Wall clock time and date at job start Tue Mar 31 2020 11:24:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53002 * 109.47153 * 2 1 4 4 H 1.08998 * 109.46998 * 175.20617 * 3 2 1 5 5 C 1.50704 * 109.46993 * 55.20514 * 3 2 1 6 6 H 1.08007 * 119.99667 * 245.74978 * 5 3 2 7 7 C 1.37870 * 120.00132 * 65.75650 * 5 3 2 8 8 N 1.31516 * 120.00199 * 5.53260 * 7 5 3 9 9 Si 1.86798 * 120.00053 * 185.53612 * 7 5 3 10 10 H 1.48499 * 109.47550 * 179.97438 * 9 7 5 11 11 H 1.48494 * 109.47297 * 299.99938 * 9 7 5 12 12 H 1.48506 * 109.47384 * 59.99824 * 9 7 5 13 13 N 1.46503 * 109.47086 * 295.20658 * 3 2 1 14 14 C 1.39032 * 119.99657 * 279.63040 * 13 3 2 15 15 C 1.38900 * 119.64069 * 4.94653 * 14 13 3 16 16 C 1.39475 * 118.98422 * 180.02562 * 15 14 13 17 17 C 1.48385 * 120.85631 * 180.02562 * 16 15 14 18 18 C 1.39340 * 120.11796 * 359.72809 * 17 16 15 19 19 C 1.38026 * 119.87163 * 179.74283 * 18 17 16 20 20 C 1.38316 * 120.12247 * 0.52793 * 19 18 17 21 21 C 1.38325 * 120.24641 * 359.72298 * 20 19 18 22 22 C 1.38020 * 120.12005 * 0.02562 * 21 20 19 23 23 C 1.39916 * 118.28509 * 359.97438 * 16 15 14 24 24 C 1.37977 * 119.17880 * 359.97438 * 23 16 15 25 25 Cl 1.73606 * 119.52534 * 180.02562 * 24 23 16 26 26 N 1.32109 * 120.94808 * 359.73465 * 24 23 16 27 27 H 1.08996 * 109.47220 * 184.94984 * 1 2 3 28 28 H 1.09004 * 109.46955 * 304.95111 * 1 2 3 29 29 H 1.09000 * 109.47134 * 64.94351 * 1 2 3 30 30 H 1.08999 * 109.47106 * 239.99921 * 2 1 3 31 31 H 1.09001 * 109.46581 * 119.99612 * 2 1 3 32 32 H 0.97003 * 119.99670 * 355.16719 * 8 7 5 33 33 H 0.96995 * 119.99900 * 99.63148 * 13 3 2 34 34 H 1.07999 * 120.50945 * 0.02562 * 15 14 13 35 35 H 1.07994 * 120.06525 * 359.97438 * 18 17 16 36 36 H 1.08000 * 119.93644 * 180.25710 * 19 18 17 37 37 H 1.08003 * 119.88273 * 179.74567 * 20 19 18 38 38 H 1.08000 * 119.94192 * 180.02562 * 21 20 19 39 39 H 1.07998 * 120.06261 * 180.02562 * 22 21 20 40 40 H 1.08003 * 120.40692 * 180.02562 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1267 1.4437 0.0859 5 6 1.4431 2.1864 1.1668 6 1 0.7585 3.0035 0.9930 7 6 1.7709 1.8239 2.4560 8 7 2.6858 0.9031 2.6678 9 14 0.9156 2.6406 3.9019 10 1 1.4429 2.0782 5.1711 11 1 1.1689 4.1033 3.8652 12 1 -0.5457 2.3891 3.8192 13 7 1.6483 2.0990 -1.2497 14 6 2.3848 1.8829 -2.4090 15 6 3.4270 0.9648 -2.3996 16 6 4.1572 0.7592 -3.5700 17 6 5.2785 -0.2119 -3.6068 18 6 5.6197 -0.9296 -2.4622 19 6 6.6602 -1.8355 -2.5035 20 6 7.3708 -2.0235 -3.6753 21 6 7.0397 -1.3099 -4.8130 22 6 5.9978 -0.4052 -4.7844 23 6 3.8043 1.4914 -4.7088 24 6 2.7546 2.3840 -4.6361 25 17 2.3087 3.2968 -6.0439 26 7 2.0805 2.5499 -3.5122 27 1 -0.3633 -1.0238 0.0887 28 1 -0.3633 0.5888 0.8424 29 1 -0.3633 0.4352 -0.9310 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8901 32 1 3.0795 0.4293 1.9185 33 1 0.8751 2.6844 -1.2683 34 1 3.6684 0.4185 -1.4997 35 1 5.0687 -0.7801 -1.5455 36 1 6.9229 -2.3954 -1.6181 37 1 8.1869 -2.7304 -3.7021 38 1 7.5976 -1.4609 -5.7254 39 1 5.7398 0.1511 -5.6734 40 1 4.3463 1.3590 -5.6336 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161049400.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:33 Heat of formation + Delta-G solvation = 44.579064 kcal Electronic energy + Delta-G solvation = -23345.265711 eV Core-core repulsion = 19957.040722 eV Total energy + Delta-G solvation = -3388.224989 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 316.104 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.28589 -38.85541 -36.94974 -36.20593 -33.80288 -32.84629 -31.21620 -30.95594 -29.55784 -28.97559 -26.10097 -24.45775 -23.71476 -23.18201 -21.72277 -21.10377 -19.79080 -17.85482 -17.54192 -16.58157 -16.15976 -15.58551 -15.07047 -14.76756 -14.54264 -14.32776 -13.95566 -13.77032 -13.49141 -13.36888 -13.17239 -12.97087 -12.90674 -12.35531 -11.98322 -11.78695 -11.39619 -11.36008 -11.10781 -10.92455 -10.86566 -10.77097 -10.39926 -10.25056 -10.21659 -10.05432 -9.34660 -9.31638 -9.02189 -8.82970 -8.50992 -8.35073 -7.15049 -6.58370 -4.33517 0.66404 1.33477 1.47263 1.96890 2.05919 3.33628 3.34197 3.52825 3.71016 3.86073 4.19851 4.37218 4.47053 4.78011 4.88165 5.00586 5.15257 5.20318 5.27387 5.34634 5.48729 5.49088 5.60554 5.79029 5.98178 5.99787 6.03482 6.08118 6.20915 6.23683 6.36622 6.43492 6.56787 6.64074 6.70496 6.81109 6.89018 6.95578 7.11416 7.22093 7.53018 7.61628 8.11672 8.30656 8.57399 8.60944 9.35887 10.78321 Molecular weight = 316.10amu Principal moments of inertia in cm(-1) A = 0.010745 B = 0.004375 C = 0.003311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2605.315827 B = 6398.453004 C = 8455.737250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.138 4.138 3 C 0.264 3.736 4 H 0.033 0.967 5 C -0.605 4.605 6 H 0.058 0.942 7 C 0.031 3.969 8 N -0.902 5.902 9 Si 1.069 2.931 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.286 1.286 13 N -0.685 5.685 14 C 0.436 3.564 15 C -0.228 4.228 16 C 0.045 3.955 17 C -0.046 4.046 18 C -0.097 4.097 19 C -0.119 4.119 20 C -0.116 4.116 21 C -0.124 4.124 22 C -0.102 4.102 23 C -0.231 4.231 24 C 0.235 3.765 25 Cl -0.050 7.050 26 N -0.556 5.556 27 H 0.028 0.972 28 H 0.070 0.930 29 H 0.035 0.965 30 H 0.031 0.969 31 H 0.071 0.929 32 H 0.271 0.729 33 H 0.401 0.599 34 H 0.143 0.857 35 H 0.130 0.870 36 H 0.126 0.874 37 H 0.121 0.879 38 H 0.123 0.877 39 H 0.127 0.873 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.068 -4.250 -13.385 15.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.177 4.177 3 C 0.161 3.839 4 H 0.050 0.950 5 C -0.643 4.643 6 H 0.076 0.924 7 C -0.175 4.175 8 N -0.537 5.537 9 Si 0.896 3.104 10 H -0.206 1.206 11 H -0.213 1.213 12 H -0.212 1.212 13 N -0.310 5.310 14 C 0.197 3.803 15 C -0.254 4.254 16 C 0.038 3.962 17 C -0.046 4.046 18 C -0.115 4.115 19 C -0.137 4.137 20 C -0.135 4.135 21 C -0.142 4.142 22 C -0.120 4.120 23 C -0.257 4.257 24 C 0.069 3.931 25 Cl -0.021 7.021 26 N -0.278 5.278 27 H 0.047 0.953 28 H 0.089 0.911 29 H 0.054 0.946 30 H 0.050 0.950 31 H 0.090 0.910 32 H 0.083 0.917 33 H 0.236 0.764 34 H 0.160 0.840 35 H 0.148 0.852 36 H 0.144 0.856 37 H 0.140 0.860 38 H 0.141 0.859 39 H 0.145 0.855 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 5.350 -3.613 -11.557 13.238 hybrid contribution 0.272 -0.274 -1.886 1.925 sum 5.622 -3.886 -13.443 15.081 Atomic orbital electron populations 1.21544 0.96345 0.99178 1.01568 1.22075 0.96757 0.99096 0.99807 1.18983 0.95511 0.89379 0.80077 0.94984 1.21860 1.31662 1.19332 0.91451 0.92387 1.25725 0.95219 0.96634 0.99893 1.70839 1.23490 1.23596 1.35795 0.83527 0.75649 0.75633 0.75567 1.20601 1.21329 1.21199 1.45341 1.30296 1.49602 1.05780 1.18164 0.88373 0.87938 0.85825 1.21628 0.99838 1.04171 0.99715 1.18677 0.92502 0.92740 0.92329 1.18676 0.95180 0.96512 0.94239 1.21398 0.96945 0.95182 0.98011 1.21142 0.95865 0.98418 0.98312 1.21240 0.99621 0.99486 0.93118 1.21071 0.97679 0.96941 0.98507 1.21259 0.95316 0.98078 0.97385 1.21221 1.01905 1.02507 1.00028 1.20877 0.91966 0.92225 0.88026 1.98369 1.92982 1.74051 1.36727 1.66300 1.33221 1.29612 0.98681 0.95296 0.91130 0.94597 0.95030 0.91020 0.91683 0.76430 0.83958 0.85208 0.85615 0.86050 0.85882 0.85526 0.84684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.58 9.53 37.16 0.35 -2.23 16 2 C -0.14 -2.90 5.23 -26.73 -0.14 -3.04 16 3 C 0.26 5.91 1.58 -69.08 -0.11 5.80 16 4 H 0.03 0.78 6.47 -51.93 -0.34 0.45 16 5 C -0.60 -15.05 7.08 -34.44 -0.24 -15.30 16 6 H 0.06 1.45 7.68 -52.48 -0.40 1.05 16 7 C 0.03 0.80 5.28 -17.82 -0.09 0.71 16 8 N -0.90 -24.41 13.20 55.43 0.73 -23.68 16 9 Si 1.07 23.24 29.91 -169.99 -5.08 18.16 16 10 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 11 H -0.29 -6.08 7.11 56.52 0.40 -5.68 16 12 H -0.29 -5.96 7.11 56.52 0.40 -5.56 16 13 N -0.69 -14.08 4.82 -55.10 -0.27 -14.35 16 14 C 0.44 8.52 7.58 -155.03 -1.18 7.34 16 15 C -0.23 -4.09 7.84 -38.88 -0.30 -4.40 16 16 C 0.05 0.71 5.91 -104.63 -0.62 0.10 16 17 C -0.05 -0.64 5.88 -104.90 -0.62 -1.25 16 18 C -0.10 -1.31 9.45 -39.25 -0.37 -1.68 16 19 C -0.12 -1.35 10.03 -39.63 -0.40 -1.75 16 20 C -0.12 -1.17 10.04 -39.52 -0.40 -1.56 16 21 C -0.12 -1.24 10.03 -39.63 -0.40 -1.64 16 22 C -0.10 -1.18 9.45 -39.25 -0.37 -1.56 16 23 C -0.23 -3.47 9.25 -39.05 -0.36 -3.83 16 24 C 0.23 3.90 7.26 -17.53 -0.13 3.78 16 25 Cl -0.05 -0.70 29.10 -51.86 -1.51 -2.21 16 26 N -0.56 -10.58 10.36 -9.63 -0.10 -10.68 16 27 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.07 1.52 6.89 -51.93 -0.36 1.17 16 29 H 0.03 0.69 7.89 -51.93 -0.41 0.28 16 30 H 0.03 0.62 6.74 -51.93 -0.35 0.27 16 31 H 0.07 1.62 6.18 -51.93 -0.32 1.30 16 32 H 0.27 7.19 5.63 -40.82 -0.23 6.96 16 33 H 0.40 8.17 8.58 -40.82 -0.35 7.82 16 34 H 0.14 2.57 3.98 -52.49 -0.21 2.36 16 35 H 0.13 1.79 6.29 -52.49 -0.33 1.46 16 36 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 37 H 0.12 0.91 8.06 -52.48 -0.42 0.49 16 38 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 39 H 0.13 1.24 6.29 -52.49 -0.33 0.91 16 40 H 0.14 1.64 6.33 -52.48 -0.33 1.30 16 LS Contribution 341.41 15.07 5.15 5.15 Total: -1.00 -27.10 341.41 -10.90 -38.00 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: -4.45 Total: 10.13 kcal Atomic # 6 Polarization: -15.15 SS G_CDS: -5.37 Total: -20.52 kcal Atomic # 7 Polarization: -49.08 SS G_CDS: 0.37 Total: -48.71 kcal Atomic # 14 Polarization: 23.24 SS G_CDS: -5.08 Total: 18.16 kcal Atomic # 17 Polarization: -0.70 SS G_CDS: -1.51 Total: -2.21 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -27.10 -10.90 -38.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161049400.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.579 kcal (2) G-P(sol) polarization free energy of solvation -27.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.000 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds