Wall clock time and date at job start Tue Mar 31 2020 11:24:33
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53007 * 1
3 3 C 1.53002 * 109.47153 * 2 1
4 4 H 1.08998 * 109.46998 * 175.20617 * 3 2 1
5 5 C 1.50704 * 109.46993 * 55.20514 * 3 2 1
6 6 H 1.08007 * 119.99667 * 245.74978 * 5 3 2
7 7 C 1.37870 * 120.00132 * 65.75650 * 5 3 2
8 8 N 1.31516 * 120.00199 * 5.53260 * 7 5 3
9 9 Si 1.86798 * 120.00053 * 185.53612 * 7 5 3
10 10 H 1.48499 * 109.47550 * 179.97438 * 9 7 5
11 11 H 1.48494 * 109.47297 * 299.99938 * 9 7 5
12 12 H 1.48506 * 109.47384 * 59.99824 * 9 7 5
13 13 N 1.46503 * 109.47086 * 295.20658 * 3 2 1
14 14 C 1.39032 * 119.99657 * 279.63040 * 13 3 2
15 15 C 1.38900 * 119.64069 * 4.94653 * 14 13 3
16 16 C 1.39475 * 118.98422 * 180.02562 * 15 14 13
17 17 C 1.48385 * 120.85631 * 180.02562 * 16 15 14
18 18 C 1.39340 * 120.11796 * 359.72809 * 17 16 15
19 19 C 1.38026 * 119.87163 * 179.74283 * 18 17 16
20 20 C 1.38316 * 120.12247 * 0.52793 * 19 18 17
21 21 C 1.38325 * 120.24641 * 359.72298 * 20 19 18
22 22 C 1.38020 * 120.12005 * 0.02562 * 21 20 19
23 23 C 1.39916 * 118.28509 * 359.97438 * 16 15 14
24 24 C 1.37977 * 119.17880 * 359.97438 * 23 16 15
25 25 Cl 1.73606 * 119.52534 * 180.02562 * 24 23 16
26 26 N 1.32109 * 120.94808 * 359.73465 * 24 23 16
27 27 H 1.08996 * 109.47220 * 184.94984 * 1 2 3
28 28 H 1.09004 * 109.46955 * 304.95111 * 1 2 3
29 29 H 1.09000 * 109.47134 * 64.94351 * 1 2 3
30 30 H 1.08999 * 109.47106 * 239.99921 * 2 1 3
31 31 H 1.09001 * 109.46581 * 119.99612 * 2 1 3
32 32 H 0.97003 * 119.99670 * 355.16719 * 8 7 5
33 33 H 0.96995 * 119.99900 * 99.63148 * 13 3 2
34 34 H 1.07999 * 120.50945 * 0.02562 * 15 14 13
35 35 H 1.07994 * 120.06525 * 359.97438 * 18 17 16
36 36 H 1.08000 * 119.93644 * 180.25710 * 19 18 17
37 37 H 1.08003 * 119.88273 * 179.74567 * 20 19 18
38 38 H 1.08000 * 119.94192 * 180.02562 * 21 20 19
39 39 H 1.07998 * 120.06261 * 180.02562 * 22 21 20
40 40 H 1.08003 * 120.40692 * 180.02562 * 23 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0401 1.4425 0.0000
4 1 3.1267 1.4437 0.0859
5 6 1.4431 2.1864 1.1668
6 1 0.7585 3.0035 0.9930
7 6 1.7709 1.8239 2.4560
8 7 2.6858 0.9031 2.6678
9 14 0.9156 2.6406 3.9019
10 1 1.4429 2.0782 5.1711
11 1 1.1689 4.1033 3.8652
12 1 -0.5457 2.3891 3.8192
13 7 1.6483 2.0990 -1.2497
14 6 2.3848 1.8829 -2.4090
15 6 3.4270 0.9648 -2.3996
16 6 4.1572 0.7592 -3.5700
17 6 5.2785 -0.2119 -3.6068
18 6 5.6197 -0.9296 -2.4622
19 6 6.6602 -1.8355 -2.5035
20 6 7.3708 -2.0235 -3.6753
21 6 7.0397 -1.3099 -4.8130
22 6 5.9978 -0.4052 -4.7844
23 6 3.8043 1.4914 -4.7088
24 6 2.7546 2.3840 -4.6361
25 17 2.3087 3.2968 -6.0439
26 7 2.0805 2.5499 -3.5122
27 1 -0.3633 -1.0238 0.0887
28 1 -0.3633 0.5888 0.8424
29 1 -0.3633 0.4352 -0.9310
30 1 1.8934 -0.5138 -0.8900
31 1 1.8933 -0.5138 0.8901
32 1 3.0795 0.4293 1.9185
33 1 0.8751 2.6844 -1.2683
34 1 3.6684 0.4185 -1.4997
35 1 5.0687 -0.7801 -1.5455
36 1 6.9229 -2.3954 -1.6181
37 1 8.1869 -2.7304 -3.7021
38 1 7.5976 -1.4609 -5.7254
39 1 5.7398 0.1511 -5.6734
40 1 4.3463 1.3590 -5.6336
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001161049400.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:24:33
Heat of formation + Delta-G solvation = 44.579064 kcal
Electronic energy + Delta-G solvation = -23345.265711 eV
Core-core repulsion = 19957.040722 eV
Total energy + Delta-G solvation = -3388.224989 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 316.104 amu
Computer time = 0.66 seconds
Orbital eigenvalues (eV)
-40.28589 -38.85541 -36.94974 -36.20593 -33.80288 -32.84629 -31.21620 -30.95594
-29.55784 -28.97559 -26.10097 -24.45775 -23.71476 -23.18201 -21.72277 -21.10377
-19.79080 -17.85482 -17.54192 -16.58157 -16.15976 -15.58551 -15.07047 -14.76756
-14.54264 -14.32776 -13.95566 -13.77032 -13.49141 -13.36888 -13.17239 -12.97087
-12.90674 -12.35531 -11.98322 -11.78695 -11.39619 -11.36008 -11.10781 -10.92455
-10.86566 -10.77097 -10.39926 -10.25056 -10.21659 -10.05432 -9.34660 -9.31638
-9.02189 -8.82970 -8.50992 -8.35073 -7.15049 -6.58370 -4.33517 0.66404
1.33477 1.47263 1.96890 2.05919 3.33628 3.34197 3.52825 3.71016
3.86073 4.19851 4.37218 4.47053 4.78011 4.88165 5.00586 5.15257
5.20318 5.27387 5.34634 5.48729 5.49088 5.60554 5.79029 5.98178
5.99787 6.03482 6.08118 6.20915 6.23683 6.36622 6.43492 6.56787
6.64074 6.70496 6.81109 6.89018 6.95578 7.11416 7.22093 7.53018
7.61628 8.11672 8.30656 8.57399 8.60944 9.35887 10.78321
Molecular weight = 316.10amu
Principal moments of inertia in cm(-1)
A = 0.010745 B = 0.004375 C = 0.003311
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2605.315827 B = 6398.453004 C = 8455.737250
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.129 4.129
2 C -0.138 4.138
3 C 0.264 3.736
4 H 0.033 0.967
5 C -0.605 4.605
6 H 0.058 0.942
7 C 0.031 3.969
8 N -0.902 5.902
9 Si 1.069 2.931
10 H -0.281 1.281
11 H -0.287 1.287
12 H -0.286 1.286
13 N -0.685 5.685
14 C 0.436 3.564
15 C -0.228 4.228
16 C 0.045 3.955
17 C -0.046 4.046
18 C -0.097 4.097
19 C -0.119 4.119
20 C -0.116 4.116
21 C -0.124 4.124
22 C -0.102 4.102
23 C -0.231 4.231
24 C 0.235 3.765
25 Cl -0.050 7.050
26 N -0.556 5.556
27 H 0.028 0.972
28 H 0.070 0.930
29 H 0.035 0.965
30 H 0.031 0.969
31 H 0.071 0.929
32 H 0.271 0.729
33 H 0.401 0.599
34 H 0.143 0.857
35 H 0.130 0.870
36 H 0.126 0.874
37 H 0.121 0.879
38 H 0.123 0.877
39 H 0.127 0.873
40 H 0.135 0.865
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.068 -4.250 -13.385 15.299
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.186 4.186
2 C -0.177 4.177
3 C 0.161 3.839
4 H 0.050 0.950
5 C -0.643 4.643
6 H 0.076 0.924
7 C -0.175 4.175
8 N -0.537 5.537
9 Si 0.896 3.104
10 H -0.206 1.206
11 H -0.213 1.213
12 H -0.212 1.212
13 N -0.310 5.310
14 C 0.197 3.803
15 C -0.254 4.254
16 C 0.038 3.962
17 C -0.046 4.046
18 C -0.115 4.115
19 C -0.137 4.137
20 C -0.135 4.135
21 C -0.142 4.142
22 C -0.120 4.120
23 C -0.257 4.257
24 C 0.069 3.931
25 Cl -0.021 7.021
26 N -0.278 5.278
27 H 0.047 0.953
28 H 0.089 0.911
29 H 0.054 0.946
30 H 0.050 0.950
31 H 0.090 0.910
32 H 0.083 0.917
33 H 0.236 0.764
34 H 0.160 0.840
35 H 0.148 0.852
36 H 0.144 0.856
37 H 0.140 0.860
38 H 0.141 0.859
39 H 0.145 0.855
40 H 0.153 0.847
Dipole moment (debyes) X Y Z Total
from point charges 5.350 -3.613 -11.557 13.238
hybrid contribution 0.272 -0.274 -1.886 1.925
sum 5.622 -3.886 -13.443 15.081
Atomic orbital electron populations
1.21544 0.96345 0.99178 1.01568 1.22075 0.96757 0.99096 0.99807
1.18983 0.95511 0.89379 0.80077 0.94984 1.21860 1.31662 1.19332
0.91451 0.92387 1.25725 0.95219 0.96634 0.99893 1.70839 1.23490
1.23596 1.35795 0.83527 0.75649 0.75633 0.75567 1.20601 1.21329
1.21199 1.45341 1.30296 1.49602 1.05780 1.18164 0.88373 0.87938
0.85825 1.21628 0.99838 1.04171 0.99715 1.18677 0.92502 0.92740
0.92329 1.18676 0.95180 0.96512 0.94239 1.21398 0.96945 0.95182
0.98011 1.21142 0.95865 0.98418 0.98312 1.21240 0.99621 0.99486
0.93118 1.21071 0.97679 0.96941 0.98507 1.21259 0.95316 0.98078
0.97385 1.21221 1.01905 1.02507 1.00028 1.20877 0.91966 0.92225
0.88026 1.98369 1.92982 1.74051 1.36727 1.66300 1.33221 1.29612
0.98681 0.95296 0.91130 0.94597 0.95030 0.91020 0.91683 0.76430
0.83958 0.85208 0.85615 0.86050 0.85882 0.85526 0.84684
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.58 9.53 37.16 0.35 -2.23 16
2 C -0.14 -2.90 5.23 -26.73 -0.14 -3.04 16
3 C 0.26 5.91 1.58 -69.08 -0.11 5.80 16
4 H 0.03 0.78 6.47 -51.93 -0.34 0.45 16
5 C -0.60 -15.05 7.08 -34.44 -0.24 -15.30 16
6 H 0.06 1.45 7.68 -52.48 -0.40 1.05 16
7 C 0.03 0.80 5.28 -17.82 -0.09 0.71 16
8 N -0.90 -24.41 13.20 55.43 0.73 -23.68 16
9 Si 1.07 23.24 29.91 -169.99 -5.08 18.16 16
10 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16
11 H -0.29 -6.08 7.11 56.52 0.40 -5.68 16
12 H -0.29 -5.96 7.11 56.52 0.40 -5.56 16
13 N -0.69 -14.08 4.82 -55.10 -0.27 -14.35 16
14 C 0.44 8.52 7.58 -155.03 -1.18 7.34 16
15 C -0.23 -4.09 7.84 -38.88 -0.30 -4.40 16
16 C 0.05 0.71 5.91 -104.63 -0.62 0.10 16
17 C -0.05 -0.64 5.88 -104.90 -0.62 -1.25 16
18 C -0.10 -1.31 9.45 -39.25 -0.37 -1.68 16
19 C -0.12 -1.35 10.03 -39.63 -0.40 -1.75 16
20 C -0.12 -1.17 10.04 -39.52 -0.40 -1.56 16
21 C -0.12 -1.24 10.03 -39.63 -0.40 -1.64 16
22 C -0.10 -1.18 9.45 -39.25 -0.37 -1.56 16
23 C -0.23 -3.47 9.25 -39.05 -0.36 -3.83 16
24 C 0.23 3.90 7.26 -17.53 -0.13 3.78 16
25 Cl -0.05 -0.70 29.10 -51.86 -1.51 -2.21 16
26 N -0.56 -10.58 10.36 -9.63 -0.10 -10.68 16
27 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16
28 H 0.07 1.52 6.89 -51.93 -0.36 1.17 16
29 H 0.03 0.69 7.89 -51.93 -0.41 0.28 16
30 H 0.03 0.62 6.74 -51.93 -0.35 0.27 16
31 H 0.07 1.62 6.18 -51.93 -0.32 1.30 16
32 H 0.27 7.19 5.63 -40.82 -0.23 6.96 16
33 H 0.40 8.17 8.58 -40.82 -0.35 7.82 16
34 H 0.14 2.57 3.98 -52.49 -0.21 2.36 16
35 H 0.13 1.79 6.29 -52.49 -0.33 1.46 16
36 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16
37 H 0.12 0.91 8.06 -52.48 -0.42 0.49 16
38 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16
39 H 0.13 1.24 6.29 -52.49 -0.33 0.91 16
40 H 0.14 1.64 6.33 -52.48 -0.33 1.30 16
LS Contribution 341.41 15.07 5.15 5.15
Total: -1.00 -27.10 341.41 -10.90 -38.00
By element:
Atomic # 1 Polarization: 14.58 SS G_CDS: -4.45 Total: 10.13 kcal
Atomic # 6 Polarization: -15.15 SS G_CDS: -5.37 Total: -20.52 kcal
Atomic # 7 Polarization: -49.08 SS G_CDS: 0.37 Total: -48.71 kcal
Atomic # 14 Polarization: 23.24 SS G_CDS: -5.08 Total: 18.16 kcal
Atomic # 17 Polarization: -0.70 SS G_CDS: -1.51 Total: -2.21 kcal
Total LS contribution 5.15 Total: 5.15 kcal
Total: -27.10 -10.90 -38.00 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001161049400.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 82.579 kcal
(2) G-P(sol) polarization free energy of solvation -27.103 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.476 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.897 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.000 kcal
(6) G-S(sol) free energy of system = (1) + (5) 44.579 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.66 seconds