 16 40 H 0.12 2.33 8.06 -52.49 -0.42 1.91 16 LS Contribution 343.09 15.07 5.17 5.17 Total: -1.00 -27.25 343.09 -10.85 -38.10 By element: Atomic # 1 Polarization: 18.56 SS G_CDS: -4.62 Total: 13.94 kcal Atomic # 6 Polarization: -14.98 SS G_CDS: -5.06 Total: -20.04 kcal Atomic # 7 Polarization: -47.69 SS G_CDS: 0.19 Total: -47.50 kcal Atomic # 14 Polarization: 17.72 SS G_CDS: -5.03 Total: 12.69 kcal Atomic # 17 Polarization: -0.86 SS G_CDS: -1.50 Total: -2.36 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -27.25 -10.85 -38.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160997190.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.764 kcal (2) G-P(sol) polarization free energy of solvation -27.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.100 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds