Wall clock time and date at job start Tue Mar 31 2020 11:52:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35517 * 117.00138 * 2 1 4 4 C 1.39611 * 120.46963 * 180.02562 * 3 2 1 5 5 C 1.38406 * 118.51631 * 180.02562 * 4 3 2 6 6 N 1.32268 * 119.27199 * 359.97438 * 5 4 3 7 7 C 1.32660 * 120.89179 * 0.02562 * 6 5 4 8 8 C 1.47969 * 119.19175 * 179.97438 * 7 6 5 9 9 N 1.37533 * 120.00105 * 179.97438 * 8 7 6 10 10 N 1.31455 * 120.00227 * 0.02562 * 8 7 6 11 11 C 1.35152 * 120.00291 * 173.83970 * 10 8 7 12 12 C 1.39834 * 120.59862 * 309.61116 * 11 10 8 13 13 C 1.37684 * 120.08160 * 180.25962 * 12 11 10 14 14 C 1.38884 * 121.38362 * 359.77170 * 13 12 11 15 15 C 1.37475 * 121.24063 * 359.95706 * 14 13 12 16 16 F 1.35101 * 120.10299 * 179.97438 * 15 14 13 17 17 C 1.41196 * 119.79438 * 0.02562 * 15 14 13 18 18 C 1.40485 * 120.65002 * 179.97438 * 17 15 14 19 19 H 1.08006 * 119.99844 * 218.66393 * 18 17 15 20 20 C 1.40114 * 120.00276 * 38.67476 * 18 17 15 21 21 N 1.30782 * 120.00016 * 18.43881 * 20 18 17 22 22 Si 1.86804 * 120.00113 * 198.44455 * 20 18 17 23 23 H 1.48508 * 109.46766 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.47287 * 119.99227 * 22 20 18 25 25 H 1.48500 * 109.47326 * 239.99880 * 22 20 18 26 26 N 1.32571 * 120.46833 * 0.29668 * 3 2 1 27 27 H 1.08993 * 109.47265 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46459 * 299.99630 * 1 2 3 29 29 H 1.08998 * 109.47217 * 59.99245 * 1 2 3 30 30 H 1.08007 * 120.73815 * 0.02562 * 4 3 2 31 31 H 1.07997 * 120.36489 * 180.02562 * 5 4 3 32 32 H 0.97002 * 120.00070 * 172.11656 * 9 8 7 33 33 H 0.96996 * 120.00073 * 352.12936 * 9 8 7 34 34 H 1.07998 * 119.95961 * 359.97438 * 12 11 10 35 35 H 1.07999 * 119.31066 * 179.75070 * 13 12 11 36 36 H 1.08005 * 119.37811 * 179.97438 * 14 13 12 37 37 H 0.97004 * 119.99779 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0443 1.2075 0.0000 4 6 3.4378 1.2919 -0.0005 5 6 4.0238 2.5458 0.0000 6 7 3.2524 3.6202 0.0005 7 6 1.9304 3.5095 0.0010 8 6 1.1034 4.7365 0.0022 9 7 -0.2686 4.6410 0.0021 10 7 1.6800 5.9178 0.0022 11 6 0.9306 7.0356 -0.1224 12 6 -0.0097 7.1512 -1.1508 13 6 -0.7637 8.2970 -1.2710 14 6 -0.6177 9.3552 -0.3835 15 6 0.2859 9.2987 0.6510 16 9 0.4093 10.3419 1.5006 17 6 1.0854 8.1476 0.8221 18 6 2.0149 8.0709 1.8727 19 1 2.9762 7.6060 1.7103 20 6 1.6949 8.5972 3.1311 21 7 0.4464 8.8271 3.4455 22 14 3.0515 8.9706 4.3599 23 1 4.3672 8.6233 3.7652 24 1 3.0275 10.4160 4.6997 25 1 2.8383 8.1688 5.5915 26 7 1.3314 2.3252 0.0059 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 4.0450 0.3987 -0.0014 31 1 5.0991 2.6459 -0.0008 32 1 -0.8102 5.4374 0.1181 33 1 -0.6947 3.7774 -0.1136 34 1 -0.1415 6.3426 -1.8545 35 1 -1.4835 8.3746 -2.0724 36 1 -1.2258 10.2391 -0.5083 37 1 0.2249 9.1918 4.3167 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168428216.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:52:07 Heat of formation + Delta-G solvation = 27.826213 kcal Electronic energy + Delta-G solvation = -25458.202578 eV Core-core repulsion = 21537.374412 eV Total energy + Delta-G solvation = -3920.828166 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.108 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -46.98734 -41.14999 -38.73570 -38.05599 -35.73103 -33.69604 -33.30969 -31.84548 -31.39664 -29.60431 -28.27692 -27.53858 -25.60987 -24.59550 -23.65377 -21.79061 -21.00293 -19.62671 -18.21995 -17.85767 -17.41843 -16.53025 -16.32669 -16.22401 -15.46948 -15.36612 -14.91271 -14.70208 -14.57290 -14.28662 -14.22591 -13.95503 -13.71063 -13.09439 -12.73602 -12.34309 -12.21311 -11.94835 -11.70982 -11.34272 -11.33117 -11.10154 -10.95658 -10.81591 -10.68659 -10.26740 -10.23467 -9.81618 -9.30383 -9.20613 -9.13932 -9.09020 -7.87922 -7.27422 -6.91177 -6.67989 -4.33705 0.61873 1.21220 2.25688 2.69793 2.75377 3.09596 3.14628 3.17639 3.28000 3.58227 3.94859 3.97923 4.13752 4.53936 4.77280 4.86993 5.04052 5.08822 5.10912 5.24266 5.31238 5.37806 5.49418 5.84769 6.01816 6.06405 6.25786 6.45061 6.54699 6.76142 6.92382 7.07799 7.10002 7.35050 7.51186 7.54026 7.75759 7.84162 8.08147 8.13206 8.35775 8.44694 8.67218 8.77583 9.34129 10.10213 Molecular weight = 316.11amu Principal moments of inertia in cm(-1) A = 0.014520 B = 0.004145 C = 0.003551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1927.978181 B = 6753.907928 C = 7882.720440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.304 6.304 3 C 0.361 3.639 4 C -0.254 4.254 5 C 0.176 3.824 6 N -0.489 5.489 7 C 0.423 3.577 8 C 0.391 3.609 9 N -0.873 5.873 10 N -0.439 5.439 11 C -0.006 4.006 12 C -0.127 4.127 13 C -0.207 4.207 14 C -0.137 4.137 15 C 0.041 3.959 16 F -0.143 7.143 17 C 0.104 3.896 18 C -0.424 4.424 19 H 0.096 0.904 20 C 0.073 3.927 21 N -0.771 5.771 22 Si 0.912 3.088 23 H -0.256 1.256 24 H -0.270 1.270 25 H -0.275 1.275 26 N -0.569 5.569 27 H 0.098 0.902 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.151 0.849 31 H 0.178 0.822 32 H 0.408 0.592 33 H 0.391 0.609 34 H 0.098 0.902 35 H 0.096 0.904 36 H 0.099 0.901 37 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.478 -14.158 -4.252 14.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.208 6.208 3 C 0.173 3.827 4 C -0.278 4.278 5 C 0.011 3.989 6 N -0.206 5.206 7 C 0.156 3.844 8 C 0.119 3.881 9 N -0.428 5.428 10 N -0.161 5.161 11 C -0.111 4.111 12 C -0.148 4.148 13 C -0.227 4.227 14 C -0.157 4.157 15 C 0.020 3.980 16 F -0.122 7.122 17 C 0.098 3.902 18 C -0.452 4.452 19 H 0.114 0.886 20 C -0.148 4.148 21 N -0.394 5.394 22 Si 0.736 3.264 23 H -0.179 1.179 24 H -0.195 1.195 25 H -0.200 1.200 26 N -0.301 5.301 27 H 0.116 0.884 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.169 0.831 31 H 0.195 0.805 32 H 0.242 0.758 33 H 0.219 0.781 34 H 0.116 0.884 35 H 0.115 0.885 36 H 0.117 0.883 37 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 0.806 -13.165 -3.938 13.765 hybrid contribution -0.566 -0.468 0.670 0.994 sum 0.240 -13.633 -3.268 14.021 Atomic orbital electron populations 1.22953 0.76743 1.03207 1.03011 1.86232 1.23373 1.23969 1.87218 1.19951 0.89575 0.84572 0.88579 1.22039 0.92631 1.01357 1.11743 1.23228 1.01011 0.86145 0.88473 1.68530 1.04855 1.32773 1.14488 1.20257 0.87005 0.87784 0.89325 1.19164 0.81076 0.89254 0.98591 1.42925 1.04303 1.12972 1.82602 1.68620 1.34310 0.95387 1.17751 1.19093 0.98447 0.92217 1.01370 1.21049 0.96460 0.98098 0.99202 1.19845 1.04941 0.95483 1.02446 1.20508 0.99407 0.99160 0.96581 1.17553 1.03378 0.85884 0.91180 1.91332 1.95290 1.55488 1.70085 1.18364 0.91602 0.88076 0.92117 1.19446 1.01483 1.30929 0.93389 0.88588 1.25983 0.96290 0.92871 0.99680 1.69734 1.18853 1.29027 1.21801 0.86172 0.81954 0.78870 0.79398 1.17938 1.19544 1.20022 1.67847 1.41656 0.98564 1.21995 0.88400 0.91819 0.91914 0.83105 0.80483 0.75798 0.78111 0.88425 0.88534 0.88269 0.90469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.31 10.41 101.05 1.05 1.36 16 2 O -0.30 -3.46 10.49 -18.25 -0.19 -3.65 16 3 C 0.36 4.77 7.53 -16.72 -0.13 4.65 16 4 C -0.25 -2.86 10.13 -39.01 -0.40 -3.26 16 5 C 0.18 2.20 11.29 -17.30 -0.20 2.00 16 6 N -0.49 -8.51 10.09 -11.26 -0.11 -8.63 16 7 C 0.42 7.59 7.59 -156.94 -1.19 6.40 16 8 C 0.39 7.89 7.51 -153.58 -1.15 6.74 16 9 N -0.87 -15.14 8.12 32.61 0.26 -14.88 16 10 N -0.44 -10.34 9.65 -6.94 -0.07 -10.41 16 11 C -0.01 -0.15 5.65 -82.39 -0.47 -0.62 16 12 C -0.13 -2.77 7.71 -39.19 -0.30 -3.07 16 13 C -0.21 -4.42 9.97 -39.54 -0.39 -4.81 16 14 C -0.14 -3.16 9.94 -39.62 -0.39 -3.56 16 15 C 0.04 1.08 6.67 -38.74 -0.26 0.82 16 16 F -0.14 -3.89 14.46 2.25 0.03 -3.86 16 17 C 0.10 2.80 5.53 -104.51 -0.58 2.23 16 18 C -0.42 -11.63 8.54 -38.03 -0.32 -11.95 16 19 H 0.10 2.66 7.91 -52.48 -0.42 2.24 16 20 C 0.07 1.89 4.56 -17.29 -0.08 1.81 16 21 N -0.77 -20.50 11.23 55.56 0.62 -19.88 16 22 Si 0.91 19.62 29.60 -169.99 -5.03 14.59 16 23 H -0.26 -5.46 7.11 56.52 0.40 -5.06 16 24 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 25 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 26 N -0.57 -8.66 8.57 -11.24 -0.10 -8.76 16 27 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.58 8.11 -51.93 -0.42 0.16 16 29 H 0.06 0.54 8.12 -51.93 -0.42 0.12 16 30 H 0.15 1.21 8.06 -52.48 -0.42 0.78 16 31 H 0.18 1.51 8.06 -52.49 -0.42 1.09 16 32 H 0.41 7.57 6.39 -40.82 -0.26 7.31 16 33 H 0.39 5.66 8.22 -40.82 -0.34 5.32 16 34 H 0.10 1.95 7.57 -52.49 -0.40 1.55 16 35 H 0.10 1.77 8.06 -52.49 -0.42 1.35 16 36 H 0.10 2.06 8.06 -52.48 -0.42 1.64 16 37 H 0.28 6.91 8.30 -40.82 -0.34 6.57 16 LS Contribution 331.57 15.07 5.00 5.00 Total: -1.00 -31.28 331.57 -7.89 -39.17 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: -3.50 Total: 12.56 kcal Atomic # 6 Polarization: 3.55 SS G_CDS: -4.80 Total: -1.25 kcal Atomic # 7 Polarization: -63.17 SS G_CDS: 0.61 Total: -62.55 kcal Atomic # 8 Polarization: -3.46 SS G_CDS: -0.19 Total: -3.65 kcal Atomic # 9 Polarization: -3.89 SS G_CDS: 0.03 Total: -3.86 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -5.03 Total: 14.59 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -31.28 -7.89 -39.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168428216.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.995 kcal (2) G-P(sol) polarization free energy of solvation -31.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.169 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds