Wall clock time and date at job start Tue Mar 31 2020 11:52:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35517 * 117.00138 * 2 1 4 4 C 1.39611 * 120.46963 * 180.02562 * 3 2 1 5 5 C 1.38406 * 118.51631 * 180.02562 * 4 3 2 6 6 N 1.32268 * 119.27199 * 359.97438 * 5 4 3 7 7 C 1.32660 * 120.89179 * 0.02562 * 6 5 4 8 8 C 1.47969 * 119.19175 * 179.97438 * 7 6 5 9 9 N 1.37533 * 120.00105 * 179.97438 * 8 7 6 10 10 N 1.31455 * 120.00227 * 0.02562 * 8 7 6 11 11 C 1.35152 * 120.00291 * 173.83970 * 10 8 7 12 12 C 1.39834 * 120.59862 * 309.61116 * 11 10 8 13 13 C 1.37684 * 120.08160 * 180.25962 * 12 11 10 14 14 C 1.38884 * 121.38362 * 359.77170 * 13 12 11 15 15 C 1.37475 * 121.24063 * 359.95706 * 14 13 12 16 16 F 1.35101 * 120.10299 * 179.97438 * 15 14 13 17 17 C 1.41196 * 119.79438 * 0.02562 * 15 14 13 18 18 C 1.40485 * 120.65002 * 179.97438 * 17 15 14 19 19 H 1.08006 * 119.99844 * 218.66393 * 18 17 15 20 20 C 1.40114 * 120.00276 * 38.67476 * 18 17 15 21 21 N 1.30782 * 120.00016 * 18.43881 * 20 18 17 22 22 Si 1.86804 * 120.00113 * 198.44455 * 20 18 17 23 23 H 1.48508 * 109.46766 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.47287 * 119.99227 * 22 20 18 25 25 H 1.48500 * 109.47326 * 239.99880 * 22 20 18 26 26 N 1.32571 * 120.46833 * 0.29668 * 3 2 1 27 27 H 1.08993 * 109.47265 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46459 * 299.99630 * 1 2 3 29 29 H 1.08998 * 109.47217 * 59.99245 * 1 2 3 30 30 H 1.08007 * 120.73815 * 0.02562 * 4 3 2 31 31 H 1.07997 * 120.36489 * 180.02562 * 5 4 3 32 32 H 0.97002 * 120.00070 * 172.11656 * 9 8 7 33 33 H 0.96996 * 120.00073 * 352.12936 * 9 8 7 34 34 H 1.07998 * 119.95961 * 359.97438 * 12 11 10 35 35 H 1.07999 * 119.31066 * 179.75070 * 13 12 11 36 36 H 1.08005 * 119.37811 * 179.97438 * 14 13 12 37 37 H 0.97004 * 119.99779 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0443 1.2075 0.0000 4 6 3.4378 1.2919 -0.0005 5 6 4.0238 2.5458 0.0000 6 7 3.2524 3.6202 0.0005 7 6 1.9304 3.5095 0.0010 8 6 1.1034 4.7365 0.0022 9 7 -0.2686 4.6410 0.0021 10 7 1.6800 5.9178 0.0022 11 6 0.9306 7.0356 -0.1224 12 6 -0.0097 7.1512 -1.1508 13 6 -0.7637 8.2970 -1.2710 14 6 -0.6177 9.3552 -0.3835 15 6 0.2859 9.2987 0.6510 16 9 0.4093 10.3419 1.5006 17 6 1.0854 8.1476 0.8221 18 6 2.0149 8.0709 1.8727 19 1 2.9762 7.6060 1.7103 20 6 1.6949 8.5972 3.1311 21 7 0.4464 8.8271 3.4455 22 14 3.0515 8.9706 4.3599 23 1 4.3672 8.6233 3.7652 24 1 3.0275 10.4160 4.6997 25 1 2.8383 8.1688 5.5915 26 7 1.3314 2.3252 0.0059 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 4.0450 0.3987 -0.0014 31 1 5.0991 2.6459 -0.0008 32 1 -0.8102 5.4374 0.1181 33 1 -0.6947 3.7774 -0.1136 34 1 -0.1415 6.3426 -1.8545 35 1 -1.4835 8.3746 -2.0724 36 1 -1.2258 10.2391 -0.5083 37 1 0.2249 9.1918 4.3167 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168428216.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:52:06 Heat of formation + Delta-G solvation = 5.846732 kcal Electronic energy + Delta-G solvation = -25459.155680 eV Core-core repulsion = 21537.374412 eV Total energy + Delta-G solvation = -3921.781268 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.108 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -48.96582 -42.26313 -40.07766 -39.38928 -37.39474 -35.53941 -34.51074 -33.23081 -32.73066 -31.44320 -29.87316 -28.46837 -27.25274 -26.12300 -24.67439 -23.34083 -22.82392 -21.10638 -19.47887 -19.29644 -19.06946 -18.05805 -17.72748 -17.29767 -17.13904 -16.52307 -16.43309 -16.30506 -16.03757 -15.68246 -15.60198 -15.43644 -15.30247 -14.58056 -14.31082 -14.02220 -13.67457 -13.19305 -13.07944 -12.92022 -12.90892 -12.75542 -12.53263 -12.40905 -12.03648 -11.86674 -11.64542 -11.38992 -11.02787 -10.90365 -10.45471 -10.13709 -9.53091 -9.16032 -8.74689 -8.44472 -6.28425 -0.58941 0.15604 0.58318 0.87803 1.32526 1.42450 1.48520 1.74898 1.83307 2.19352 2.25573 2.67743 2.81181 2.88006 3.38531 3.63317 3.79542 3.93733 4.11451 4.28548 4.31530 4.38124 4.41426 4.44858 4.53595 4.70971 4.76577 4.80320 5.08992 5.19339 5.26082 5.56591 5.67451 5.72411 5.78843 5.94959 6.07741 6.20207 6.24606 6.46725 6.74734 6.83453 6.96440 7.03793 7.68778 8.28431 Molecular weight = 316.11amu Principal moments of inertia in cm(-1) A = 0.014520 B = 0.004145 C = 0.003551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1927.978181 B = 6753.907928 C = 7882.720440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.301 6.301 3 C 0.345 3.655 4 C -0.221 4.221 5 C 0.168 3.832 6 N -0.523 5.523 7 C 0.392 3.608 8 C 0.419 3.581 9 N -0.856 5.856 10 N -0.498 5.498 11 C 0.006 3.994 12 C -0.136 4.136 13 C -0.183 4.183 14 C -0.145 4.145 15 C 0.006 3.994 16 F -0.158 7.158 17 C 0.066 3.934 18 C -0.468 4.468 19 H 0.073 0.927 20 C 0.036 3.964 21 N -0.812 5.812 22 Si 0.974 3.026 23 H -0.259 1.259 24 H -0.264 1.264 25 H -0.263 1.263 26 N -0.565 5.565 27 H 0.131 0.869 28 H 0.056 0.944 29 H 0.062 0.938 30 H 0.194 0.806 31 H 0.217 0.783 32 H 0.405 0.595 33 H 0.407 0.593 34 H 0.120 0.880 35 H 0.138 0.862 36 H 0.121 0.879 37 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.508 -17.342 -5.443 18.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.205 6.205 3 C 0.158 3.842 4 C -0.244 4.244 5 C 0.006 3.994 6 N -0.242 5.242 7 C 0.124 3.876 8 C 0.145 3.855 9 N -0.410 5.410 10 N -0.222 5.222 11 C -0.098 4.098 12 C -0.157 4.157 13 C -0.203 4.203 14 C -0.165 4.165 15 C -0.015 4.015 16 F -0.137 7.137 17 C 0.061 3.939 18 C -0.497 4.497 19 H 0.091 0.909 20 C -0.181 4.181 21 N -0.437 5.437 22 Si 0.795 3.205 23 H -0.183 1.183 24 H -0.189 1.189 25 H -0.188 1.188 26 N -0.297 5.297 27 H 0.149 0.851 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.211 0.789 31 H 0.233 0.767 32 H 0.237 0.763 33 H 0.238 0.762 34 H 0.138 0.862 35 H 0.155 0.845 36 H 0.139 0.861 37 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 0.811 -16.399 -5.147 17.207 hybrid contribution -0.629 0.012 0.799 1.017 sum 0.182 -16.387 -4.348 16.955 Atomic orbital electron populations 1.23209 0.75317 1.05343 1.02625 1.86264 1.24758 1.22575 1.86909 1.20369 0.90631 0.84516 0.88700 1.22536 0.92164 1.02364 1.07357 1.23924 1.02385 0.85490 0.87633 1.68446 1.05090 1.35541 1.15081 1.19903 0.87344 0.87740 0.92626 1.19622 0.82060 0.89474 0.94375 1.42923 1.03586 1.13736 1.80760 1.68498 1.34853 0.96054 1.22785 1.19407 0.97646 0.92268 1.00447 1.21278 0.96358 0.99188 0.98878 1.20320 1.04144 0.93926 1.01927 1.20805 0.99109 1.00676 0.95903 1.17946 1.05341 0.85836 0.92398 1.91269 1.95568 1.56007 1.70848 1.18748 0.92777 0.89279 0.93109 1.19334 1.01395 1.34101 0.94901 0.90852 1.26665 0.98279 0.92324 1.00793 1.69768 1.20224 1.31159 1.22534 0.85268 0.78952 0.78934 0.77356 1.18255 1.18866 1.18781 1.67735 1.42034 0.98386 1.21577 0.85118 0.92506 0.91966 0.78903 0.76666 0.76257 0.76214 0.86234 0.84453 0.86076 0.90159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 10.41 113.37 1.18 1.60 16 2 O -0.30 -5.80 10.49 -88.20 -0.93 -6.73 16 3 C 0.35 8.08 7.53 84.91 0.64 8.71 16 4 C -0.22 -4.09 10.13 22.64 0.23 -3.86 16 5 C 0.17 3.72 11.29 84.67 0.96 4.67 16 6 N -0.52 -17.74 10.09 -189.54 -1.91 -19.65 16 7 C 0.39 13.76 7.59 137.38 1.04 14.80 16 8 C 0.42 16.89 7.51 136.20 1.02 17.91 16 9 N -0.86 -29.01 8.12 -50.76 -0.41 -29.42 16 10 N -0.50 -24.14 9.65 -175.86 -1.70 -25.84 16 11 C 0.01 0.32 5.65 41.23 0.23 0.55 16 12 C -0.14 -5.81 7.71 22.52 0.17 -5.64 16 13 C -0.18 -7.50 9.97 22.29 0.22 -7.28 16 14 C -0.15 -6.71 9.94 22.24 0.22 -6.49 16 15 C 0.01 0.32 6.67 22.82 0.15 0.47 16 16 F -0.16 -9.04 14.46 44.97 0.65 -8.39 16 17 C 0.07 3.73 5.53 -19.79 -0.11 3.63 16 18 C -0.47 -27.40 8.54 23.27 0.20 -27.20 16 19 H 0.07 4.41 7.91 -2.91 -0.02 4.39 16 20 C 0.04 1.96 4.56 85.30 0.39 2.35 16 21 N -0.81 -45.49 11.23 21.86 0.25 -45.25 16 22 Si 0.97 42.28 29.60 68.60 2.03 44.32 16 23 H -0.26 -11.14 7.11 99.48 0.71 -10.44 16 24 H -0.26 -11.02 7.11 99.48 0.71 -10.32 16 25 H -0.26 -10.74 7.11 99.48 0.71 -10.04 16 26 N -0.57 -16.16 8.57 -302.28 -2.59 -18.75 16 27 H 0.13 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.06 0.91 8.11 -2.39 -0.02 0.89 16 29 H 0.06 0.91 8.12 -2.39 -0.02 0.89 16 30 H 0.19 1.95 8.06 -2.91 -0.02 1.92 16 31 H 0.22 2.87 8.06 -2.91 -0.02 2.84 16 32 H 0.40 14.77 6.39 -92.71 -0.59 14.18 16 33 H 0.41 11.15 8.22 -92.71 -0.76 10.39 16 34 H 0.12 4.54 7.57 -2.91 -0.02 4.52 16 35 H 0.14 4.49 8.06 -2.91 -0.02 4.46 16 36 H 0.12 4.93 8.06 -2.91 -0.02 4.91 16 37 H 0.29 14.71 8.30 -92.70 -0.77 13.94 16 Total: -1.00 -73.68 331.57 1.74 -71.94 By element: Atomic # 1 Polarization: 33.75 SS G_CDS: -0.20 Total: 33.55 kcal Atomic # 6 Polarization: -2.32 SS G_CDS: 6.55 Total: 4.23 kcal Atomic # 7 Polarization: -132.54 SS G_CDS: -6.37 Total: -138.91 kcal Atomic # 8 Polarization: -5.80 SS G_CDS: -0.93 Total: -6.73 kcal Atomic # 9 Polarization: -9.04 SS G_CDS: 0.65 Total: -8.39 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 2.03 Total: 44.32 kcal Total: -73.68 1.74 -71.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168428216.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.785 kcal (2) G-P(sol) polarization free energy of solvation -73.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.938 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds