Wall clock time and date at job start Tue Mar 31 2020 11:24:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53002 * 109.47153 * 2 1 4 4 H 1.08998 * 109.46998 * 175.20617 * 3 2 1 5 5 C 1.50704 * 109.46993 * 55.20514 * 3 2 1 6 6 H 1.08007 * 119.99667 * 245.74978 * 5 3 2 7 7 C 1.37870 * 120.00132 * 65.75650 * 5 3 2 8 8 N 1.31516 * 120.00199 * 5.53260 * 7 5 3 9 9 Si 1.86798 * 120.00053 * 185.53612 * 7 5 3 10 10 H 1.48499 * 109.47550 * 179.97438 * 9 7 5 11 11 H 1.48494 * 109.47297 * 299.99938 * 9 7 5 12 12 H 1.48506 * 109.47384 * 59.99824 * 9 7 5 13 13 N 1.46503 * 109.47086 * 295.20658 * 3 2 1 14 14 C 1.39032 * 119.99657 * 279.63040 * 13 3 2 15 15 C 1.38900 * 119.64069 * 4.94653 * 14 13 3 16 16 C 1.39475 * 118.98422 * 180.02562 * 15 14 13 17 17 C 1.48385 * 120.85631 * 180.02562 * 16 15 14 18 18 C 1.39340 * 120.11796 * 359.72809 * 17 16 15 19 19 C 1.38026 * 119.87163 * 179.74283 * 18 17 16 20 20 C 1.38316 * 120.12247 * 0.52793 * 19 18 17 21 21 C 1.38325 * 120.24641 * 359.72298 * 20 19 18 22 22 C 1.38020 * 120.12005 * 0.02562 * 21 20 19 23 23 C 1.39916 * 118.28509 * 359.97438 * 16 15 14 24 24 C 1.37977 * 119.17880 * 359.97438 * 23 16 15 25 25 Cl 1.73606 * 119.52534 * 180.02562 * 24 23 16 26 26 N 1.32109 * 120.94808 * 359.73465 * 24 23 16 27 27 H 1.08996 * 109.47220 * 184.94984 * 1 2 3 28 28 H 1.09004 * 109.46955 * 304.95111 * 1 2 3 29 29 H 1.09000 * 109.47134 * 64.94351 * 1 2 3 30 30 H 1.08999 * 109.47106 * 239.99921 * 2 1 3 31 31 H 1.09001 * 109.46581 * 119.99612 * 2 1 3 32 32 H 0.97003 * 119.99670 * 355.16719 * 8 7 5 33 33 H 0.96995 * 119.99900 * 99.63148 * 13 3 2 34 34 H 1.07999 * 120.50945 * 0.02562 * 15 14 13 35 35 H 1.07994 * 120.06525 * 359.97438 * 18 17 16 36 36 H 1.08000 * 119.93644 * 180.25710 * 19 18 17 37 37 H 1.08003 * 119.88273 * 179.74567 * 20 19 18 38 38 H 1.08000 * 119.94192 * 180.02562 * 21 20 19 39 39 H 1.07998 * 120.06261 * 180.02562 * 22 21 20 40 40 H 1.08003 * 120.40692 * 180.02562 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1267 1.4437 0.0859 5 6 1.4431 2.1864 1.1668 6 1 0.7585 3.0035 0.9930 7 6 1.7709 1.8239 2.4560 8 7 2.6858 0.9031 2.6678 9 14 0.9156 2.6406 3.9019 10 1 1.4429 2.0782 5.1711 11 1 1.1689 4.1033 3.8652 12 1 -0.5457 2.3891 3.8192 13 7 1.6483 2.0990 -1.2497 14 6 2.3848 1.8829 -2.4090 15 6 3.4270 0.9648 -2.3996 16 6 4.1572 0.7592 -3.5700 17 6 5.2785 -0.2119 -3.6068 18 6 5.6197 -0.9296 -2.4622 19 6 6.6602 -1.8355 -2.5035 20 6 7.3708 -2.0235 -3.6753 21 6 7.0397 -1.3099 -4.8130 22 6 5.9978 -0.4052 -4.7844 23 6 3.8043 1.4914 -4.7088 24 6 2.7546 2.3840 -4.6361 25 17 2.3087 3.2968 -6.0439 26 7 2.0805 2.5499 -3.5122 27 1 -0.3633 -1.0238 0.0887 28 1 -0.3633 0.5888 0.8424 29 1 -0.3633 0.4352 -0.9310 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8901 32 1 3.0795 0.4293 1.9185 33 1 0.8751 2.6844 -1.2683 34 1 3.6684 0.4185 -1.4997 35 1 5.0687 -0.7801 -1.5455 36 1 6.9229 -2.3954 -1.6181 37 1 8.1869 -2.7304 -3.7021 38 1 7.5976 -1.4609 -5.7254 39 1 5.7398 0.1511 -5.6734 40 1 4.3463 1.3590 -5.6336 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161049400.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:32 Heat of formation + Delta-G solvation = 32.632810 kcal Electronic energy + Delta-G solvation = -23345.783739 eV Core-core repulsion = 19957.040722 eV Total energy + Delta-G solvation = -3388.743018 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 316.104 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.57700 -39.86616 -38.49216 -37.53851 -35.19124 -34.36813 -32.77121 -32.03044 -30.62922 -30.39242 -27.85758 -26.09621 -25.03783 -24.39120 -22.84854 -22.31145 -21.42191 -19.41028 -18.89139 -17.95593 -17.42966 -16.75230 -16.34308 -15.97611 -15.89534 -15.65656 -15.53136 -15.29495 -15.00072 -14.61624 -14.38504 -14.14642 -14.08877 -13.92196 -13.45947 -13.12615 -12.97798 -12.64015 -12.37896 -12.22190 -12.17942 -12.15521 -11.96585 -11.85211 -11.74164 -11.53296 -10.84190 -10.73586 -10.60545 -10.43839 -9.89828 -9.39666 -8.66984 -8.61259 -6.37343 -0.45262 0.14914 0.46079 0.69942 0.93542 1.56525 1.61475 1.80830 2.32117 2.58383 2.61441 3.02564 3.17444 3.33136 3.84921 3.89258 3.96745 4.05379 4.13071 4.25893 4.27206 4.35376 4.42695 4.52365 4.54627 4.57894 4.65423 4.87106 4.99459 5.04517 5.08779 5.12988 5.19121 5.32406 5.40022 5.51207 5.53647 5.57157 5.65056 5.78660 5.87107 6.03374 6.26104 6.49531 6.77053 7.02848 7.40111 8.75223 Molecular weight = 316.10amu Principal moments of inertia in cm(-1) A = 0.010745 B = 0.004375 C = 0.003311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2605.315827 B = 6398.453004 C = 8455.737250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.128 4.128 3 C 0.276 3.724 4 H 0.005 0.995 5 C -0.609 4.609 6 H 0.053 0.947 7 C -0.011 4.011 8 N -0.927 5.927 9 Si 1.109 2.891 10 H -0.285 1.285 11 H -0.277 1.277 12 H -0.270 1.270 13 N -0.695 5.695 14 C 0.419 3.581 15 C -0.247 4.247 16 C 0.052 3.948 17 C -0.074 4.074 18 C -0.118 4.118 19 C -0.129 4.129 20 C -0.108 4.108 21 C -0.120 4.120 22 C -0.101 4.101 23 C -0.217 4.217 24 C 0.220 3.780 25 Cl -0.026 7.026 26 N -0.575 5.575 27 H 0.048 0.952 28 H 0.052 0.948 29 H 0.041 0.959 30 H 0.041 0.959 31 H 0.051 0.949 32 H 0.264 0.736 33 H 0.398 0.602 34 H 0.131 0.869 35 H 0.110 0.890 36 H 0.139 0.861 37 H 0.154 0.846 38 H 0.158 0.842 39 H 0.147 0.853 40 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.208 -4.931 -15.754 18.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.167 4.167 3 C 0.172 3.828 4 H 0.023 0.977 5 C -0.647 4.647 6 H 0.071 0.929 7 C -0.212 4.212 8 N -0.564 5.564 9 Si 0.932 3.068 10 H -0.211 1.211 11 H -0.203 1.203 12 H -0.195 1.195 13 N -0.322 5.322 14 C 0.182 3.818 15 C -0.272 4.272 16 C 0.045 3.955 17 C -0.074 4.074 18 C -0.136 4.136 19 C -0.147 4.147 20 C -0.126 4.126 21 C -0.138 4.138 22 C -0.119 4.119 23 C -0.242 4.242 24 C 0.055 3.945 25 Cl 0.003 6.997 26 N -0.297 5.297 27 H 0.067 0.933 28 H 0.071 0.929 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.233 0.767 34 H 0.148 0.852 35 H 0.128 0.872 36 H 0.157 0.843 37 H 0.171 0.829 38 H 0.176 0.824 39 H 0.165 0.835 40 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 6.496 -4.289 -13.982 16.003 hybrid contribution 0.070 -0.108 -1.354 1.360 sum 6.566 -4.397 -15.336 17.252 Atomic orbital electron populations 1.21447 0.95242 1.00101 1.01011 1.21913 0.97556 0.98027 0.99200 1.18633 0.93661 0.90050 0.80475 0.97744 1.22114 1.31082 1.19084 0.92417 0.92885 1.26888 0.95170 0.96627 1.02470 1.70917 1.24960 1.24925 1.35582 0.83001 0.75645 0.75303 0.72854 1.21073 1.20303 1.19508 1.45041 1.30907 1.50462 1.05747 1.18238 0.88944 0.88860 0.85797 1.21620 1.00508 1.04608 1.00495 1.18970 0.92352 0.92579 0.91626 1.18711 0.95757 0.97276 0.95621 1.21415 0.98086 0.96581 0.97537 1.21382 0.95415 0.98050 0.99834 1.21671 0.99474 0.99153 0.92262 1.21507 0.96912 0.95593 0.99784 1.21537 0.95163 0.98347 0.96895 1.21589 1.00928 1.00782 1.00865 1.21266 0.92267 0.92850 0.88081 1.98372 1.92873 1.73515 1.34965 1.66271 1.34174 1.30068 0.99236 0.93345 0.92914 0.94025 0.94078 0.93006 0.92521 0.76709 0.85157 0.87220 0.84308 0.82868 0.82393 0.83544 0.81227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.89 9.53 71.98 0.69 -4.21 16 2 C -0.13 -5.59 5.23 30.60 0.16 -5.43 16 3 C 0.28 13.01 1.58 44.25 0.07 13.08 16 4 H 0.00 0.26 6.47 -2.39 -0.02 0.24 16 5 C -0.61 -31.34 7.08 25.60 0.18 -31.16 16 6 H 0.05 2.73 7.68 -2.91 -0.02 2.71 16 7 C -0.01 -0.57 5.28 84.65 0.45 -0.13 16 8 N -0.93 -51.98 13.20 21.44 0.28 -51.70 16 9 Si 1.11 47.38 29.91 68.60 2.05 49.43 16 10 H -0.29 -12.32 7.11 99.48 0.71 -11.61 16 11 H -0.28 -11.33 7.11 99.48 0.71 -10.62 16 12 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 13 N -0.69 -29.88 4.82 -328.23 -1.58 -31.46 16 14 C 0.42 16.94 7.58 132.98 1.01 17.95 16 15 C -0.25 -9.27 7.84 22.73 0.18 -9.09 16 16 C 0.05 1.65 5.91 -19.87 -0.12 1.54 16 17 C -0.07 -1.98 5.88 -20.04 -0.12 -2.10 16 18 C -0.12 -3.22 9.45 22.48 0.21 -3.01 16 19 C -0.13 -2.76 10.03 22.24 0.22 -2.54 16 20 C -0.11 -1.79 10.04 22.31 0.22 -1.56 16 21 C -0.12 -1.92 10.03 22.24 0.22 -1.69 16 22 C -0.10 -2.04 9.45 22.48 0.21 -1.83 16 23 C -0.22 -6.16 9.25 22.61 0.21 -5.95 16 24 C 0.22 7.11 7.26 84.59 0.61 7.73 16 25 Cl -0.03 -0.68 29.10 -2.72 -0.08 -0.76 16 26 N -0.58 -22.09 10.36 -184.38 -1.91 -24.00 16 27 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 28 H 0.05 2.31 6.89 -2.38 -0.02 2.29 16 29 H 0.04 1.61 7.89 -2.39 -0.02 1.59 16 30 H 0.04 1.69 6.74 -2.39 -0.02 1.67 16 31 H 0.05 2.46 6.18 -2.39 -0.01 2.45 16 32 H 0.26 14.75 5.63 -92.71 -0.52 14.23 16 33 H 0.40 16.96 8.58 -92.71 -0.80 16.16 16 34 H 0.13 5.13 3.98 -2.91 -0.01 5.12 16 35 H 0.11 3.33 6.29 -2.91 -0.02 3.31 16 36 H 0.14 2.49 8.06 -2.91 -0.02 2.47 16 37 H 0.15 1.57 8.06 -2.91 -0.02 1.55 16 38 H 0.16 1.44 8.06 -2.91 -0.02 1.42 16 39 H 0.15 2.26 6.29 -2.91 -0.02 2.25 16 40 H 0.17 3.51 6.33 -2.91 -0.02 3.49 16 Total: -1.00 -60.24 341.41 3.72 -56.52 By element: Atomic # 1 Polarization: 29.83 SS G_CDS: 0.54 Total: 30.37 kcal Atomic # 6 Polarization: -32.81 SS G_CDS: 4.41 Total: -28.40 kcal Atomic # 7 Polarization: -103.96 SS G_CDS: -3.21 Total: -107.17 kcal Atomic # 14 Polarization: 47.38 SS G_CDS: 2.05 Total: 49.43 kcal Atomic # 17 Polarization: -0.68 SS G_CDS: -0.08 Total: -0.76 kcal Total: -60.24 3.72 -56.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161049400.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.155 kcal (2) G-P(sol) polarization free energy of solvation -60.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.522 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds